Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04116 and MPMX19_04117 overlap by 4 nucleotides MPMX19_04117 and MPMX19_04118 are separated by 95 nucleotides MPMX19_04118 and MPMX19_04119 are separated by 27 nucleotides MPMX19_04119 and MPMX19_04120 overlap by 14 nucleotides MPMX19_04120 and MPMX19_04121 are separated by 19 nucleotides
MPMX19_04116: MPMX19_04116 - Protein-glutamate methylesterase/protein-glutamine glutaminase of group 3 operon, at 425,035 to 426,210
_04116
MPMX19_04117: MPMX19_04117 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 426,207 to 426,974
_04117
MPMX19_04118: MPMX19_04118 - Sensor histidine kinase RcsC, at 427,070 to 428,731
_04118
MPMX19_04119: MPMX19_04119 - hypothetical protein, at 428,759 to 429,166
_04119
MPMX19_04120: MPMX19_04120 - hypothetical protein, at 429,153 to 429,542
_04120
MPMX19_04121: MPMX19_04121 - Putative aminopeptidase YsdC, at 429,562 to 430,620
_04121
Position (kb) 427
428
429 Strain fitness (log2 ratio) -2
-1
0
1
2 at 426.084 kb on + strand, within MPMX19_04116 at 426.084 kb on + strand, within MPMX19_04116 at 426.084 kb on + strand, within MPMX19_04116 at 426.922 kb on - strand at 426.972 kb on + strand at 426.972 kb on + strand at 426.972 kb on + strand at 426.972 kb on + strand at 426.973 kb on - strand at 426.973 kb on - strand at 426.973 kb on - strand at 426.973 kb on - strand at 426.984 kb on - strand at 427.023 kb on - strand at 427.400 kb on + strand, within MPMX19_04118 at 427.400 kb on + strand, within MPMX19_04118 at 427.994 kb on + strand, within MPMX19_04118 at 427.995 kb on - strand, within MPMX19_04118 at 427.995 kb on - strand, within MPMX19_04118 at 427.995 kb on - strand, within MPMX19_04118 at 428.865 kb on + strand, within MPMX19_04119 at 428.866 kb on - strand, within MPMX19_04119 at 428.866 kb on - strand, within MPMX19_04119 at 428.925 kb on + strand, within MPMX19_04119 at 428.926 kb on - strand, within MPMX19_04119 at 428.926 kb on - strand, within MPMX19_04119 at 429.039 kb on + strand, within MPMX19_04119 at 429.039 kb on + strand, within MPMX19_04119 at 429.039 kb on + strand, within MPMX19_04119 at 429.040 kb on - strand, within MPMX19_04119 at 429.040 kb on - strand, within MPMX19_04119 at 429.040 kb on - strand, within MPMX19_04119 at 429.166 kb on + strand at 429.274 kb on + strand, within MPMX19_04120 at 429.274 kb on + strand, within MPMX19_04120 at 429.292 kb on + strand, within MPMX19_04120 at 429.292 kb on + strand, within MPMX19_04120 at 429.326 kb on + strand, within MPMX19_04120 at 429.326 kb on + strand, within MPMX19_04120 at 429.355 kb on + strand, within MPMX19_04120 at 429.355 kb on + strand, within MPMX19_04120 at 429.355 kb on + strand, within MPMX19_04120 at 429.355 kb on + strand, within MPMX19_04120 at 429.355 kb on + strand, within MPMX19_04120 at 429.500 kb on + strand, within MPMX19_04120 at 429.500 kb on + strand, within MPMX19_04120 at 429.528 kb on + strand at 429.528 kb on + strand at 429.528 kb on + strand at 429.529 kb on - strand at 429.529 kb on - strand at 429.587 kb on + strand at 429.587 kb on + strand at 429.587 kb on + strand at 429.588 kb on - strand at 429.588 kb on - strand at 429.588 kb on - strand at 429.588 kb on - strand at 429.588 kb on - strand at 429.588 kb on - strand at 429.599 kb on - strand at 429.641 kb on + strand at 429.641 kb on + strand at 429.728 kb on + strand, within MPMX19_04121 at 429.728 kb on + strand, within MPMX19_04121 at 429.729 kb on - strand, within MPMX19_04121 at 429.729 kb on - strand, within MPMX19_04121 at 429.731 kb on + strand, within MPMX19_04121 at 429.731 kb on + strand, within MPMX19_04121 at 429.731 kb on + strand, within MPMX19_04121
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 426,084 + MPMX19_04116 0.89 +0.2 426,084 + MPMX19_04116 0.89 -0.1 426,084 + MPMX19_04116 0.89 +0.5 426,922 - -1.6 426,972 + -0.5 426,972 + -1.3 426,972 + +0.3 426,972 + +0.0 426,973 - -2.7 426,973 - +0.7 426,973 - +2.2 426,973 - -0.3 426,984 - +0.5 427,023 - -0.1 427,400 + MPMX19_04118 0.20 -1.0 427,400 + MPMX19_04118 0.20 -1.5 427,994 + MPMX19_04118 0.56 -0.9 427,995 - MPMX19_04118 0.56 +0.5 427,995 - MPMX19_04118 0.56 -0.7 427,995 - MPMX19_04118 0.56 -1.4 428,865 + MPMX19_04119 0.26 -0.0 428,866 - MPMX19_04119 0.26 -1.9 428,866 - MPMX19_04119 0.26 -0.5 428,925 + MPMX19_04119 0.41 +1.0 428,926 - MPMX19_04119 0.41 -0.1 428,926 - MPMX19_04119 0.41 -1.3 429,039 + MPMX19_04119 0.69 -2.1 429,039 + MPMX19_04119 0.69 +0.6 429,039 + MPMX19_04119 0.69 +0.9 429,040 - MPMX19_04119 0.69 -0.8 429,040 - MPMX19_04119 0.69 +1.3 429,040 - MPMX19_04119 0.69 -1.5 429,166 + +1.7 429,274 + MPMX19_04120 0.31 -2.4 429,274 + MPMX19_04120 0.31 +1.0 429,292 + MPMX19_04120 0.36 +1.4 429,292 + MPMX19_04120 0.36 -1.6 429,326 + MPMX19_04120 0.44 +1.7 429,326 + MPMX19_04120 0.44 -0.9 429,355 + MPMX19_04120 0.52 -0.9 429,355 + MPMX19_04120 0.52 +0.5 429,355 + MPMX19_04120 0.52 -1.3 429,355 + MPMX19_04120 0.52 -0.1 429,355 + MPMX19_04120 0.52 +0.8 429,500 + MPMX19_04120 0.89 -0.3 429,500 + MPMX19_04120 0.89 +0.2 429,528 + +0.1 429,528 + +2.3 429,528 + -0.1 429,529 - -0.3 429,529 - +0.1 429,587 + +0.7 429,587 + +0.1 429,587 + -0.8 429,588 - -0.4 429,588 - +0.4 429,588 - +0.9 429,588 - +0.1 429,588 - -2.5 429,588 - -0.2 429,599 - -1.2 429,641 + -1.1 429,641 + +0.5 429,728 + MPMX19_04121 0.16 +1.4 429,728 + MPMX19_04121 0.16 -0.7 429,729 - MPMX19_04121 0.16 -1.1 429,729 - MPMX19_04121 0.16 -1.2 429,731 + MPMX19_04121 0.16 -0.3 429,731 + MPMX19_04121 0.16 -1.8 429,731 + MPMX19_04121 0.16 +1.0
Or see this region's nucleotide sequence