Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04029 and MPMX19_04030 are separated by 103 nucleotides MPMX19_04030 and MPMX19_04031 are separated by 1 nucleotides
MPMX19_04029: MPMX19_04029 - Glycine cleavage system transcriptional activator, at 324,889 to 325,812
_04029
MPMX19_04030: MPMX19_04030 - hypothetical protein, at 325,916 to 327,349
_04030
MPMX19_04031: MPMX19_04031 - hypothetical protein, at 327,351 to 329,189
_04031
Position (kb) 325
326
327
328 Strain fitness (log2 ratio) -2
-1
0
1
2 at 325.099 kb on + strand, within MPMX19_04029 at 325.099 kb on + strand, within MPMX19_04029 at 325.100 kb on - strand, within MPMX19_04029 at 325.100 kb on - strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.171 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.694 kb on - strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.855 kb on + strand at 325.855 kb on + strand at 325.855 kb on + strand at 325.855 kb on + strand at 325.855 kb on + strand at 325.856 kb on - strand at 325.856 kb on - strand at 325.856 kb on - strand at 325.856 kb on - strand at 325.856 kb on - strand at 325.857 kb on + strand at 325.857 kb on + strand at 325.857 kb on + strand at 325.857 kb on + strand at 325.857 kb on + strand at 325.857 kb on + strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.051 kb on + strand at 326.052 kb on - strand at 326.052 kb on - strand at 326.052 kb on - strand at 326.253 kb on - strand, within MPMX19_04030 at 326.255 kb on + strand, within MPMX19_04030 at 326.255 kb on + strand, within MPMX19_04030 at 326.255 kb on + strand, within MPMX19_04030 at 326.255 kb on + strand, within MPMX19_04030 at 326.256 kb on - strand, within MPMX19_04030 at 326.567 kb on + strand, within MPMX19_04030 at 326.567 kb on + strand, within MPMX19_04030 at 326.567 kb on + strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030 at 326.903 kb on + strand, within MPMX19_04030 at 326.903 kb on + strand, within MPMX19_04030 at 326.903 kb on + strand, within MPMX19_04030 at 326.903 kb on + strand, within MPMX19_04030 at 326.904 kb on - strand, within MPMX19_04030 at 326.904 kb on - strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.972 kb on + strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.973 kb on - strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.974 kb on + strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 326.975 kb on - strand, within MPMX19_04030 at 327.047 kb on + strand, within MPMX19_04030 at 327.048 kb on - strand, within MPMX19_04030 at 327.048 kb on - strand, within MPMX19_04030 at 327.056 kb on + strand, within MPMX19_04030 at 327.057 kb on - strand, within MPMX19_04030 at 327.057 kb on - strand, within MPMX19_04030 at 327.057 kb on - strand, within MPMX19_04030 at 327.057 kb on - strand, within MPMX19_04030 at 327.156 kb on - strand, within MPMX19_04030 at 327.156 kb on - strand, within MPMX19_04030 at 327.156 kb on - strand, within MPMX19_04030 at 327.156 kb on - strand, within MPMX19_04030 at 327.299 kb on + strand at 327.299 kb on + strand at 327.299 kb on + strand at 327.299 kb on + strand at 327.300 kb on - strand at 327.300 kb on - strand at 327.300 kb on - strand at 327.300 kb on - strand at 327.300 kb on - strand at 327.300 kb on - strand at 327.347 kb on + strand at 327.347 kb on + strand at 327.347 kb on + strand at 327.347 kb on + strand at 327.347 kb on + strand at 327.347 kb on + strand at 327.348 kb on - strand at 327.348 kb on - strand at 327.348 kb on - strand at 327.348 kb on - strand at 327.436 kb on + strand at 327.436 kb on + strand at 327.437 kb on - strand at 327.478 kb on + strand at 327.478 kb on + strand at 327.478 kb on + strand at 327.478 kb on + strand at 327.478 kb on + strand at 327.478 kb on + strand at 327.478 kb on + strand at 327.479 kb on - strand at 327.479 kb on - strand at 327.479 kb on - strand at 327.517 kb on + strand at 327.517 kb on + strand at 327.517 kb on + strand at 327.518 kb on - strand at 327.518 kb on - strand at 327.518 kb on - strand at 327.518 kb on - strand at 327.640 kb on + strand, within MPMX19_04031 at 327.640 kb on + strand, within MPMX19_04031 at 327.640 kb on + strand, within MPMX19_04031 at 327.641 kb on - strand, within MPMX19_04031 at 327.641 kb on - strand, within MPMX19_04031 at 327.641 kb on - strand, within MPMX19_04031 at 328.078 kb on + strand, within MPMX19_04031 at 328.078 kb on + strand, within MPMX19_04031 at 328.078 kb on + strand, within MPMX19_04031 at 328.078 kb on + strand, within MPMX19_04031 at 328.079 kb on - strand, within MPMX19_04031 at 328.079 kb on - strand, within MPMX19_04031 at 328.079 kb on - strand, within MPMX19_04031 at 328.175 kb on - strand, within MPMX19_04031 at 328.175 kb on - strand, within MPMX19_04031 at 328.327 kb on + strand, within MPMX19_04031 at 328.327 kb on + strand, within MPMX19_04031
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 325,099 + MPMX19_04029 0.23 +0.7 325,099 + MPMX19_04029 0.23 -1.1 325,100 - MPMX19_04029 0.23 +0.5 325,100 - MPMX19_04029 0.23 +0.1 325,102 + MPMX19_04029 0.23 -1.0 325,102 + MPMX19_04029 0.23 -1.4 325,102 + MPMX19_04029 0.23 +0.6 325,102 + MPMX19_04029 0.23 +0.3 325,102 + MPMX19_04029 0.23 +1.1 325,102 + MPMX19_04029 0.23 +2.5 325,102 + MPMX19_04029 0.23 +0.7 325,102 + MPMX19_04029 0.23 +0.4 325,102 + MPMX19_04029 0.23 -1.4 325,102 + MPMX19_04029 0.23 +1.3 325,102 + MPMX19_04029 0.23 -0.3 325,103 - MPMX19_04029 0.23 -0.3 325,103 - MPMX19_04029 0.23 -2.5 325,103 - MPMX19_04029 0.23 +1.2 325,103 - MPMX19_04029 0.23 +0.3 325,103 - MPMX19_04029 0.23 -1.0 325,103 - MPMX19_04029 0.23 -1.1 325,103 - MPMX19_04029 0.23 +1.7 325,103 - MPMX19_04029 0.23 -0.4 325,171 + MPMX19_04029 0.31 -0.9 325,693 + MPMX19_04029 0.87 +0.1 325,693 + MPMX19_04029 0.87 +1.3 325,693 + MPMX19_04029 0.87 +1.7 325,693 + MPMX19_04029 0.87 -1.2 325,693 + MPMX19_04029 0.87 +1.0 325,693 + MPMX19_04029 0.87 +0.3 325,693 + MPMX19_04029 0.87 -0.3 325,694 - MPMX19_04029 0.87 -1.6 325,696 + MPMX19_04029 0.87 +0.1 325,696 + MPMX19_04029 0.87 +0.1 325,696 + MPMX19_04029 0.87 -0.5 325,696 + MPMX19_04029 0.87 -2.4 325,696 + MPMX19_04029 0.87 +1.7 325,696 + MPMX19_04029 0.87 -0.9 325,696 + MPMX19_04029 0.87 +0.4 325,696 + MPMX19_04029 0.87 +0.1 325,696 + MPMX19_04029 0.87 +0.7 325,697 - MPMX19_04029 0.87 -2.1 325,697 - MPMX19_04029 0.87 -0.9 325,697 - MPMX19_04029 0.87 -0.3 325,697 - MPMX19_04029 0.87 -0.1 325,697 - MPMX19_04029 0.87 -1.7 325,697 - MPMX19_04029 0.87 +0.6 325,697 - MPMX19_04029 0.87 -1.7 325,697 - MPMX19_04029 0.87 -0.9 325,855 + -2.3 325,855 + -1.7 325,855 + -1.3 325,855 + -0.3 325,855 + +0.3 325,856 - -1.9 325,856 - +0.1 325,856 - -1.7 325,856 - -1.4 325,856 - +1.3 325,857 + -2.0 325,857 + +0.3 325,857 + -0.3 325,857 + -1.2 325,857 + -0.7 325,857 + +0.1 325,858 - -0.4 325,858 - +1.1 325,858 - -1.3 325,858 - -0.2 325,858 - -2.0 325,858 - +0.3 325,858 - -0.6 325,858 - -1.0 325,858 - -0.6 325,858 - -1.2 325,858 - -1.9 326,030 + +0.1 326,030 + -0.7 326,030 + +0.5 326,030 + -0.7 326,030 + -1.6 326,030 + -0.5 326,030 + -1.5 326,030 + -1.4 326,030 + -0.5 326,030 + -1.1 326,030 + -1.3 326,030 + -0.3 326,031 - +0.9 326,031 - -2.0 326,031 - +1.9 326,031 - -1.4 326,031 - -0.6 326,031 - -0.9 326,031 - -1.3 326,031 - -0.2 326,031 - +1.5 326,031 - -1.1 326,031 - -1.9 326,031 - -0.6 326,031 - +0.0 326,051 + -2.2 326,052 - -0.8 326,052 - -0.5 326,052 - +0.3 326,253 - MPMX19_04030 0.24 -0.9 326,255 + MPMX19_04030 0.24 -2.4 326,255 + MPMX19_04030 0.24 -0.1 326,255 + MPMX19_04030 0.24 -0.3 326,255 + MPMX19_04030 0.24 +1.3 326,256 - MPMX19_04030 0.24 -0.5 326,567 + MPMX19_04030 0.45 -2.0 326,567 + MPMX19_04030 0.45 -0.9 326,567 + MPMX19_04030 0.45 -1.1 326,568 - MPMX19_04030 0.45 -1.3 326,568 - MPMX19_04030 0.45 +0.1 326,568 - MPMX19_04030 0.45 -0.3 326,568 - MPMX19_04030 0.45 +0.5 326,568 - MPMX19_04030 0.45 +0.1 326,568 - MPMX19_04030 0.45 -0.8 326,903 + MPMX19_04030 0.69 -1.3 326,903 + MPMX19_04030 0.69 -1.6 326,903 + MPMX19_04030 0.69 +0.6 326,903 + MPMX19_04030 0.69 -0.1 326,904 - MPMX19_04030 0.69 -0.4 326,904 - MPMX19_04030 0.69 +0.3 326,972 + MPMX19_04030 0.74 -0.8 326,972 + MPMX19_04030 0.74 -0.9 326,972 + MPMX19_04030 0.74 +0.1 326,972 + MPMX19_04030 0.74 -1.0 326,972 + MPMX19_04030 0.74 +0.1 326,972 + MPMX19_04030 0.74 +0.7 326,972 + MPMX19_04030 0.74 +0.4 326,972 + MPMX19_04030 0.74 -0.5 326,972 + MPMX19_04030 0.74 -0.7 326,972 + MPMX19_04030 0.74 -0.6 326,972 + MPMX19_04030 0.74 -0.6 326,972 + MPMX19_04030 0.74 -0.0 326,972 + MPMX19_04030 0.74 -0.7 326,972 + MPMX19_04030 0.74 -1.1 326,972 + MPMX19_04030 0.74 -1.3 326,972 + MPMX19_04030 0.74 +0.6 326,973 - MPMX19_04030 0.74 -1.1 326,973 - MPMX19_04030 0.74 -0.1 326,973 - MPMX19_04030 0.74 -0.9 326,973 - MPMX19_04030 0.74 -0.3 326,973 - MPMX19_04030 0.74 -0.2 326,973 - MPMX19_04030 0.74 -0.0 326,973 - MPMX19_04030 0.74 -0.8 326,973 - MPMX19_04030 0.74 +1.3 326,973 - MPMX19_04030 0.74 -1.6 326,973 - MPMX19_04030 0.74 -1.1 326,973 - MPMX19_04030 0.74 -2.5 326,973 - MPMX19_04030 0.74 +0.1 326,973 - MPMX19_04030 0.74 +0.6 326,973 - MPMX19_04030 0.74 -1.9 326,973 - MPMX19_04030 0.74 +1.0 326,973 - MPMX19_04030 0.74 -1.4 326,973 - MPMX19_04030 0.74 -0.7 326,973 - MPMX19_04030 0.74 -0.7 326,973 - MPMX19_04030 0.74 +1.1 326,973 - MPMX19_04030 0.74 +1.2 326,973 - MPMX19_04030 0.74 -1.0 326,973 - MPMX19_04030 0.74 +0.2 326,974 + MPMX19_04030 0.74 -0.2 326,974 + MPMX19_04030 0.74 -2.5 326,974 + MPMX19_04030 0.74 +0.1 326,974 + MPMX19_04030 0.74 +0.4 326,974 + MPMX19_04030 0.74 +1.0 326,974 + MPMX19_04030 0.74 -2.6 326,974 + MPMX19_04030 0.74 -1.3 326,974 + MPMX19_04030 0.74 -1.6 326,974 + MPMX19_04030 0.74 +0.7 326,974 + MPMX19_04030 0.74 -0.3 326,974 + MPMX19_04030 0.74 +0.4 326,974 + MPMX19_04030 0.74 +0.3 326,974 + MPMX19_04030 0.74 -0.4 326,974 + MPMX19_04030 0.74 -0.7 326,974 + MPMX19_04030 0.74 -2.6 326,975 - MPMX19_04030 0.74 -1.5 326,975 - MPMX19_04030 0.74 -0.2 326,975 - MPMX19_04030 0.74 -1.1 326,975 - MPMX19_04030 0.74 +0.8 326,975 - MPMX19_04030 0.74 +0.2 326,975 - MPMX19_04030 0.74 -0.1 326,975 - MPMX19_04030 0.74 -0.1 326,975 - MPMX19_04030 0.74 -1.0 326,975 - MPMX19_04030 0.74 +0.6 326,975 - MPMX19_04030 0.74 -1.7 326,975 - MPMX19_04030 0.74 +0.4 326,975 - MPMX19_04030 0.74 +0.3 326,975 - MPMX19_04030 0.74 -1.3 327,047 + MPMX19_04030 0.79 -0.8 327,048 - MPMX19_04030 0.79 -0.5 327,048 - MPMX19_04030 0.79 -0.1 327,056 + MPMX19_04030 0.79 -0.9 327,057 - MPMX19_04030 0.80 -0.4 327,057 - MPMX19_04030 0.80 -0.3 327,057 - MPMX19_04030 0.80 -0.6 327,057 - MPMX19_04030 0.80 -1.7 327,156 - MPMX19_04030 0.86 -0.6 327,156 - MPMX19_04030 0.86 +0.7 327,156 - MPMX19_04030 0.86 +0.9 327,156 - MPMX19_04030 0.86 -0.5 327,299 + -0.8 327,299 + -1.4 327,299 + -0.1 327,299 + +0.1 327,300 - -0.0 327,300 - -0.9 327,300 - +2.0 327,300 - -1.5 327,300 - -1.0 327,300 - -0.9 327,347 + -1.6 327,347 + +1.2 327,347 + -0.5 327,347 + -0.6 327,347 + -0.6 327,347 + -1.6 327,348 - -1.2 327,348 - -0.6 327,348 - -2.2 327,348 - +0.3 327,436 + -1.5 327,436 + -0.6 327,437 - -0.0 327,478 + -1.6 327,478 + +0.7 327,478 + +1.7 327,478 + -0.9 327,478 + +1.0 327,478 + -2.1 327,478 + +0.7 327,479 - +1.7 327,479 - -1.0 327,479 - +0.7 327,517 + -1.1 327,517 + -2.0 327,517 + -1.9 327,518 - -1.1 327,518 - -0.2 327,518 - +0.0 327,518 - -0.2 327,640 + MPMX19_04031 0.16 -0.3 327,640 + MPMX19_04031 0.16 +1.7 327,640 + MPMX19_04031 0.16 -1.5 327,641 - MPMX19_04031 0.16 -0.5 327,641 - MPMX19_04031 0.16 -0.3 327,641 - MPMX19_04031 0.16 -0.2 328,078 + MPMX19_04031 0.40 -1.1 328,078 + MPMX19_04031 0.40 -0.7 328,078 + MPMX19_04031 0.40 -1.3 328,078 + MPMX19_04031 0.40 +0.9 328,079 - MPMX19_04031 0.40 +0.6 328,079 - MPMX19_04031 0.40 +0.3 328,079 - MPMX19_04031 0.40 +0.1 328,175 - MPMX19_04031 0.45 +0.4 328,175 - MPMX19_04031 0.45 +0.4 328,327 + MPMX19_04031 0.53 +0.3 328,327 + MPMX19_04031 0.53 -1.4
Or see this region's nucleotide sequence