Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03935 and MPMX19_03936 are separated by 43 nucleotides MPMX19_03936 and MPMX19_03937 are separated by 160 nucleotides
MPMX19_03935: MPMX19_03935 - Acyl-CoA dehydrogenase, short-chain specific, at 215,455 to 216,627
_03935
MPMX19_03936: MPMX19_03936 - Acetyl-CoA acetyltransferase, at 216,671 to 217,852
_03936
MPMX19_03937: MPMX19_03937 - Acyl-CoA dehydrogenase, at 218,013 to 219,146
_03937
Position (kb) 216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 215.674 kb on + strand, within MPMX19_03935 at 215.674 kb on + strand, within MPMX19_03935 at 215.675 kb on - strand, within MPMX19_03935 at 215.737 kb on + strand, within MPMX19_03935 at 215.737 kb on + strand, within MPMX19_03935 at 215.737 kb on + strand, within MPMX19_03935 at 215.738 kb on - strand, within MPMX19_03935 at 215.738 kb on - strand, within MPMX19_03935 at 215.738 kb on - strand, within MPMX19_03935 at 215.807 kb on - strand, within MPMX19_03935 at 215.835 kb on + strand, within MPMX19_03935 at 215.835 kb on + strand, within MPMX19_03935 at 215.835 kb on + strand, within MPMX19_03935 at 215.835 kb on + strand, within MPMX19_03935 at 215.835 kb on + strand, within MPMX19_03935 at 215.836 kb on - strand, within MPMX19_03935 at 215.836 kb on - strand, within MPMX19_03935 at 215.920 kb on + strand, within MPMX19_03935 at 215.920 kb on + strand, within MPMX19_03935 at 215.920 kb on + strand, within MPMX19_03935 at 215.920 kb on + strand, within MPMX19_03935 at 215.920 kb on + strand, within MPMX19_03935 at 215.921 kb on - strand, within MPMX19_03935 at 215.921 kb on - strand, within MPMX19_03935 at 215.983 kb on + strand, within MPMX19_03935 at 215.983 kb on + strand, within MPMX19_03935 at 215.983 kb on + strand, within MPMX19_03935 at 215.984 kb on - strand, within MPMX19_03935 at 215.984 kb on - strand, within MPMX19_03935 at 215.984 kb on - strand, within MPMX19_03935 at 215.984 kb on - strand, within MPMX19_03935 at 215.984 kb on - strand, within MPMX19_03935 at 215.984 kb on - strand, within MPMX19_03935 at 215.984 kb on - strand, within MPMX19_03935 at 215.984 kb on - strand, within MPMX19_03935 at 216.199 kb on + strand, within MPMX19_03935 at 216.199 kb on + strand, within MPMX19_03935 at 216.199 kb on + strand, within MPMX19_03935 at 216.200 kb on - strand, within MPMX19_03935 at 216.268 kb on + strand, within MPMX19_03935 at 216.268 kb on + strand, within MPMX19_03935 at 216.268 kb on + strand, within MPMX19_03935 at 216.268 kb on + strand, within MPMX19_03935 at 216.268 kb on + strand, within MPMX19_03935 at 216.268 kb on + strand, within MPMX19_03935 at 216.269 kb on - strand, within MPMX19_03935 at 216.269 kb on - strand, within MPMX19_03935 at 216.269 kb on - strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.343 kb on + strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.344 kb on - strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.370 kb on + strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.371 kb on - strand, within MPMX19_03935 at 216.376 kb on + strand, within MPMX19_03935 at 216.376 kb on + strand, within MPMX19_03935 at 216.376 kb on + strand, within MPMX19_03935 at 216.376 kb on + strand, within MPMX19_03935 at 216.376 kb on + strand, within MPMX19_03935 at 216.376 kb on + strand, within MPMX19_03935 at 216.376 kb on + strand, within MPMX19_03935 at 216.376 kb on + strand, within MPMX19_03935 at 216.377 kb on - strand, within MPMX19_03935 at 216.377 kb on - strand, within MPMX19_03935 at 216.377 kb on - strand, within MPMX19_03935 at 216.377 kb on - strand, within MPMX19_03935 at 216.377 kb on - strand, within MPMX19_03935 at 216.377 kb on - strand, within MPMX19_03935 at 216.377 kb on - strand, within MPMX19_03935 at 216.377 kb on - strand, within MPMX19_03935 at 216.553 kb on + strand at 216.553 kb on + strand at 216.554 kb on - strand at 216.554 kb on - strand at 216.554 kb on - strand at 217.040 kb on + strand, within MPMX19_03936 at 217.040 kb on + strand, within MPMX19_03936 at 217.040 kb on + strand, within MPMX19_03936 at 217.041 kb on - strand, within MPMX19_03936 at 217.041 kb on - strand, within MPMX19_03936 at 217.041 kb on - strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.127 kb on + strand, within MPMX19_03936 at 217.128 kb on - strand, within MPMX19_03936 at 217.128 kb on - strand, within MPMX19_03936 at 217.128 kb on - strand, within MPMX19_03936 at 217.128 kb on - strand, within MPMX19_03936 at 217.178 kb on + strand, within MPMX19_03936 at 217.178 kb on + strand, within MPMX19_03936 at 217.179 kb on - strand, within MPMX19_03936 at 217.179 kb on - strand, within MPMX19_03936 at 217.179 kb on - strand, within MPMX19_03936 at 217.775 kb on + strand at 217.775 kb on + strand at 217.775 kb on + strand at 217.775 kb on + strand at 217.776 kb on - strand at 217.776 kb on - strand at 217.776 kb on - strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.850 kb on + strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.851 kb on - strand at 217.867 kb on + strand at 217.867 kb on + strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.868 kb on - strand at 217.924 kb on - strand at 217.959 kb on + strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.960 kb on - strand at 217.988 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 217.990 kb on + strand at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.212 kb on - strand, within MPMX19_03937 at 218.212 kb on - strand, within MPMX19_03937 at 218.583 kb on + strand, within MPMX19_03937 at 218.701 kb on - strand, within MPMX19_03937 at 218.701 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 215,674 + MPMX19_03935 0.19 +1.0 215,674 + MPMX19_03935 0.19 -0.4 215,675 - MPMX19_03935 0.19 -1.2 215,737 + MPMX19_03935 0.24 +0.5 215,737 + MPMX19_03935 0.24 +0.6 215,737 + MPMX19_03935 0.24 +0.9 215,738 - MPMX19_03935 0.24 +1.7 215,738 - MPMX19_03935 0.24 +0.1 215,738 - MPMX19_03935 0.24 +0.0 215,807 - MPMX19_03935 0.30 -0.3 215,835 + MPMX19_03935 0.32 -1.7 215,835 + MPMX19_03935 0.32 -1.9 215,835 + MPMX19_03935 0.32 +0.7 215,835 + MPMX19_03935 0.32 -0.9 215,835 + MPMX19_03935 0.32 -0.4 215,836 - MPMX19_03935 0.32 +0.0 215,836 - MPMX19_03935 0.32 +1.1 215,920 + MPMX19_03935 0.40 -0.1 215,920 + MPMX19_03935 0.40 +0.7 215,920 + MPMX19_03935 0.40 -2.2 215,920 + MPMX19_03935 0.40 -0.6 215,920 + MPMX19_03935 0.40 +0.9 215,921 - MPMX19_03935 0.40 -1.4 215,921 - MPMX19_03935 0.40 +1.0 215,983 + MPMX19_03935 0.45 -1.4 215,983 + MPMX19_03935 0.45 -1.9 215,983 + MPMX19_03935 0.45 -1.0 215,984 - MPMX19_03935 0.45 +0.8 215,984 - MPMX19_03935 0.45 +0.9 215,984 - MPMX19_03935 0.45 -0.3 215,984 - MPMX19_03935 0.45 +0.5 215,984 - MPMX19_03935 0.45 -0.6 215,984 - MPMX19_03935 0.45 +0.9 215,984 - MPMX19_03935 0.45 +0.3 215,984 - MPMX19_03935 0.45 +0.3 216,199 + MPMX19_03935 0.63 -1.3 216,199 + MPMX19_03935 0.63 +2.5 216,199 + MPMX19_03935 0.63 -2.4 216,200 - MPMX19_03935 0.64 +1.7 216,268 + MPMX19_03935 0.69 -0.2 216,268 + MPMX19_03935 0.69 +0.0 216,268 + MPMX19_03935 0.69 +0.8 216,268 + MPMX19_03935 0.69 -2.0 216,268 + MPMX19_03935 0.69 -1.3 216,268 + MPMX19_03935 0.69 -1.3 216,269 - MPMX19_03935 0.69 -0.9 216,269 - MPMX19_03935 0.69 +0.7 216,269 - MPMX19_03935 0.69 -0.6 216,343 + MPMX19_03935 0.76 -0.2 216,343 + MPMX19_03935 0.76 -0.2 216,343 + MPMX19_03935 0.76 -0.4 216,343 + MPMX19_03935 0.76 +0.4 216,343 + MPMX19_03935 0.76 +0.1 216,343 + MPMX19_03935 0.76 -0.4 216,343 + MPMX19_03935 0.76 -0.9 216,343 + MPMX19_03935 0.76 +0.6 216,343 + MPMX19_03935 0.76 +0.5 216,343 + MPMX19_03935 0.76 -0.9 216,343 + MPMX19_03935 0.76 -2.2 216,343 + MPMX19_03935 0.76 -0.2 216,343 + MPMX19_03935 0.76 -0.1 216,343 + MPMX19_03935 0.76 -1.3 216,343 + MPMX19_03935 0.76 +0.6 216,343 + MPMX19_03935 0.76 -0.0 216,343 + MPMX19_03935 0.76 -0.3 216,343 + MPMX19_03935 0.76 +1.1 216,343 + MPMX19_03935 0.76 -0.5 216,343 + MPMX19_03935 0.76 -0.0 216,343 + MPMX19_03935 0.76 +0.4 216,343 + MPMX19_03935 0.76 -1.1 216,343 + MPMX19_03935 0.76 -1.3 216,343 + MPMX19_03935 0.76 -0.4 216,343 + MPMX19_03935 0.76 +0.8 216,343 + MPMX19_03935 0.76 -0.7 216,343 + MPMX19_03935 0.76 -0.9 216,343 + MPMX19_03935 0.76 -0.0 216,344 - MPMX19_03935 0.76 -2.2 216,344 - MPMX19_03935 0.76 +0.3 216,344 - MPMX19_03935 0.76 +0.7 216,344 - MPMX19_03935 0.76 -1.2 216,344 - MPMX19_03935 0.76 +1.0 216,344 - MPMX19_03935 0.76 -1.4 216,344 - MPMX19_03935 0.76 -0.2 216,344 - MPMX19_03935 0.76 -1.3 216,344 - MPMX19_03935 0.76 -0.8 216,344 - MPMX19_03935 0.76 -0.9 216,344 - MPMX19_03935 0.76 -0.3 216,344 - MPMX19_03935 0.76 -1.3 216,344 - MPMX19_03935 0.76 +0.4 216,344 - MPMX19_03935 0.76 -0.1 216,344 - MPMX19_03935 0.76 -1.1 216,344 - MPMX19_03935 0.76 -1.5 216,344 - MPMX19_03935 0.76 -1.4 216,370 + MPMX19_03935 0.78 -3.0 216,370 + MPMX19_03935 0.78 -0.3 216,370 + MPMX19_03935 0.78 -0.6 216,370 + MPMX19_03935 0.78 -1.1 216,370 + MPMX19_03935 0.78 -0.1 216,370 + MPMX19_03935 0.78 -0.1 216,370 + MPMX19_03935 0.78 +0.1 216,370 + MPMX19_03935 0.78 +0.8 216,370 + MPMX19_03935 0.78 +0.1 216,370 + MPMX19_03935 0.78 -0.9 216,371 - MPMX19_03935 0.78 -1.3 216,371 - MPMX19_03935 0.78 +0.7 216,371 - MPMX19_03935 0.78 -1.9 216,371 - MPMX19_03935 0.78 -0.4 216,371 - MPMX19_03935 0.78 -1.2 216,371 - MPMX19_03935 0.78 +0.3 216,371 - MPMX19_03935 0.78 +0.3 216,371 - MPMX19_03935 0.78 +0.4 216,371 - MPMX19_03935 0.78 +0.6 216,371 - MPMX19_03935 0.78 -1.1 216,371 - MPMX19_03935 0.78 -1.3 216,371 - MPMX19_03935 0.78 -0.9 216,376 + MPMX19_03935 0.79 +0.7 216,376 + MPMX19_03935 0.79 +0.4 216,376 + MPMX19_03935 0.79 -0.2 216,376 + MPMX19_03935 0.79 +1.0 216,376 + MPMX19_03935 0.79 -1.3 216,376 + MPMX19_03935 0.79 -0.2 216,376 + MPMX19_03935 0.79 -2.0 216,376 + MPMX19_03935 0.79 -0.5 216,377 - MPMX19_03935 0.79 +1.2 216,377 - MPMX19_03935 0.79 -0.9 216,377 - MPMX19_03935 0.79 +0.1 216,377 - MPMX19_03935 0.79 +1.7 216,377 - MPMX19_03935 0.79 -1.2 216,377 - MPMX19_03935 0.79 +1.7 216,377 - MPMX19_03935 0.79 -0.3 216,377 - MPMX19_03935 0.79 +0.7 216,553 + +0.3 216,553 + +0.3 216,554 - +0.3 216,554 - -0.1 216,554 - +1.1 217,040 + MPMX19_03936 0.31 -1.3 217,040 + MPMX19_03936 0.31 -0.7 217,040 + MPMX19_03936 0.31 -0.9 217,041 - MPMX19_03936 0.31 -0.6 217,041 - MPMX19_03936 0.31 -1.1 217,041 - MPMX19_03936 0.31 -1.9 217,127 + MPMX19_03936 0.39 -1.6 217,127 + MPMX19_03936 0.39 +0.0 217,127 + MPMX19_03936 0.39 +0.0 217,127 + MPMX19_03936 0.39 -1.6 217,127 + MPMX19_03936 0.39 -0.9 217,127 + MPMX19_03936 0.39 -0.6 217,127 + MPMX19_03936 0.39 -1.4 217,128 - MPMX19_03936 0.39 -0.2 217,128 - MPMX19_03936 0.39 -0.9 217,128 - MPMX19_03936 0.39 +0.3 217,128 - MPMX19_03936 0.39 -0.1 217,178 + MPMX19_03936 0.43 -0.1 217,178 + MPMX19_03936 0.43 -0.1 217,179 - MPMX19_03936 0.43 -0.4 217,179 - MPMX19_03936 0.43 -0.9 217,179 - MPMX19_03936 0.43 -1.0 217,775 + -0.1 217,775 + -0.1 217,775 + -0.8 217,775 + +0.6 217,776 - +0.1 217,776 - +1.0 217,776 - -2.0 217,850 + -0.6 217,850 + -0.4 217,850 + -0.2 217,850 + +0.4 217,850 + +0.4 217,850 + -0.3 217,850 + +0.4 217,850 + +0.3 217,851 - -1.0 217,851 - -0.4 217,851 - -0.2 217,851 - +0.7 217,851 - +0.8 217,851 - -0.4 217,851 - -1.7 217,851 - -1.2 217,867 + +1.0 217,867 + +0.1 217,868 - +1.5 217,868 - +1.2 217,868 - -1.9 217,868 - +0.1 217,868 - -0.3 217,868 - +0.3 217,868 - -1.9 217,924 - +0.0 217,959 + -1.1 217,960 - +0.9 217,960 - -1.5 217,960 - +0.5 217,960 - +0.7 217,960 - -0.5 217,960 - -0.2 217,988 + +0.2 217,990 + +0.2 217,990 + -0.9 217,990 + +0.0 217,990 + -0.5 217,990 + -1.8 217,990 + +0.9 217,990 + -1.1 217,990 + +0.1 217,990 + -2.3 217,990 + +0.7 217,990 + -0.9 218,211 + MPMX19_03937 0.17 +0.1 218,211 + MPMX19_03937 0.17 -0.3 218,211 + MPMX19_03937 0.17 +0.1 218,211 + MPMX19_03937 0.17 -0.7 218,212 - MPMX19_03937 0.18 -0.5 218,212 - MPMX19_03937 0.18 +1.1 218,583 + MPMX19_03937 0.50 -1.5 218,701 - MPMX19_03937 0.61 -0.6 218,701 - MPMX19_03937 0.61 +0.4 218,797 - MPMX19_03937 0.69 +0.1 218,797 - MPMX19_03937 0.69 +0.4 218,797 - MPMX19_03937 0.69 -0.1 218,797 - MPMX19_03937 0.69 -0.9
Or see this region's nucleotide sequence