Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03870

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03869 and MPMX19_03870 are separated by 79 nucleotidesMPMX19_03870 and MPMX19_03871 are separated by 44 nucleotidesMPMX19_03871 and MPMX19_03872 are separated by 20 nucleotides MPMX19_03869: MPMX19_03869 - hypothetical protein, at 116,600 to 117,493 _03869 MPMX19_03870: MPMX19_03870 - L-aspartate dehydrogenase, at 117,573 to 118,430 _03870 MPMX19_03871: MPMX19_03871 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 118,475 to 119,275 _03871 MPMX19_03872: MPMX19_03872 - hypothetical protein, at 119,296 to 119,994 _03872 Position (kb) 117 118 119Strain fitness (log2 ratio) -3 -2 -1 0 1at 116.573 kb on + strandat 116.573 kb on + strandat 116.573 kb on + strandat 116.573 kb on + strandat 116.573 kb on + strandat 116.573 kb on + strandat 116.573 kb on + strandat 116.573 kb on + strandat 116.573 kb on + strandat 116.573 kb on + strandat 116.573 kb on + strandat 116.573 kb on + strandat 116.573 kb on + strandat 116.573 kb on + strandat 116.573 kb on + strandat 116.573 kb on + strandat 116.573 kb on + strandat 116.574 kb on - strandat 116.574 kb on - strandat 116.574 kb on - strandat 116.574 kb on - strandat 116.574 kb on - strandat 116.627 kb on + strandat 116.627 kb on + strandat 116.628 kb on - strandat 116.687 kb on + strandat 116.687 kb on + strandat 116.687 kb on + strandat 116.687 kb on + strandat 116.687 kb on + strandat 116.687 kb on + strandat 116.687 kb on + strandat 116.687 kb on + strandat 116.688 kb on - strandat 116.688 kb on - strandat 116.688 kb on - strandat 116.688 kb on - strandat 116.688 kb on - strandat 116.688 kb on - strandat 116.688 kb on - strandat 116.688 kb on - strandat 116.688 kb on - strandat 116.688 kb on - strandat 116.771 kb on + strand, within MPMX19_03869at 116.771 kb on + strand, within MPMX19_03869at 116.771 kb on + strand, within MPMX19_03869at 116.772 kb on - strand, within MPMX19_03869at 116.772 kb on - strand, within MPMX19_03869at 116.772 kb on - strand, within MPMX19_03869at 116.772 kb on - strand, within MPMX19_03869at 116.792 kb on + strand, within MPMX19_03869at 116.792 kb on + strand, within MPMX19_03869at 116.792 kb on + strand, within MPMX19_03869at 116.792 kb on + strand, within MPMX19_03869at 116.793 kb on - strand, within MPMX19_03869at 116.793 kb on - strand, within MPMX19_03869at 116.793 kb on - strand, within MPMX19_03869at 116.879 kb on + strand, within MPMX19_03869at 116.879 kb on + strand, within MPMX19_03869at 116.880 kb on - strand, within MPMX19_03869at 116.880 kb on - strand, within MPMX19_03869at 116.880 kb on - strand, within MPMX19_03869at 116.880 kb on - strand, within MPMX19_03869at 117.119 kb on + strand, within MPMX19_03869at 117.119 kb on + strand, within MPMX19_03869at 117.120 kb on - strand, within MPMX19_03869at 117.120 kb on - strand, within MPMX19_03869at 117.120 kb on - strand, within MPMX19_03869at 117.120 kb on - strand, within MPMX19_03869at 117.120 kb on - strand, within MPMX19_03869at 117.321 kb on - strand, within MPMX19_03869at 117.321 kb on - strand, within MPMX19_03869at 118.089 kb on + strand, within MPMX19_03870at 118.089 kb on + strand, within MPMX19_03870at 118.090 kb on - strand, within MPMX19_03870at 118.090 kb on - strand, within MPMX19_03870at 118.090 kb on - strand, within MPMX19_03870at 118.389 kb on + strandat 118.389 kb on + strandat 118.389 kb on + strandat 118.389 kb on + strandat 118.390 kb on - strandat 118.390 kb on - strandat 118.756 kb on + strand, within MPMX19_03871at 118.757 kb on - strand, within MPMX19_03871at 119.180 kb on + strand, within MPMX19_03871at 119.180 kb on + strand, within MPMX19_03871at 119.181 kb on - strand, within MPMX19_03871at 119.222 kb on + strandat 119.222 kb on + strandat 119.222 kb on + strandat 119.222 kb on + strandat 119.222 kb on + strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.258 kb on + strandat 119.258 kb on + strandat 119.258 kb on + strandat 119.258 kb on + strandat 119.258 kb on + strandat 119.258 kb on + strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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116,573 + -1.3
116,573 + -0.9
116,573 + -0.4
116,573 + -1.2
116,573 + -1.1
116,573 + +1.4
116,573 + -1.3
116,573 + +0.7
116,573 + -0.1
116,573 + +0.3
116,573 + -0.1
116,573 + -0.5
116,573 + -3.2
116,573 + +0.5
116,573 + -0.0
116,573 + -0.8
116,573 + -1.3
116,574 - -0.4
116,574 - +0.7
116,574 - -0.6
116,574 - -1.7
116,574 - -0.1
116,627 + -1.6
116,627 + -1.8
116,628 - -2.5
116,687 + -0.9
116,687 + -0.6
116,687 + -2.1
116,687 + -1.4
116,687 + -0.1
116,687 + +0.4
116,687 + -1.8
116,687 + +0.7
116,688 - -0.1
116,688 - +0.0
116,688 - +0.4
116,688 - -0.2
116,688 - -1.0
116,688 - +0.7
116,688 - -0.1
116,688 - -0.6
116,688 - -0.8
116,688 - +0.4
116,771 + MPMX19_03869 0.19 -0.7
116,771 + MPMX19_03869 0.19 -0.3
116,771 + MPMX19_03869 0.19 +0.6
116,772 - MPMX19_03869 0.19 -1.3
116,772 - MPMX19_03869 0.19 -0.2
116,772 - MPMX19_03869 0.19 +1.3
116,772 - MPMX19_03869 0.19 -0.5
116,792 + MPMX19_03869 0.21 -0.3
116,792 + MPMX19_03869 0.21 -0.6
116,792 + MPMX19_03869 0.21 +0.2
116,792 + MPMX19_03869 0.21 -2.1
116,793 - MPMX19_03869 0.22 -0.1
116,793 - MPMX19_03869 0.22 +1.2
116,793 - MPMX19_03869 0.22 +0.9
116,879 + MPMX19_03869 0.31 -0.5
116,879 + MPMX19_03869 0.31 +0.5
116,880 - MPMX19_03869 0.31 -0.3
116,880 - MPMX19_03869 0.31 -0.1
116,880 - MPMX19_03869 0.31 -1.6
116,880 - MPMX19_03869 0.31 -0.0
117,119 + MPMX19_03869 0.58 -1.1
117,119 + MPMX19_03869 0.58 +0.2
117,120 - MPMX19_03869 0.58 +0.6
117,120 - MPMX19_03869 0.58 -1.0
117,120 - MPMX19_03869 0.58 -0.7
117,120 - MPMX19_03869 0.58 -0.5
117,120 - MPMX19_03869 0.58 -0.5
117,321 - MPMX19_03869 0.81 +1.2
117,321 - MPMX19_03869 0.81 -0.5
118,089 + MPMX19_03870 0.60 -0.6
118,089 + MPMX19_03870 0.60 -2.3
118,090 - MPMX19_03870 0.60 -1.3
118,090 - MPMX19_03870 0.60 -0.6
118,090 - MPMX19_03870 0.60 -1.0
118,389 + -2.0
118,389 + +0.5
118,389 + -0.3
118,389 + -0.3
118,390 - -1.3
118,390 - -2.1
118,756 + MPMX19_03871 0.35 -0.3
118,757 - MPMX19_03871 0.35 +0.1
119,180 + MPMX19_03871 0.88 -0.3
119,180 + MPMX19_03871 0.88 -1.8
119,181 - MPMX19_03871 0.88 -0.1
119,222 + -0.8
119,222 + -0.0
119,222 + +0.2
119,222 + -0.8
119,222 + -0.6
119,223 - -1.0
119,223 - -1.6
119,223 - -1.1
119,223 - +0.3
119,223 - -0.8
119,223 - +1.1
119,223 - +0.9
119,223 - -0.7
119,223 - +0.3
119,223 - -0.1
119,223 - +0.5
119,258 + +0.2
119,258 + -1.6
119,258 + +0.9
119,258 + +1.2
119,258 + -2.0
119,258 + +0.3
119,259 - +1.7
119,259 - -0.7
119,259 - -1.4
119,259 - +0.6
119,259 - +0.9
119,259 - -0.6
119,259 - -1.8
119,259 - -0.6
119,259 - +0.2
119,259 - +1.1

Or see this region's nucleotide sequence