Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03814 and MPMX19_03815 are separated by 11 nucleotides MPMX19_03815 and MPMX19_03816 are separated by 89 nucleotides MPMX19_03816 and MPMX19_03817 are separated by 172 nucleotides
MPMX19_03814: MPMX19_03814 - hypothetical protein, at 51,338 to 52,486
_03814
MPMX19_03815: MPMX19_03815 - hypothetical protein, at 52,498 to 52,992
_03815
MPMX19_03816: MPMX19_03816 - hypothetical protein, at 53,082 to 53,720
_03816
MPMX19_03817: MPMX19_03817 - 6-deoxy-6-sulfogluconolactonase, at 53,893 to 54,786
_03817
Position (kb) 53
54 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 52.117 kb on + strand, within MPMX19_03814 at 52.117 kb on + strand, within MPMX19_03814 at 52.117 kb on + strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.184 kb on + strand, within MPMX19_03814 at 52.185 kb on - strand, within MPMX19_03814 at 52.185 kb on - strand, within MPMX19_03814 at 52.232 kb on + strand, within MPMX19_03814 at 52.233 kb on - strand, within MPMX19_03814 at 52.233 kb on - strand, within MPMX19_03814 at 52.233 kb on - strand, within MPMX19_03814 at 52.258 kb on + strand, within MPMX19_03814 at 52.259 kb on - strand, within MPMX19_03814 at 52.259 kb on - strand, within MPMX19_03814 at 52.361 kb on + strand, within MPMX19_03814 at 52.361 kb on + strand, within MPMX19_03814 at 52.361 kb on + strand, within MPMX19_03814 at 52.361 kb on + strand, within MPMX19_03814 at 52.361 kb on + strand, within MPMX19_03814 at 52.362 kb on - strand, within MPMX19_03814 at 52.362 kb on - strand, within MPMX19_03814 at 52.362 kb on - strand, within MPMX19_03814 at 52.363 kb on + strand, within MPMX19_03814 at 52.364 kb on - strand, within MPMX19_03814 at 52.386 kb on - strand at 52.386 kb on - strand at 52.386 kb on - strand at 52.558 kb on + strand, within MPMX19_03815 at 52.558 kb on + strand, within MPMX19_03815 at 52.558 kb on + strand, within MPMX19_03815 at 52.558 kb on + strand, within MPMX19_03815 at 52.558 kb on + strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.673 kb on - strand, within MPMX19_03815 at 52.673 kb on - strand, within MPMX19_03815 at 52.708 kb on - strand, within MPMX19_03815 at 52.708 kb on - strand, within MPMX19_03815 at 52.757 kb on - strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.921 kb on - strand, within MPMX19_03815 at 52.921 kb on - strand, within MPMX19_03815 at 52.997 kb on + strand at 53.009 kb on + strand at 53.009 kb on + strand at 53.009 kb on + strand at 53.009 kb on + strand at 53.009 kb on + strand at 53.009 kb on + strand at 53.010 kb on - strand at 53.010 kb on - strand at 53.010 kb on - strand at 53.058 kb on + strand at 53.058 kb on + strand at 53.058 kb on + strand at 53.058 kb on + strand at 53.058 kb on + strand at 53.058 kb on + strand at 53.058 kb on + strand at 53.632 kb on - strand, within MPMX19_03816 at 53.632 kb on - strand, within MPMX19_03816 at 53.646 kb on + strand, within MPMX19_03816 at 53.646 kb on + strand, within MPMX19_03816 at 53.646 kb on + strand, within MPMX19_03816 at 53.655 kb on + strand, within MPMX19_03816 at 54.373 kb on + strand, within MPMX19_03817 at 54.416 kb on - strand, within MPMX19_03817 at 54.526 kb on + strand, within MPMX19_03817 at 54.527 kb on - strand, within MPMX19_03817 at 54.541 kb on + strand, within MPMX19_03817 at 54.659 kb on - strand, within MPMX19_03817
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 52,117 + MPMX19_03814 0.68 -0.6 52,117 + MPMX19_03814 0.68 -0.8 52,117 + MPMX19_03814 0.68 -2.6 52,118 - MPMX19_03814 0.68 -0.3 52,118 - MPMX19_03814 0.68 -0.8 52,118 - MPMX19_03814 0.68 -1.1 52,118 - MPMX19_03814 0.68 -1.7 52,118 - MPMX19_03814 0.68 -0.4 52,118 - MPMX19_03814 0.68 -0.4 52,118 - MPMX19_03814 0.68 -0.5 52,118 - MPMX19_03814 0.68 +0.9 52,118 - MPMX19_03814 0.68 +0.7 52,184 + MPMX19_03814 0.74 -0.8 52,185 - MPMX19_03814 0.74 -1.2 52,185 - MPMX19_03814 0.74 +4.1 52,232 + MPMX19_03814 0.78 -0.6 52,233 - MPMX19_03814 0.78 +0.9 52,233 - MPMX19_03814 0.78 -0.3 52,233 - MPMX19_03814 0.78 +1.0 52,258 + MPMX19_03814 0.80 -1.7 52,259 - MPMX19_03814 0.80 -0.3 52,259 - MPMX19_03814 0.80 -0.8 52,361 + MPMX19_03814 0.89 +0.6 52,361 + MPMX19_03814 0.89 +0.3 52,361 + MPMX19_03814 0.89 -0.4 52,361 + MPMX19_03814 0.89 +0.2 52,361 + MPMX19_03814 0.89 +0.0 52,362 - MPMX19_03814 0.89 -1.1 52,362 - MPMX19_03814 0.89 +0.9 52,362 - MPMX19_03814 0.89 +2.2 52,363 + MPMX19_03814 0.89 -0.8 52,364 - MPMX19_03814 0.89 +0.7 52,386 - -0.4 52,386 - -0.4 52,386 - +0.1 52,558 + MPMX19_03815 0.12 -1.3 52,558 + MPMX19_03815 0.12 -2.0 52,558 + MPMX19_03815 0.12 +0.5 52,558 + MPMX19_03815 0.12 -0.8 52,558 + MPMX19_03815 0.12 -0.4 52,559 - MPMX19_03815 0.12 -0.3 52,559 - MPMX19_03815 0.12 +0.0 52,559 - MPMX19_03815 0.12 -0.1 52,559 - MPMX19_03815 0.12 +0.4 52,559 - MPMX19_03815 0.12 +2.9 52,559 - MPMX19_03815 0.12 -0.4 52,673 - MPMX19_03815 0.35 +1.6 52,673 - MPMX19_03815 0.35 +0.2 52,708 - MPMX19_03815 0.42 -0.5 52,708 - MPMX19_03815 0.42 +0.6 52,757 - MPMX19_03815 0.52 -0.3 52,920 + MPMX19_03815 0.85 -1.1 52,920 + MPMX19_03815 0.85 +1.4 52,920 + MPMX19_03815 0.85 -1.0 52,920 + MPMX19_03815 0.85 -1.0 52,920 + MPMX19_03815 0.85 -0.5 52,920 + MPMX19_03815 0.85 +0.6 52,921 - MPMX19_03815 0.85 -0.8 52,921 - MPMX19_03815 0.85 -0.8 52,997 + +1.7 53,009 + +0.5 53,009 + -0.7 53,009 + +2.7 53,009 + -0.1 53,009 + -1.3 53,009 + +0.4 53,010 - +1.0 53,010 - -1.3 53,010 - -0.2 53,058 + +0.1 53,058 + -0.4 53,058 + -1.2 53,058 + -0.1 53,058 + -1.1 53,058 + -0.7 53,058 + +0.3 53,632 - MPMX19_03816 0.86 +0.4 53,632 - MPMX19_03816 0.86 -0.8 53,646 + MPMX19_03816 0.88 -0.8 53,646 + MPMX19_03816 0.88 -1.1 53,646 + MPMX19_03816 0.88 -2.6 53,655 + MPMX19_03816 0.90 -0.4 54,373 + MPMX19_03817 0.54 +1.2 54,416 - MPMX19_03817 0.59 -0.3 54,526 + MPMX19_03817 0.71 +0.5 54,527 - MPMX19_03817 0.71 -1.4 54,541 + MPMX19_03817 0.72 +0.2 54,659 - MPMX19_03817 0.86 -0.3
Or see this region's nucleotide sequence