Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03764 and MPMX19_03765 are separated by 114 nucleotides MPMX19_03765 and MPMX19_03766 are separated by 141 nucleotides
MPMX19_03764: MPMX19_03764 - putative deoxycholate-binding periplasmic protein YgiS, at 3,395 to 4,918
_03764
MPMX19_03765: MPMX19_03765 - hypothetical protein, at 5,033 to 5,674
_03765
MPMX19_03766: MPMX19_03766 - Sensor histidine kinase RcsC, at 5,816 to 7,834
_03766
Position (kb) 5
6 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4.406 kb on + strand, within MPMX19_03764 at 4.406 kb on + strand, within MPMX19_03764 at 4.407 kb on - strand, within MPMX19_03764 at 4.407 kb on - strand, within MPMX19_03764 at 4.407 kb on - strand, within MPMX19_03764 at 4.407 kb on - strand, within MPMX19_03764 at 4.499 kb on + strand, within MPMX19_03764 at 4.500 kb on - strand, within MPMX19_03764 at 4.517 kb on + strand, within MPMX19_03764 at 4.517 kb on + strand, within MPMX19_03764 at 4.517 kb on + strand, within MPMX19_03764 at 4.517 kb on + strand, within MPMX19_03764 at 4.518 kb on - strand, within MPMX19_03764 at 4.518 kb on - strand, within MPMX19_03764 at 4.518 kb on - strand, within MPMX19_03764 at 4.518 kb on - strand, within MPMX19_03764 at 4.518 kb on - strand, within MPMX19_03764 at 4.520 kb on + strand, within MPMX19_03764 at 4.520 kb on + strand, within MPMX19_03764 at 4.520 kb on + strand, within MPMX19_03764 at 4.520 kb on + strand, within MPMX19_03764 at 4.520 kb on + strand, within MPMX19_03764 at 4.520 kb on + strand, within MPMX19_03764 at 4.520 kb on + strand, within MPMX19_03764 at 4.521 kb on - strand, within MPMX19_03764 at 4.521 kb on - strand, within MPMX19_03764 at 4.521 kb on - strand, within MPMX19_03764 at 4.521 kb on - strand, within MPMX19_03764 at 4.521 kb on - strand, within MPMX19_03764 at 4.521 kb on - strand, within MPMX19_03764 at 4.521 kb on - strand, within MPMX19_03764 at 4.610 kb on + strand, within MPMX19_03764 at 4.611 kb on - strand, within MPMX19_03764 at 4.644 kb on - strand, within MPMX19_03764 at 4.784 kb on + strand at 4.784 kb on + strand at 4.784 kb on + strand at 4.784 kb on + strand at 4.784 kb on + strand at 4.784 kb on + strand at 4.784 kb on + strand at 4.784 kb on + strand at 4.784 kb on + strand at 4.784 kb on + strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.786 kb on + strand at 4.786 kb on + strand at 4.786 kb on + strand at 4.787 kb on - strand at 4.787 kb on - strand at 4.787 kb on - strand at 4.787 kb on - strand at 4.787 kb on - strand at 4.787 kb on - strand at 4.828 kb on - strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 5.017 kb on + strand at 5.018 kb on - strand at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.398 kb on - strand, within MPMX19_03765 at 5.398 kb on - strand, within MPMX19_03765 at 5.398 kb on - strand, within MPMX19_03765 at 5.406 kb on + strand, within MPMX19_03765 at 5.430 kb on + strand, within MPMX19_03765 at 5.431 kb on - strand, within MPMX19_03765 at 5.431 kb on - strand, within MPMX19_03765 at 5.607 kb on + strand, within MPMX19_03765 at 5.607 kb on + strand, within MPMX19_03765 at 5.607 kb on + strand, within MPMX19_03765 at 5.607 kb on + strand, within MPMX19_03765 at 5.608 kb on - strand, within MPMX19_03765 at 5.608 kb on - strand, within MPMX19_03765 at 5.725 kb on - strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.760 kb on + strand at 5.760 kb on + strand at 5.761 kb on - strand at 5.761 kb on - strand at 5.761 kb on - strand at 5.769 kb on - strand at 5.769 kb on - strand at 5.769 kb on - strand at 5.769 kb on - strand at 5.791 kb on - strand at 5.791 kb on - strand at 5.791 kb on - strand at 5.833 kb on + strand at 5.834 kb on - strand at 6.093 kb on + strand, within MPMX19_03766 at 6.093 kb on + strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 4,406 + MPMX19_03764 0.66 -1.6 4,406 + MPMX19_03764 0.66 +1.2 4,407 - MPMX19_03764 0.66 +0.3 4,407 - MPMX19_03764 0.66 +1.2 4,407 - MPMX19_03764 0.66 +0.1 4,407 - MPMX19_03764 0.66 -1.6 4,499 + MPMX19_03764 0.72 +0.4 4,500 - MPMX19_03764 0.73 +0.3 4,517 + MPMX19_03764 0.74 -1.1 4,517 + MPMX19_03764 0.74 -0.4 4,517 + MPMX19_03764 0.74 +0.5 4,517 + MPMX19_03764 0.74 -1.7 4,518 - MPMX19_03764 0.74 -1.3 4,518 - MPMX19_03764 0.74 -2.1 4,518 - MPMX19_03764 0.74 -0.6 4,518 - MPMX19_03764 0.74 +1.1 4,518 - MPMX19_03764 0.74 +0.6 4,520 + MPMX19_03764 0.74 -0.3 4,520 + MPMX19_03764 0.74 +0.2 4,520 + MPMX19_03764 0.74 +2.3 4,520 + MPMX19_03764 0.74 -1.3 4,520 + MPMX19_03764 0.74 +0.0 4,520 + MPMX19_03764 0.74 -2.2 4,520 + MPMX19_03764 0.74 -0.5 4,521 - MPMX19_03764 0.74 -1.7 4,521 - MPMX19_03764 0.74 -0.3 4,521 - MPMX19_03764 0.74 -0.3 4,521 - MPMX19_03764 0.74 +0.7 4,521 - MPMX19_03764 0.74 -0.6 4,521 - MPMX19_03764 0.74 +3.2 4,521 - MPMX19_03764 0.74 +0.5 4,610 + MPMX19_03764 0.80 -1.0 4,611 - MPMX19_03764 0.80 -0.2 4,644 - MPMX19_03764 0.82 -1.6 4,784 + -0.9 4,784 + +1.6 4,784 + -1.4 4,784 + -0.1 4,784 + +0.6 4,784 + -0.2 4,784 + +0.7 4,784 + +0.3 4,784 + -0.6 4,784 + +0.2 4,785 - -0.6 4,785 - +0.2 4,785 - -0.7 4,785 - -1.4 4,785 - +0.1 4,785 - -0.8 4,785 - -1.7 4,785 - +0.7 4,785 - -2.1 4,785 - -1.3 4,785 - -1.6 4,785 - -2.2 4,785 - -1.3 4,785 - -0.7 4,786 + -0.4 4,786 + -1.4 4,786 + -2.3 4,787 - +0.2 4,787 - -0.3 4,787 - +1.3 4,787 - -1.3 4,787 - -1.7 4,787 - -0.8 4,828 - +0.3 4,847 + +1.1 4,847 + +0.1 4,847 + +0.5 4,847 + -0.4 4,847 + -2.4 4,847 + -2.6 4,847 + -2.5 4,847 + +1.6 4,847 + -0.1 4,847 + +0.5 4,847 + +0.2 4,848 - +0.2 4,848 - -1.7 4,848 - +0.6 4,848 - +0.3 4,848 - -1.5 4,848 - -1.8 4,848 - -0.8 4,848 - -0.7 5,017 + +0.0 5,018 - -0.7 5,397 + MPMX19_03765 0.57 -1.6 5,397 + MPMX19_03765 0.57 -1.3 5,397 + MPMX19_03765 0.57 -0.3 5,397 + MPMX19_03765 0.57 -0.8 5,397 + MPMX19_03765 0.57 -0.4 5,397 + MPMX19_03765 0.57 +0.7 5,398 - MPMX19_03765 0.57 -1.4 5,398 - MPMX19_03765 0.57 +0.9 5,398 - MPMX19_03765 0.57 -0.5 5,406 + MPMX19_03765 0.58 -1.9 5,430 + MPMX19_03765 0.62 -0.1 5,431 - MPMX19_03765 0.62 -1.1 5,431 - MPMX19_03765 0.62 -0.1 5,607 + MPMX19_03765 0.89 -1.3 5,607 + MPMX19_03765 0.89 -1.8 5,607 + MPMX19_03765 0.89 -0.7 5,607 + MPMX19_03765 0.89 -1.5 5,608 - MPMX19_03765 0.90 -0.7 5,608 - MPMX19_03765 0.90 -1.3 5,725 - +0.6 5,755 + -0.7 5,755 + -0.6 5,755 + -1.1 5,755 + -2.0 5,755 + -0.4 5,755 + -1.2 5,755 + -0.3 5,756 - +0.0 5,756 - -0.3 5,756 - -0.3 5,756 - +0.7 5,756 - +0.2 5,756 - +0.1 5,756 - -1.5 5,756 - -1.3 5,756 - -1.0 5,756 - -1.4 5,756 - +0.9 5,760 + +0.6 5,760 + +0.2 5,761 - -0.1 5,761 - -0.8 5,761 - -0.1 5,769 - -1.0 5,769 - +0.2 5,769 - -0.2 5,769 - -1.6 5,791 - -0.5 5,791 - +0.7 5,791 - +0.3 5,833 + -1.8 5,834 - -1.4 6,093 + MPMX19_03766 0.14 -1.0 6,093 + MPMX19_03766 0.14 -0.6 6,094 - MPMX19_03766 0.14 +0.0 6,094 - MPMX19_03766 0.14 -0.8 6,094 - MPMX19_03766 0.14 +0.4 6,094 - MPMX19_03766 0.14 +0.7 6,094 - MPMX19_03766 0.14 -1.3 6,094 - MPMX19_03766 0.14 -2.3
Or see this region's nucleotide sequence