Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03533 and MPMX19_03534 are separated by 32 nucleotides MPMX19_03534 and MPMX19_03535 overlap by 4 nucleotides MPMX19_03535 and MPMX19_03536 overlap by 8 nucleotides MPMX19_03536 and MPMX19_03537 overlap by 1 nucleotides
MPMX19_03533: MPMX19_03533 - hypothetical protein, at 952,366 to 953,562
_03533
MPMX19_03534: MPMX19_03534 - High-affinity branched-chain amino acid transport system permease protein LivH, at 953,595 to 954,527
_03534
MPMX19_03535: MPMX19_03535 - hypothetical protein, at 954,524 to 955,513
_03535
MPMX19_03536: MPMX19_03536 - Lipopolysaccharide export system ATP-binding protein LptB, at 955,506 to 956,261
_03536
MPMX19_03537: MPMX19_03537 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 956,261 to 956,962
_03537
Position (kb) 954
955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 953.536 kb on + strand at 953.537 kb on - strand at 953.721 kb on + strand, within MPMX19_03534 at 953.721 kb on + strand, within MPMX19_03534 at 953.721 kb on + strand, within MPMX19_03534 at 953.721 kb on + strand, within MPMX19_03534 at 953.721 kb on + strand, within MPMX19_03534 at 953.721 kb on + strand, within MPMX19_03534 at 953.721 kb on + strand, within MPMX19_03534 at 953.721 kb on + strand, within MPMX19_03534 at 953.721 kb on + strand, within MPMX19_03534 at 953.721 kb on + strand, within MPMX19_03534 at 953.721 kb on + strand, within MPMX19_03534 at 953.721 kb on + strand, within MPMX19_03534 at 953.721 kb on + strand, within MPMX19_03534 at 953.722 kb on - strand, within MPMX19_03534 at 953.722 kb on - strand, within MPMX19_03534 at 953.722 kb on - strand, within MPMX19_03534 at 953.722 kb on - strand, within MPMX19_03534 at 953.722 kb on - strand, within MPMX19_03534 at 953.722 kb on - strand, within MPMX19_03534 at 953.722 kb on - strand, within MPMX19_03534 at 953.722 kb on - strand, within MPMX19_03534 at 953.722 kb on - strand, within MPMX19_03534 at 953.736 kb on + strand, within MPMX19_03534 at 953.736 kb on + strand, within MPMX19_03534 at 953.736 kb on + strand, within MPMX19_03534 at 953.736 kb on + strand, within MPMX19_03534 at 953.736 kb on + strand, within MPMX19_03534 at 953.737 kb on - strand, within MPMX19_03534 at 953.737 kb on - strand, within MPMX19_03534 at 953.737 kb on - strand, within MPMX19_03534 at 953.737 kb on - strand, within MPMX19_03534 at 953.737 kb on - strand, within MPMX19_03534 at 954.018 kb on + strand, within MPMX19_03534 at 954.018 kb on + strand, within MPMX19_03534 at 954.027 kb on + strand, within MPMX19_03534 at 954.027 kb on + strand, within MPMX19_03534 at 954.459 kb on + strand at 954.459 kb on + strand at 954.459 kb on + strand at 954.459 kb on + strand at 954.459 kb on + strand at 954.459 kb on + strand at 954.459 kb on + strand at 954.459 kb on + strand at 954.460 kb on - strand at 954.460 kb on - strand at 954.460 kb on - strand at 954.460 kb on - strand at 954.460 kb on - strand at 954.460 kb on - strand at 954.460 kb on - strand at 954.460 kb on - strand at 954.460 kb on - strand at 954.746 kb on + strand, within MPMX19_03535 at 954.747 kb on - strand, within MPMX19_03535 at 954.827 kb on + strand, within MPMX19_03535 at 954.827 kb on + strand, within MPMX19_03535 at 954.827 kb on + strand, within MPMX19_03535 at 954.828 kb on - strand, within MPMX19_03535 at 954.957 kb on - strand, within MPMX19_03535 at 954.965 kb on + strand, within MPMX19_03535 at 954.965 kb on + strand, within MPMX19_03535 at 954.965 kb on + strand, within MPMX19_03535 at 954.965 kb on + strand, within MPMX19_03535 at 954.965 kb on + strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 955.151 kb on + strand, within MPMX19_03535 at 955.158 kb on - strand, within MPMX19_03535 at 955.172 kb on + strand, within MPMX19_03535 at 955.172 kb on + strand, within MPMX19_03535 at 955.173 kb on - strand, within MPMX19_03535 at 955.379 kb on + strand, within MPMX19_03535 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.913 kb on - strand, within MPMX19_03536 at 955.913 kb on - strand, within MPMX19_03536 at 955.913 kb on - strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.170 kb on - strand, within MPMX19_03536 at 956.170 kb on - strand, within MPMX19_03536 at 956.170 kb on - strand, within MPMX19_03536 at 956.235 kb on + strand at 956.235 kb on + strand at 956.235 kb on + strand at 956.235 kb on + strand at 956.236 kb on - strand at 956.291 kb on + strand at 956.292 kb on - strand at 956.400 kb on + strand, within MPMX19_03537 at 956.401 kb on - strand, within MPMX19_03537 at 956.401 kb on - strand, within MPMX19_03537 at 956.401 kb on - strand, within MPMX19_03537
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 953,536 + +0.1 953,537 - +0.0 953,721 + MPMX19_03534 0.14 +0.3 953,721 + MPMX19_03534 0.14 -0.1 953,721 + MPMX19_03534 0.14 -1.0 953,721 + MPMX19_03534 0.14 -1.5 953,721 + MPMX19_03534 0.14 -0.3 953,721 + MPMX19_03534 0.14 -1.0 953,721 + MPMX19_03534 0.14 -0.3 953,721 + MPMX19_03534 0.14 -1.8 953,721 + MPMX19_03534 0.14 +0.8 953,721 + MPMX19_03534 0.14 -0.5 953,721 + MPMX19_03534 0.14 +0.4 953,721 + MPMX19_03534 0.14 -0.5 953,721 + MPMX19_03534 0.14 -1.3 953,722 - MPMX19_03534 0.14 -0.9 953,722 - MPMX19_03534 0.14 -1.4 953,722 - MPMX19_03534 0.14 +0.1 953,722 - MPMX19_03534 0.14 +0.1 953,722 - MPMX19_03534 0.14 +0.4 953,722 - MPMX19_03534 0.14 +0.1 953,722 - MPMX19_03534 0.14 +2.2 953,722 - MPMX19_03534 0.14 -0.5 953,722 - MPMX19_03534 0.14 -2.9 953,736 + MPMX19_03534 0.15 +0.7 953,736 + MPMX19_03534 0.15 -0.0 953,736 + MPMX19_03534 0.15 -0.1 953,736 + MPMX19_03534 0.15 -0.5 953,736 + MPMX19_03534 0.15 -0.7 953,737 - MPMX19_03534 0.15 -0.1 953,737 - MPMX19_03534 0.15 -0.7 953,737 - MPMX19_03534 0.15 +0.3 953,737 - MPMX19_03534 0.15 -1.9 953,737 - MPMX19_03534 0.15 -0.2 954,018 + MPMX19_03534 0.45 -0.5 954,018 + MPMX19_03534 0.45 -1.3 954,027 + MPMX19_03534 0.46 +0.0 954,027 + MPMX19_03534 0.46 -0.9 954,459 + -1.3 954,459 + -2.3 954,459 + -0.8 954,459 + -1.3 954,459 + -0.7 954,459 + -0.4 954,459 + +1.2 954,459 + -0.1 954,460 - -1.3 954,460 - -0.8 954,460 - -1.3 954,460 - +0.1 954,460 - -0.8 954,460 - -2.3 954,460 - -1.2 954,460 - -0.8 954,460 - -1.5 954,746 + MPMX19_03535 0.22 +0.2 954,747 - MPMX19_03535 0.23 -2.0 954,827 + MPMX19_03535 0.31 -2.1 954,827 + MPMX19_03535 0.31 +0.1 954,827 + MPMX19_03535 0.31 -0.7 954,828 - MPMX19_03535 0.31 +0.3 954,957 - MPMX19_03535 0.44 +0.1 954,965 + MPMX19_03535 0.45 +0.8 954,965 + MPMX19_03535 0.45 +1.1 954,965 + MPMX19_03535 0.45 -0.9 954,965 + MPMX19_03535 0.45 -0.9 954,965 + MPMX19_03535 0.45 -1.2 954,966 - MPMX19_03535 0.45 -1.9 954,966 - MPMX19_03535 0.45 +0.1 954,966 - MPMX19_03535 0.45 -0.8 954,966 - MPMX19_03535 0.45 +0.6 954,966 - MPMX19_03535 0.45 -1.5 954,966 - MPMX19_03535 0.45 -1.5 954,966 - MPMX19_03535 0.45 -1.8 954,966 - MPMX19_03535 0.45 -0.8 954,966 - MPMX19_03535 0.45 -1.8 955,151 + MPMX19_03535 0.63 -1.8 955,158 - MPMX19_03535 0.64 -0.7 955,172 + MPMX19_03535 0.65 -1.5 955,172 + MPMX19_03535 0.65 +0.4 955,173 - MPMX19_03535 0.66 -1.5 955,379 + MPMX19_03535 0.86 -0.3 955,912 + MPMX19_03536 0.54 -0.7 955,912 + MPMX19_03536 0.54 +0.7 955,912 + MPMX19_03536 0.54 +1.3 955,912 + MPMX19_03536 0.54 -0.3 955,912 + MPMX19_03536 0.54 +0.2 955,913 - MPMX19_03536 0.54 +0.4 955,913 - MPMX19_03536 0.54 -1.3 955,913 - MPMX19_03536 0.54 -1.1 956,169 + MPMX19_03536 0.88 -0.7 956,169 + MPMX19_03536 0.88 -0.3 956,169 + MPMX19_03536 0.88 -0.8 956,169 + MPMX19_03536 0.88 +0.5 956,170 - MPMX19_03536 0.88 +0.7 956,170 - MPMX19_03536 0.88 -1.0 956,170 - MPMX19_03536 0.88 +0.6 956,235 + +1.7 956,235 + -0.8 956,235 + +0.5 956,235 + -0.5 956,236 - +0.2 956,291 + +0.3 956,292 - -1.1 956,400 + MPMX19_03537 0.20 -1.7 956,401 - MPMX19_03537 0.20 -0.3 956,401 - MPMX19_03537 0.20 -0.6 956,401 - MPMX19_03537 0.20 -2.7
Or see this region's nucleotide sequence