Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03437 and MPMX19_03438 are separated by 7 nucleotides MPMX19_03438 and MPMX19_03439 overlap by 4 nucleotides MPMX19_03439 and MPMX19_03440 are separated by 25 nucleotides
MPMX19_03437: MPMX19_03437 - hypothetical protein, at 832,560 to 833,678
_03437
MPMX19_03438: MPMX19_03438 - hypothetical protein, at 833,686 to 834,279
_03438
MPMX19_03439: MPMX19_03439 - hypothetical protein, at 834,276 to 834,860
_03439
MPMX19_03440: MPMX19_03440 - hypothetical protein, at 834,886 to 835,839
_03440
Position (kb) 834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 833.494 kb on - strand, within MPMX19_03437 at 833.521 kb on - strand, within MPMX19_03437 at 833.557 kb on - strand, within MPMX19_03437 at 833.557 kb on - strand, within MPMX19_03437 at 833.557 kb on - strand, within MPMX19_03437 at 833.607 kb on + strand at 833.607 kb on + strand at 833.608 kb on - strand at 833.608 kb on - strand at 833.608 kb on - strand at 833.608 kb on - strand at 833.704 kb on + strand at 833.705 kb on - strand at 833.741 kb on - strand at 833.741 kb on - strand at 833.836 kb on + strand, within MPMX19_03438 at 833.836 kb on + strand, within MPMX19_03438 at 833.836 kb on + strand, within MPMX19_03438 at 833.836 kb on + strand, within MPMX19_03438 at 833.837 kb on - strand, within MPMX19_03438 at 833.837 kb on - strand, within MPMX19_03438 at 833.837 kb on - strand, within MPMX19_03438 at 833.837 kb on - strand, within MPMX19_03438 at 833.846 kb on - strand, within MPMX19_03438 at 833.872 kb on + strand, within MPMX19_03438 at 833.872 kb on + strand, within MPMX19_03438 at 833.872 kb on + strand, within MPMX19_03438 at 833.872 kb on + strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.130 kb on + strand, within MPMX19_03438 at 834.130 kb on + strand, within MPMX19_03438 at 834.130 kb on + strand, within MPMX19_03438 at 834.131 kb on - strand, within MPMX19_03438 at 834.131 kb on - strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.212 kb on - strand, within MPMX19_03438 at 834.212 kb on - strand, within MPMX19_03438 at 834.212 kb on - strand, within MPMX19_03438 at 834.220 kb on + strand at 834.220 kb on + strand at 834.221 kb on - strand at 834.221 kb on - strand at 834.221 kb on - strand at 834.221 kb on - strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.294 kb on - strand at 834.294 kb on - strand at 834.411 kb on + strand, within MPMX19_03439 at 834.412 kb on - strand, within MPMX19_03439 at 834.412 kb on - strand, within MPMX19_03439 at 834.412 kb on - strand, within MPMX19_03439 at 834.825 kb on + strand at 834.825 kb on + strand at 834.825 kb on + strand at 834.825 kb on + strand at 834.825 kb on + strand at 834.825 kb on + strand at 834.825 kb on + strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.891 kb on + strand at 834.891 kb on + strand at 834.891 kb on + strand at 834.891 kb on + strand at 834.892 kb on - strand at 834.892 kb on - strand at 834.892 kb on - strand at 834.892 kb on - strand at 834.892 kb on - strand at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.049 kb on - strand, within MPMX19_03440 at 835.049 kb on - strand, within MPMX19_03440 at 835.049 kb on - strand, within MPMX19_03440 at 835.049 kb on - strand, within MPMX19_03440 at 835.049 kb on - strand, within MPMX19_03440 at 835.165 kb on + strand, within MPMX19_03440 at 835.165 kb on + strand, within MPMX19_03440 at 835.166 kb on - strand, within MPMX19_03440 at 835.166 kb on - strand, within MPMX19_03440 at 835.166 kb on - strand, within MPMX19_03440 at 835.166 kb on - strand, within MPMX19_03440 at 835.260 kb on + strand, within MPMX19_03440 at 835.261 kb on - strand, within MPMX19_03440 at 835.261 kb on - strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.342 kb on + strand, within MPMX19_03440 at 835.384 kb on + strand, within MPMX19_03440 at 835.384 kb on + strand, within MPMX19_03440 at 835.384 kb on + strand, within MPMX19_03440 at 835.385 kb on - strand, within MPMX19_03440 at 835.385 kb on - strand, within MPMX19_03440 at 835.385 kb on - strand, within MPMX19_03440 at 835.385 kb on - strand, within MPMX19_03440 at 835.396 kb on + strand, within MPMX19_03440 at 835.396 kb on + strand, within MPMX19_03440 at 835.396 kb on + strand, within MPMX19_03440 at 835.397 kb on - strand, within MPMX19_03440 at 835.397 kb on - strand, within MPMX19_03440 at 835.397 kb on - strand, within MPMX19_03440 at 835.397 kb on - strand, within MPMX19_03440 at 835.487 kb on - strand, within MPMX19_03440 at 835.487 kb on - strand, within MPMX19_03440 at 835.487 kb on - strand, within MPMX19_03440 at 835.487 kb on - strand, within MPMX19_03440 at 835.615 kb on + strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.738 kb on + strand, within MPMX19_03440 at 835.739 kb on - strand, within MPMX19_03440 at 835.739 kb on - strand, within MPMX19_03440 at 835.739 kb on - strand, within MPMX19_03440 at 835.804 kb on + strand at 835.804 kb on + strand at 835.804 kb on + strand at 835.805 kb on - strand at 835.805 kb on - strand at 835.805 kb on - strand at 835.837 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 833,494 - MPMX19_03437 0.83 -0.1 833,521 - MPMX19_03437 0.86 +0.9 833,557 - MPMX19_03437 0.89 +0.4 833,557 - MPMX19_03437 0.89 -0.6 833,557 - MPMX19_03437 0.89 +0.3 833,607 + +1.2 833,607 + +0.5 833,608 - -1.7 833,608 - +1.6 833,608 - -0.6 833,608 - -1.5 833,704 + -1.4 833,705 - +0.1 833,741 - -0.7 833,741 - -1.2 833,836 + MPMX19_03438 0.25 -0.1 833,836 + MPMX19_03438 0.25 -0.3 833,836 + MPMX19_03438 0.25 -1.5 833,836 + MPMX19_03438 0.25 +0.9 833,837 - MPMX19_03438 0.25 -0.4 833,837 - MPMX19_03438 0.25 +0.1 833,837 - MPMX19_03438 0.25 -0.4 833,837 - MPMX19_03438 0.25 +0.1 833,846 - MPMX19_03438 0.27 -1.5 833,872 + MPMX19_03438 0.31 -0.4 833,872 + MPMX19_03438 0.31 -1.7 833,872 + MPMX19_03438 0.31 -1.2 833,872 + MPMX19_03438 0.31 -1.7 833,873 - MPMX19_03438 0.31 +2.1 833,873 - MPMX19_03438 0.31 -0.0 833,873 - MPMX19_03438 0.31 -1.3 833,873 - MPMX19_03438 0.31 +0.6 833,873 - MPMX19_03438 0.31 -0.5 833,873 - MPMX19_03438 0.31 +0.6 833,873 - MPMX19_03438 0.31 -1.8 834,013 + MPMX19_03438 0.55 -0.8 834,013 + MPMX19_03438 0.55 -0.2 834,013 + MPMX19_03438 0.55 +0.4 834,013 + MPMX19_03438 0.55 +0.4 834,013 + MPMX19_03438 0.55 +0.8 834,014 - MPMX19_03438 0.55 -0.6 834,014 - MPMX19_03438 0.55 -0.7 834,014 - MPMX19_03438 0.55 -0.6 834,014 - MPMX19_03438 0.55 +0.4 834,014 - MPMX19_03438 0.55 -1.1 834,014 - MPMX19_03438 0.55 -1.5 834,014 - MPMX19_03438 0.55 +0.0 834,130 + MPMX19_03438 0.75 +1.2 834,130 + MPMX19_03438 0.75 -2.1 834,130 + MPMX19_03438 0.75 -1.9 834,131 - MPMX19_03438 0.75 +0.1 834,131 - MPMX19_03438 0.75 +0.4 834,211 + MPMX19_03438 0.88 +0.2 834,211 + MPMX19_03438 0.88 -2.0 834,211 + MPMX19_03438 0.88 -0.9 834,211 + MPMX19_03438 0.88 +0.3 834,211 + MPMX19_03438 0.88 -0.7 834,211 + MPMX19_03438 0.88 +0.9 834,211 + MPMX19_03438 0.88 +0.9 834,211 + MPMX19_03438 0.88 -0.4 834,211 + MPMX19_03438 0.88 +1.6 834,211 + MPMX19_03438 0.88 -0.5 834,212 - MPMX19_03438 0.89 -1.2 834,212 - MPMX19_03438 0.89 -0.1 834,212 - MPMX19_03438 0.89 -0.1 834,220 + -1.8 834,220 + -2.2 834,221 - -2.1 834,221 - +0.3 834,221 - -0.7 834,221 - -0.9 834,290 + +0.4 834,290 + +1.1 834,290 + -1.2 834,290 + +0.1 834,290 + -0.0 834,291 - +0.2 834,291 - -0.7 834,291 - -1.7 834,291 - -0.5 834,291 - -0.8 834,293 + -0.6 834,293 + +0.1 834,293 + +1.6 834,293 + -0.1 834,293 + -2.1 834,293 + +0.2 834,293 + +0.1 834,293 + -0.9 834,293 + -0.9 834,294 - -0.1 834,294 - -1.2 834,411 + MPMX19_03439 0.23 -1.2 834,412 - MPMX19_03439 0.23 -0.7 834,412 - MPMX19_03439 0.23 -0.8 834,412 - MPMX19_03439 0.23 -0.9 834,825 + +0.3 834,825 + -0.9 834,825 + -0.5 834,825 + +0.4 834,825 + -0.2 834,825 + -0.3 834,825 + -0.4 834,826 - -0.7 834,826 - -2.4 834,826 - +0.8 834,826 - -0.5 834,826 - -0.5 834,826 - +0.8 834,826 - +0.2 834,826 - -0.8 834,826 - +1.6 834,826 - +0.2 834,826 - -0.9 834,826 - +0.5 834,826 - -2.4 834,891 + -0.1 834,891 + -0.2 834,891 + -0.8 834,891 + -0.3 834,892 - -1.4 834,892 - -1.4 834,892 - -0.6 834,892 - -0.4 834,892 - -0.2 834,991 + MPMX19_03440 0.11 +0.4 834,991 + MPMX19_03440 0.11 +0.1 834,991 + MPMX19_03440 0.11 +0.7 834,991 + MPMX19_03440 0.11 -0.9 834,991 + MPMX19_03440 0.11 -1.2 834,991 + MPMX19_03440 0.11 -1.0 834,991 + MPMX19_03440 0.11 -0.7 834,991 + MPMX19_03440 0.11 +0.4 834,991 + MPMX19_03440 0.11 +0.3 834,991 + MPMX19_03440 0.11 -0.2 834,991 + MPMX19_03440 0.11 -0.4 834,991 + MPMX19_03440 0.11 -0.2 834,991 + MPMX19_03440 0.11 -0.4 834,991 + MPMX19_03440 0.11 +0.1 834,991 + MPMX19_03440 0.11 +1.4 834,991 + MPMX19_03440 0.11 -0.1 834,992 - MPMX19_03440 0.11 +0.5 834,992 - MPMX19_03440 0.11 +0.4 834,992 - MPMX19_03440 0.11 -0.4 834,992 - MPMX19_03440 0.11 -0.1 834,992 - MPMX19_03440 0.11 +1.7 834,992 - MPMX19_03440 0.11 -0.8 835,048 + MPMX19_03440 0.17 -0.2 835,048 + MPMX19_03440 0.17 +0.3 835,048 + MPMX19_03440 0.17 -1.2 835,048 + MPMX19_03440 0.17 -1.3 835,048 + MPMX19_03440 0.17 +0.1 835,048 + MPMX19_03440 0.17 +0.1 835,048 + MPMX19_03440 0.17 -1.0 835,049 - MPMX19_03440 0.17 -0.9 835,049 - MPMX19_03440 0.17 +0.9 835,049 - MPMX19_03440 0.17 -0.2 835,049 - MPMX19_03440 0.17 +0.5 835,049 - MPMX19_03440 0.17 +0.1 835,165 + MPMX19_03440 0.29 -0.4 835,165 + MPMX19_03440 0.29 -2.9 835,166 - MPMX19_03440 0.29 +0.5 835,166 - MPMX19_03440 0.29 +1.7 835,166 - MPMX19_03440 0.29 -0.9 835,166 - MPMX19_03440 0.29 -0.8 835,260 + MPMX19_03440 0.39 -2.7 835,261 - MPMX19_03440 0.39 +0.7 835,261 - MPMX19_03440 0.39 +0.3 835,288 + MPMX19_03440 0.42 -0.5 835,288 + MPMX19_03440 0.42 -0.1 835,288 + MPMX19_03440 0.42 -0.6 835,288 + MPMX19_03440 0.42 -0.1 835,288 + MPMX19_03440 0.42 -1.4 835,288 + MPMX19_03440 0.42 -0.7 835,288 + MPMX19_03440 0.42 +1.7 835,289 - MPMX19_03440 0.42 -1.8 835,289 - MPMX19_03440 0.42 -0.8 835,289 - MPMX19_03440 0.42 +0.2 835,289 - MPMX19_03440 0.42 +1.7 835,289 - MPMX19_03440 0.42 -0.4 835,289 - MPMX19_03440 0.42 +0.8 835,289 - MPMX19_03440 0.42 +0.5 835,289 - MPMX19_03440 0.42 -1.8 835,289 - MPMX19_03440 0.42 -0.5 835,289 - MPMX19_03440 0.42 +0.4 835,289 - MPMX19_03440 0.42 -1.5 835,289 - MPMX19_03440 0.42 -0.2 835,342 + MPMX19_03440 0.48 -1.9 835,384 + MPMX19_03440 0.52 -1.0 835,384 + MPMX19_03440 0.52 -0.3 835,384 + MPMX19_03440 0.52 -2.0 835,385 - MPMX19_03440 0.52 -1.2 835,385 - MPMX19_03440 0.52 +0.3 835,385 - MPMX19_03440 0.52 -0.9 835,385 - MPMX19_03440 0.52 -0.0 835,396 + MPMX19_03440 0.53 +1.1 835,396 + MPMX19_03440 0.53 -0.2 835,396 + MPMX19_03440 0.53 -2.7 835,397 - MPMX19_03440 0.54 -0.9 835,397 - MPMX19_03440 0.54 -0.9 835,397 - MPMX19_03440 0.54 -1.0 835,397 - MPMX19_03440 0.54 -0.5 835,487 - MPMX19_03440 0.63 -0.0 835,487 - MPMX19_03440 0.63 +0.1 835,487 - MPMX19_03440 0.63 -0.7 835,487 - MPMX19_03440 0.63 -1.7 835,615 + MPMX19_03440 0.76 +0.7 835,616 - MPMX19_03440 0.77 +0.3 835,616 - MPMX19_03440 0.77 -0.0 835,616 - MPMX19_03440 0.77 -1.5 835,616 - MPMX19_03440 0.77 -1.7 835,616 - MPMX19_03440 0.77 -0.2 835,616 - MPMX19_03440 0.77 -0.1 835,738 + MPMX19_03440 0.89 +0.4 835,739 - MPMX19_03440 0.89 -0.7 835,739 - MPMX19_03440 0.89 -1.5 835,739 - MPMX19_03440 0.89 +0.8 835,804 + -1.0 835,804 + -1.7 835,804 + +1.5 835,805 - +0.1 835,805 - -1.4 835,805 - -0.9 835,837 + -1.4
Or see this region's nucleotide sequence