Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03154 and MPMX19_03155 are separated by 86 nucleotides MPMX19_03155 and MPMX19_03156 are separated by 3 nucleotides MPMX19_03156 and MPMX19_03157 overlap by 4 nucleotides MPMX19_03157 and MPMX19_03158 are separated by 115 nucleotides
MPMX19_03154: MPMX19_03154 - hypothetical protein, at 448,952 to 449,413
_03154
MPMX19_03155: MPMX19_03155 - hypothetical protein, at 449,500 to 449,760
_03155
MPMX19_03156: MPMX19_03156 - Ribonuclease VapC28, at 449,764 to 450,153
_03156
MPMX19_03157: MPMX19_03157 - hypothetical protein, at 450,150 to 450,281
_03157
MPMX19_03158: MPMX19_03158 - putative protein YcjX, at 450,397 to 451,791
_03158
Position (kb) 450
451 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 449.234 kb on + strand, within MPMX19_03154 at 449.234 kb on + strand, within MPMX19_03154 at 449.234 kb on + strand, within MPMX19_03154 at 449.234 kb on + strand, within MPMX19_03154 at 449.235 kb on - strand, within MPMX19_03154 at 449.235 kb on - strand, within MPMX19_03154 at 449.235 kb on - strand, within MPMX19_03154 at 449.235 kb on - strand, within MPMX19_03154 at 449.235 kb on - strand, within MPMX19_03154 at 449.255 kb on + strand, within MPMX19_03154 at 449.255 kb on + strand, within MPMX19_03154 at 449.255 kb on + strand, within MPMX19_03154 at 449.255 kb on + strand, within MPMX19_03154 at 449.255 kb on + strand, within MPMX19_03154 at 449.255 kb on + strand, within MPMX19_03154 at 449.255 kb on + strand, within MPMX19_03154 at 449.256 kb on - strand, within MPMX19_03154 at 449.330 kb on + strand, within MPMX19_03154 at 449.330 kb on + strand, within MPMX19_03154 at 449.330 kb on + strand, within MPMX19_03154 at 449.330 kb on + strand, within MPMX19_03154 at 449.330 kb on + strand, within MPMX19_03154 at 449.330 kb on + strand, within MPMX19_03154 at 449.330 kb on + strand, within MPMX19_03154 at 449.331 kb on - strand, within MPMX19_03154 at 449.331 kb on - strand, within MPMX19_03154 at 449.331 kb on - strand, within MPMX19_03154 at 449.331 kb on - strand, within MPMX19_03154 at 449.331 kb on - strand, within MPMX19_03154 at 449.331 kb on - strand, within MPMX19_03154 at 449.331 kb on - strand, within MPMX19_03154 at 449.331 kb on - strand, within MPMX19_03154 at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.399 kb on + strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.400 kb on - strand at 449.401 kb on + strand at 449.401 kb on + strand at 449.401 kb on + strand at 449.401 kb on + strand at 449.401 kb on + strand at 449.402 kb on - strand at 449.402 kb on - strand at 449.402 kb on - strand at 449.402 kb on - strand at 449.402 kb on - strand at 449.402 kb on - strand at 449.670 kb on + strand, within MPMX19_03155 at 449.670 kb on + strand, within MPMX19_03155 at 449.670 kb on + strand, within MPMX19_03155 at 449.670 kb on + strand, within MPMX19_03155 at 449.670 kb on + strand, within MPMX19_03155 at 449.670 kb on + strand, within MPMX19_03155 at 449.670 kb on + strand, within MPMX19_03155 at 449.671 kb on - strand, within MPMX19_03155 at 449.671 kb on - strand, within MPMX19_03155 at 449.671 kb on - strand, within MPMX19_03155 at 449.671 kb on - strand, within MPMX19_03155 at 449.671 kb on - strand, within MPMX19_03155 at 449.671 kb on - strand, within MPMX19_03155 at 449.671 kb on - strand, within MPMX19_03155 at 449.734 kb on + strand, within MPMX19_03155 at 449.734 kb on + strand, within MPMX19_03155 at 449.734 kb on + strand, within MPMX19_03155 at 449.735 kb on - strand at 449.735 kb on - strand at 449.735 kb on - strand at 449.735 kb on - strand at 449.775 kb on + strand at 449.775 kb on + strand at 449.775 kb on + strand at 449.776 kb on - strand at 449.776 kb on - strand at 449.776 kb on - strand at 449.776 kb on - strand at 450.019 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.055 kb on + strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.056 kb on - strand, within MPMX19_03156 at 450.073 kb on + strand, within MPMX19_03156 at 450.074 kb on - strand, within MPMX19_03156 at 450.161 kb on + strand at 450.161 kb on + strand at 450.161 kb on + strand at 450.162 kb on - strand at 450.162 kb on - strand at 450.162 kb on - strand at 450.217 kb on + strand, within MPMX19_03157 at 450.217 kb on + strand, within MPMX19_03157 at 450.217 kb on + strand, within MPMX19_03157 at 450.217 kb on + strand, within MPMX19_03157 at 450.217 kb on + strand, within MPMX19_03157 at 450.218 kb on - strand, within MPMX19_03157 at 450.218 kb on - strand, within MPMX19_03157 at 450.359 kb on + strand at 450.359 kb on + strand at 450.360 kb on - strand at 450.360 kb on - strand at 450.360 kb on - strand at 450.360 kb on - strand at 450.360 kb on - strand at 450.360 kb on - strand at 450.360 kb on - strand at 450.360 kb on - strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.361 kb on + strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.362 kb on - strand at 450.424 kb on + strand at 450.424 kb on + strand at 450.424 kb on + strand at 450.425 kb on - strand at 450.425 kb on - strand at 450.425 kb on - strand at 450.425 kb on - strand at 450.724 kb on + strand, within MPMX19_03158 at 450.724 kb on + strand, within MPMX19_03158 at 450.793 kb on + strand, within MPMX19_03158 at 450.793 kb on + strand, within MPMX19_03158 at 450.982 kb on + strand, within MPMX19_03158 at 450.982 kb on + strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 451.166 kb on - strand, within MPMX19_03158 at 451.174 kb on + strand, within MPMX19_03158 at 451.174 kb on + strand, within MPMX19_03158 at 451.174 kb on + strand, within MPMX19_03158 at 451.174 kb on + strand, within MPMX19_03158 at 451.175 kb on - strand, within MPMX19_03158 at 451.175 kb on - strand, within MPMX19_03158
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 449,234 + MPMX19_03154 0.61 -0.3 449,234 + MPMX19_03154 0.61 -0.5 449,234 + MPMX19_03154 0.61 -1.3 449,234 + MPMX19_03154 0.61 -0.4 449,235 - MPMX19_03154 0.61 -0.1 449,235 - MPMX19_03154 0.61 +0.8 449,235 - MPMX19_03154 0.61 +0.9 449,235 - MPMX19_03154 0.61 -1.6 449,235 - MPMX19_03154 0.61 +0.7 449,255 + MPMX19_03154 0.66 -0.5 449,255 + MPMX19_03154 0.66 +0.4 449,255 + MPMX19_03154 0.66 +0.0 449,255 + MPMX19_03154 0.66 -0.7 449,255 + MPMX19_03154 0.66 -0.9 449,255 + MPMX19_03154 0.66 +0.1 449,255 + MPMX19_03154 0.66 -0.8 449,256 - MPMX19_03154 0.66 -0.1 449,330 + MPMX19_03154 0.82 -2.0 449,330 + MPMX19_03154 0.82 -1.6 449,330 + MPMX19_03154 0.82 -1.1 449,330 + MPMX19_03154 0.82 -0.6 449,330 + MPMX19_03154 0.82 +0.7 449,330 + MPMX19_03154 0.82 -2.4 449,330 + MPMX19_03154 0.82 +0.1 449,331 - MPMX19_03154 0.82 +0.6 449,331 - MPMX19_03154 0.82 +0.4 449,331 - MPMX19_03154 0.82 -1.1 449,331 - MPMX19_03154 0.82 -0.9 449,331 - MPMX19_03154 0.82 -0.3 449,331 - MPMX19_03154 0.82 -0.7 449,331 - MPMX19_03154 0.82 -1.5 449,331 - MPMX19_03154 0.82 +0.2 449,399 + +0.3 449,399 + -1.0 449,399 + -1.2 449,399 + -0.5 449,399 + -0.7 449,399 + -0.9 449,399 + +0.1 449,399 + +1.0 449,399 + -0.1 449,399 + -0.6 449,399 + -0.8 449,399 + -1.1 449,399 + +0.5 449,399 + -0.2 449,399 + -0.5 449,399 + -0.7 449,399 + -2.6 449,399 + -0.3 449,400 - -0.3 449,400 - -1.0 449,400 - +0.1 449,400 - -2.3 449,400 - -0.4 449,400 - -2.6 449,400 - -0.6 449,400 - +0.5 449,400 - +1.4 449,400 - -1.1 449,400 - -0.9 449,400 - -1.3 449,400 - -2.3 449,400 - -0.8 449,400 - -1.3 449,400 - -0.0 449,400 - +0.1 449,401 + -0.3 449,401 + -1.6 449,401 + -1.8 449,401 + +0.1 449,401 + +1.1 449,402 - -1.5 449,402 - -0.4 449,402 - -2.3 449,402 - +0.7 449,402 - -1.6 449,402 - +0.3 449,670 + MPMX19_03155 0.65 +1.4 449,670 + MPMX19_03155 0.65 -0.5 449,670 + MPMX19_03155 0.65 -2.9 449,670 + MPMX19_03155 0.65 -0.8 449,670 + MPMX19_03155 0.65 -0.5 449,670 + MPMX19_03155 0.65 -0.7 449,670 + MPMX19_03155 0.65 -1.6 449,671 - MPMX19_03155 0.66 -1.5 449,671 - MPMX19_03155 0.66 +0.1 449,671 - MPMX19_03155 0.66 +0.5 449,671 - MPMX19_03155 0.66 +0.5 449,671 - MPMX19_03155 0.66 -0.2 449,671 - MPMX19_03155 0.66 -0.2 449,671 - MPMX19_03155 0.66 -0.6 449,734 + MPMX19_03155 0.90 -0.7 449,734 + MPMX19_03155 0.90 +0.7 449,734 + MPMX19_03155 0.90 +0.3 449,735 - -0.6 449,735 - -3.2 449,735 - -1.5 449,735 - -2.4 449,775 + -1.2 449,775 + +0.7 449,775 + -1.3 449,776 - -0.6 449,776 - -1.2 449,776 - -0.9 449,776 - +0.4 450,019 + MPMX19_03156 0.65 -0.1 450,055 + MPMX19_03156 0.75 +1.7 450,055 + MPMX19_03156 0.75 -0.3 450,055 + MPMX19_03156 0.75 -0.1 450,055 + MPMX19_03156 0.75 +0.6 450,055 + MPMX19_03156 0.75 +1.3 450,055 + MPMX19_03156 0.75 +0.0 450,055 + MPMX19_03156 0.75 -0.3 450,055 + MPMX19_03156 0.75 -1.5 450,055 + MPMX19_03156 0.75 +0.1 450,055 + MPMX19_03156 0.75 +2.4 450,056 - MPMX19_03156 0.75 +1.0 450,056 - MPMX19_03156 0.75 -2.8 450,056 - MPMX19_03156 0.75 -2.0 450,056 - MPMX19_03156 0.75 +0.7 450,056 - MPMX19_03156 0.75 -0.3 450,056 - MPMX19_03156 0.75 -0.0 450,056 - MPMX19_03156 0.75 -2.7 450,056 - MPMX19_03156 0.75 -1.5 450,056 - MPMX19_03156 0.75 -2.1 450,073 + MPMX19_03156 0.79 -1.0 450,074 - MPMX19_03156 0.79 +0.0 450,161 + -1.2 450,161 + -1.3 450,161 + -0.1 450,162 - -0.8 450,162 - -0.6 450,162 - -1.1 450,217 + MPMX19_03157 0.51 -1.6 450,217 + MPMX19_03157 0.51 -0.1 450,217 + MPMX19_03157 0.51 -0.1 450,217 + MPMX19_03157 0.51 -0.9 450,217 + MPMX19_03157 0.51 -1.5 450,218 - MPMX19_03157 0.52 -1.8 450,218 - MPMX19_03157 0.52 -0.3 450,359 + -0.0 450,359 + -0.5 450,360 - -0.9 450,360 - -0.3 450,360 - -0.1 450,360 - -0.0 450,360 - -0.4 450,360 - -0.0 450,360 - -2.1 450,360 - -1.8 450,361 + +0.4 450,361 + +0.4 450,361 + -0.8 450,361 + -1.7 450,361 + -0.5 450,361 + +0.5 450,361 + +0.7 450,361 + -2.1 450,361 + -1.5 450,361 + +0.9 450,361 + -0.0 450,361 + -1.2 450,361 + -0.9 450,361 + +0.3 450,361 + +0.6 450,361 + -0.4 450,361 + +0.1 450,361 + +0.1 450,361 + -1.0 450,361 + -1.1 450,361 + -2.7 450,361 + -0.3 450,361 + -0.5 450,361 + -1.6 450,361 + -1.2 450,361 + -2.3 450,362 - -0.7 450,362 - -0.6 450,362 - -1.9 450,362 - -1.5 450,362 - -0.3 450,362 - -0.4 450,362 - -0.7 450,362 - -0.6 450,362 - -1.7 450,362 - -0.4 450,362 - -1.0 450,362 - -0.5 450,362 - +0.4 450,362 - -0.1 450,362 - -1.1 450,362 - -0.9 450,362 - -1.5 450,362 - -0.9 450,362 - -1.1 450,362 - +1.0 450,362 - -0.6 450,362 - -1.0 450,362 - -1.0 450,362 - -1.5 450,362 - +1.1 450,362 - -1.5 450,362 - -0.3 450,424 + -0.1 450,424 + -0.8 450,424 + +0.2 450,425 - -1.1 450,425 - -1.1 450,425 - -0.8 450,425 - -1.0 450,724 + MPMX19_03158 0.23 +1.5 450,724 + MPMX19_03158 0.23 +1.3 450,793 + MPMX19_03158 0.28 +0.3 450,793 + MPMX19_03158 0.28 -1.5 450,982 + MPMX19_03158 0.42 -0.3 450,982 + MPMX19_03158 0.42 -0.8 450,983 - MPMX19_03158 0.42 -0.9 450,983 - MPMX19_03158 0.42 +0.5 450,983 - MPMX19_03158 0.42 -0.6 450,983 - MPMX19_03158 0.42 -0.0 450,983 - MPMX19_03158 0.42 -0.1 450,983 - MPMX19_03158 0.42 -0.0 450,991 + MPMX19_03158 0.43 -0.4 450,991 + MPMX19_03158 0.43 -0.1 450,991 + MPMX19_03158 0.43 -0.7 450,991 + MPMX19_03158 0.43 +1.4 450,991 + MPMX19_03158 0.43 -1.3 450,991 + MPMX19_03158 0.43 -0.2 450,992 - MPMX19_03158 0.43 +0.0 450,992 - MPMX19_03158 0.43 +0.2 450,992 - MPMX19_03158 0.43 +0.2 450,992 - MPMX19_03158 0.43 -1.6 450,992 - MPMX19_03158 0.43 -1.8 450,992 - MPMX19_03158 0.43 -0.8 450,992 - MPMX19_03158 0.43 -1.8 450,992 - MPMX19_03158 0.43 -0.9 451,166 - MPMX19_03158 0.55 +0.3 451,174 + MPMX19_03158 0.56 +0.1 451,174 + MPMX19_03158 0.56 -1.3 451,174 + MPMX19_03158 0.56 +0.2 451,174 + MPMX19_03158 0.56 -1.3 451,175 - MPMX19_03158 0.56 -0.9 451,175 - MPMX19_03158 0.56 -0.5
Or see this region's nucleotide sequence