Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03139 and MPMX19_03140 are separated by 150 nucleotides MPMX19_03140 and MPMX19_03141 are separated by 106 nucleotides MPMX19_03141 and MPMX19_03142 are separated by 159 nucleotides
MPMX19_03139: MPMX19_03139 - 23S ribosomal RNA, at 427,284 to 430,017
_03139
MPMX19_03140: MPMX19_03140 - 5S ribosomal RNA, at 430,168 to 430,278
_03140
MPMX19_03141: MPMX19_03141 - hypothetical protein, at 430,385 to 430,804
_03141
MPMX19_03142: MPMX19_03142 - Putative thiamine pyrophosphate-containing protein YdaP, at 430,964 to 432,766
_03142
Position (kb) 430
431 Strain fitness (log2 ratio) -2
-1
0
1 at 430.383 kb on + strand at 430.758 kb on + strand, within MPMX19_03141 at 430.758 kb on + strand, within MPMX19_03141 at 430.758 kb on + strand, within MPMX19_03141 at 430.759 kb on - strand, within MPMX19_03141 at 430.759 kb on - strand, within MPMX19_03141 at 430.759 kb on - strand, within MPMX19_03141 at 430.759 kb on - strand, within MPMX19_03141 at 430.832 kb on - strand at 431.153 kb on + strand, within MPMX19_03142 at 431.153 kb on + strand, within MPMX19_03142 at 431.153 kb on + strand, within MPMX19_03142 at 431.153 kb on + strand, within MPMX19_03142 at 431.153 kb on + strand, within MPMX19_03142 at 431.153 kb on + strand, within MPMX19_03142 at 431.153 kb on + strand, within MPMX19_03142 at 431.153 kb on + strand, within MPMX19_03142 at 431.153 kb on + strand, within MPMX19_03142 at 431.153 kb on + strand, within MPMX19_03142 at 431.154 kb on - strand, within MPMX19_03142 at 431.154 kb on - strand, within MPMX19_03142 at 431.154 kb on - strand, within MPMX19_03142 at 431.154 kb on - strand, within MPMX19_03142 at 431.154 kb on - strand, within MPMX19_03142 at 431.154 kb on - strand, within MPMX19_03142 at 431.154 kb on - strand, within MPMX19_03142 at 431.154 kb on - strand, within MPMX19_03142 at 431.154 kb on - strand, within MPMX19_03142 at 431.154 kb on - strand, within MPMX19_03142 at 431.154 kb on - strand, within MPMX19_03142 at 431.154 kb on - strand, within MPMX19_03142 at 431.222 kb on + strand, within MPMX19_03142 at 431.222 kb on + strand, within MPMX19_03142 at 431.222 kb on + strand, within MPMX19_03142 at 431.222 kb on + strand, within MPMX19_03142 at 431.222 kb on + strand, within MPMX19_03142 at 431.222 kb on + strand, within MPMX19_03142 at 431.222 kb on + strand, within MPMX19_03142 at 431.222 kb on + strand, within MPMX19_03142 at 431.222 kb on + strand, within MPMX19_03142 at 431.223 kb on - strand, within MPMX19_03142 at 431.223 kb on - strand, within MPMX19_03142 at 431.223 kb on - strand, within MPMX19_03142 at 431.223 kb on - strand, within MPMX19_03142 at 431.223 kb on - strand, within MPMX19_03142 at 431.223 kb on - strand, within MPMX19_03142 at 431.223 kb on - strand, within MPMX19_03142 at 431.223 kb on - strand, within MPMX19_03142 at 431.223 kb on - strand, within MPMX19_03142 at 431.297 kb on + strand, within MPMX19_03142 at 431.297 kb on + strand, within MPMX19_03142 at 431.298 kb on - strand, within MPMX19_03142 at 431.348 kb on + strand, within MPMX19_03142 at 431.348 kb on + strand, within MPMX19_03142 at 431.348 kb on + strand, within MPMX19_03142 at 431.348 kb on + strand, within MPMX19_03142 at 431.349 kb on - strand, within MPMX19_03142 at 431.349 kb on - strand, within MPMX19_03142 at 431.349 kb on - strand, within MPMX19_03142 at 431.349 kb on - strand, within MPMX19_03142 at 431.349 kb on - strand, within MPMX19_03142 at 431.349 kb on - strand, within MPMX19_03142 at 431.349 kb on - strand, within MPMX19_03142 at 431.349 kb on - strand, within MPMX19_03142 at 431.349 kb on - strand, within MPMX19_03142 at 431.765 kb on + strand, within MPMX19_03142 at 431.765 kb on + strand, within MPMX19_03142 at 431.765 kb on + strand, within MPMX19_03142 at 431.766 kb on - strand, within MPMX19_03142 at 431.766 kb on - strand, within MPMX19_03142 at 431.766 kb on - strand, within MPMX19_03142 at 431.766 kb on - strand, within MPMX19_03142 at 431.766 kb on - strand, within MPMX19_03142
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 430,383 + +0.1 430,758 + MPMX19_03141 0.89 -1.1 430,758 + MPMX19_03141 0.89 -0.5 430,758 + MPMX19_03141 0.89 +0.2 430,759 - MPMX19_03141 0.89 -0.6 430,759 - MPMX19_03141 0.89 -2.5 430,759 - MPMX19_03141 0.89 -0.8 430,759 - MPMX19_03141 0.89 -1.5 430,832 - +0.2 431,153 + MPMX19_03142 0.10 -1.0 431,153 + MPMX19_03142 0.10 -1.0 431,153 + MPMX19_03142 0.10 -0.9 431,153 + MPMX19_03142 0.10 -0.5 431,153 + MPMX19_03142 0.10 -1.0 431,153 + MPMX19_03142 0.10 -1.6 431,153 + MPMX19_03142 0.10 -1.6 431,153 + MPMX19_03142 0.10 -1.5 431,153 + MPMX19_03142 0.10 -0.6 431,153 + MPMX19_03142 0.10 -0.1 431,154 - MPMX19_03142 0.11 -1.4 431,154 - MPMX19_03142 0.11 -0.2 431,154 - MPMX19_03142 0.11 -1.4 431,154 - MPMX19_03142 0.11 -0.6 431,154 - MPMX19_03142 0.11 -0.5 431,154 - MPMX19_03142 0.11 +0.7 431,154 - MPMX19_03142 0.11 +1.1 431,154 - MPMX19_03142 0.11 -0.3 431,154 - MPMX19_03142 0.11 -0.4 431,154 - MPMX19_03142 0.11 +0.7 431,154 - MPMX19_03142 0.11 -0.5 431,154 - MPMX19_03142 0.11 -1.8 431,222 + MPMX19_03142 0.14 -0.4 431,222 + MPMX19_03142 0.14 -2.3 431,222 + MPMX19_03142 0.14 -0.5 431,222 + MPMX19_03142 0.14 -2.0 431,222 + MPMX19_03142 0.14 +0.9 431,222 + MPMX19_03142 0.14 -1.1 431,222 + MPMX19_03142 0.14 +0.1 431,222 + MPMX19_03142 0.14 -0.3 431,222 + MPMX19_03142 0.14 +0.9 431,223 - MPMX19_03142 0.14 +0.4 431,223 - MPMX19_03142 0.14 -0.6 431,223 - MPMX19_03142 0.14 -2.0 431,223 - MPMX19_03142 0.14 -0.8 431,223 - MPMX19_03142 0.14 -0.8 431,223 - MPMX19_03142 0.14 -1.2 431,223 - MPMX19_03142 0.14 +0.5 431,223 - MPMX19_03142 0.14 -0.4 431,223 - MPMX19_03142 0.14 -0.3 431,297 + MPMX19_03142 0.18 -0.3 431,297 + MPMX19_03142 0.18 +1.1 431,298 - MPMX19_03142 0.19 +0.2 431,348 + MPMX19_03142 0.21 -0.3 431,348 + MPMX19_03142 0.21 -0.2 431,348 + MPMX19_03142 0.21 -1.6 431,348 + MPMX19_03142 0.21 +1.4 431,349 - MPMX19_03142 0.21 -1.0 431,349 - MPMX19_03142 0.21 -1.5 431,349 - MPMX19_03142 0.21 +0.7 431,349 - MPMX19_03142 0.21 +0.3 431,349 - MPMX19_03142 0.21 -1.1 431,349 - MPMX19_03142 0.21 -0.3 431,349 - MPMX19_03142 0.21 -0.3 431,349 - MPMX19_03142 0.21 -2.1 431,349 - MPMX19_03142 0.21 -0.3 431,765 + MPMX19_03142 0.44 +0.6 431,765 + MPMX19_03142 0.44 -0.8 431,765 + MPMX19_03142 0.44 -1.3 431,766 - MPMX19_03142 0.44 -0.6 431,766 - MPMX19_03142 0.44 -0.3 431,766 - MPMX19_03142 0.44 +1.0 431,766 - MPMX19_03142 0.44 -0.9 431,766 - MPMX19_03142 0.44 -1.6
Or see this region's nucleotide sequence