Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03127 and MPMX19_03128 are separated by 59 nucleotides MPMX19_03128 and MPMX19_03129 are separated by 357 nucleotides MPMX19_03129 and MPMX19_03130 are separated by 95 nucleotides
MPMX19_03127: MPMX19_03127 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 414,430 to 415,404
_03127
MPMX19_03128: MPMX19_03128 - hypothetical protein, at 415,464 to 416,042
_03128
MPMX19_03129: MPMX19_03129 - Citrate/malate transporter, at 416,400 to 417,761
_03129
MPMX19_03130: MPMX19_03130 - Anaerobic nitric oxide reductase transcription regulator NorR, at 417,857 to 419,284
_03130
Position (kb) 416
417
418 Strain fitness (log2 ratio) -2
-1
0
1
2 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.534 kb on - strand, within MPMX19_03128 at 415.534 kb on - strand, within MPMX19_03128 at 415.534 kb on - strand, within MPMX19_03128 at 416.013 kb on - strand at 416.122 kb on + strand at 416.123 kb on - strand at 416.149 kb on + strand at 416.150 kb on - strand at 416.194 kb on + strand at 416.724 kb on + strand, within MPMX19_03129 at 416.724 kb on + strand, within MPMX19_03129 at 416.724 kb on + strand, within MPMX19_03129 at 416.724 kb on + strand, within MPMX19_03129 at 416.724 kb on + strand, within MPMX19_03129 at 416.724 kb on + strand, within MPMX19_03129 at 416.724 kb on + strand, within MPMX19_03129 at 416.724 kb on + strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.727 kb on + strand, within MPMX19_03129 at 416.727 kb on + strand, within MPMX19_03129 at 416.727 kb on + strand, within MPMX19_03129 at 416.728 kb on - strand, within MPMX19_03129 at 416.728 kb on - strand, within MPMX19_03129 at 416.728 kb on - strand, within MPMX19_03129 at 416.793 kb on + strand, within MPMX19_03129 at 416.793 kb on + strand, within MPMX19_03129 at 416.793 kb on + strand, within MPMX19_03129 at 417.030 kb on + strand, within MPMX19_03129 at 417.030 kb on + strand, within MPMX19_03129 at 417.279 kb on + strand, within MPMX19_03129 at 417.279 kb on + strand, within MPMX19_03129 at 417.279 kb on + strand, within MPMX19_03129 at 417.279 kb on + strand, within MPMX19_03129 at 417.279 kb on + strand, within MPMX19_03129 at 417.279 kb on + strand, within MPMX19_03129 at 417.280 kb on - strand, within MPMX19_03129 at 417.280 kb on - strand, within MPMX19_03129 at 417.280 kb on - strand, within MPMX19_03129 at 417.408 kb on + strand, within MPMX19_03129 at 417.408 kb on + strand, within MPMX19_03129 at 417.408 kb on + strand, within MPMX19_03129 at 417.409 kb on - strand, within MPMX19_03129 at 417.409 kb on - strand, within MPMX19_03129 at 417.409 kb on - strand, within MPMX19_03129 at 417.435 kb on + strand, within MPMX19_03129 at 417.435 kb on + strand, within MPMX19_03129 at 417.436 kb on - strand, within MPMX19_03129 at 417.582 kb on + strand, within MPMX19_03129 at 417.582 kb on + strand, within MPMX19_03129 at 417.583 kb on - strand, within MPMX19_03129 at 417.583 kb on - strand, within MPMX19_03129 at 417.583 kb on - strand, within MPMX19_03129 at 417.583 kb on - strand, within MPMX19_03129 at 417.583 kb on - strand, within MPMX19_03129 at 417.583 kb on - strand, within MPMX19_03129 at 417.903 kb on + strand at 417.903 kb on + strand at 417.914 kb on - strand at 418.119 kb on + strand, within MPMX19_03130 at 418.119 kb on + strand, within MPMX19_03130 at 418.119 kb on + strand, within MPMX19_03130 at 418.119 kb on + strand, within MPMX19_03130 at 418.119 kb on + strand, within MPMX19_03130 at 418.119 kb on + strand, within MPMX19_03130 at 418.119 kb on + strand, within MPMX19_03130 at 418.119 kb on + strand, within MPMX19_03130 at 418.119 kb on + strand, within MPMX19_03130 at 418.119 kb on + strand, within MPMX19_03130 at 418.119 kb on + strand, within MPMX19_03130 at 418.119 kb on + strand, within MPMX19_03130 at 418.119 kb on + strand, within MPMX19_03130 at 418.119 kb on + strand, within MPMX19_03130 at 418.119 kb on + strand, within MPMX19_03130 at 418.120 kb on - strand, within MPMX19_03130 at 418.120 kb on - strand, within MPMX19_03130 at 418.120 kb on - strand, within MPMX19_03130 at 418.120 kb on - strand, within MPMX19_03130 at 418.120 kb on - strand, within MPMX19_03130 at 418.120 kb on - strand, within MPMX19_03130 at 418.120 kb on - strand, within MPMX19_03130 at 418.120 kb on - strand, within MPMX19_03130 at 418.120 kb on - strand, within MPMX19_03130 at 418.120 kb on - strand, within MPMX19_03130 at 418.120 kb on - strand, within MPMX19_03130 at 418.120 kb on - strand, within MPMX19_03130 at 418.120 kb on - strand, within MPMX19_03130 at 418.326 kb on + strand, within MPMX19_03130 at 418.329 kb on + strand, within MPMX19_03130 at 418.329 kb on + strand, within MPMX19_03130 at 418.329 kb on + strand, within MPMX19_03130 at 418.329 kb on + strand, within MPMX19_03130 at 418.329 kb on + strand, within MPMX19_03130 at 418.330 kb on - strand, within MPMX19_03130 at 418.330 kb on - strand, within MPMX19_03130 at 418.330 kb on - strand, within MPMX19_03130 at 418.330 kb on - strand, within MPMX19_03130 at 418.330 kb on - strand, within MPMX19_03130 at 418.330 kb on - strand, within MPMX19_03130 at 418.576 kb on - strand, within MPMX19_03130 at 418.576 kb on - strand, within MPMX19_03130 at 418.576 kb on - strand, within MPMX19_03130 at 418.576 kb on - strand, within MPMX19_03130 at 418.576 kb on - strand, within MPMX19_03130 at 418.576 kb on - strand, within MPMX19_03130 at 418.576 kb on - strand, within MPMX19_03130 at 418.576 kb on - strand, within MPMX19_03130 at 418.576 kb on - strand, within MPMX19_03130
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 415,533 + MPMX19_03128 0.12 -1.3 415,533 + MPMX19_03128 0.12 +0.2 415,533 + MPMX19_03128 0.12 +1.1 415,533 + MPMX19_03128 0.12 +1.3 415,533 + MPMX19_03128 0.12 -1.2 415,533 + MPMX19_03128 0.12 +1.7 415,533 + MPMX19_03128 0.12 -0.2 415,533 + MPMX19_03128 0.12 +0.1 415,533 + MPMX19_03128 0.12 +0.8 415,533 + MPMX19_03128 0.12 -1.1 415,534 - MPMX19_03128 0.12 -0.3 415,534 - MPMX19_03128 0.12 -1.7 415,534 - MPMX19_03128 0.12 -1.1 416,013 - -1.5 416,122 + -0.2 416,123 - -0.3 416,149 + +0.6 416,150 - +1.0 416,194 + -1.9 416,724 + MPMX19_03129 0.24 +0.2 416,724 + MPMX19_03129 0.24 -0.7 416,724 + MPMX19_03129 0.24 -1.1 416,724 + MPMX19_03129 0.24 +0.9 416,724 + MPMX19_03129 0.24 +0.4 416,724 + MPMX19_03129 0.24 -1.5 416,724 + MPMX19_03129 0.24 +0.4 416,724 + MPMX19_03129 0.24 +0.3 416,725 - MPMX19_03129 0.24 -0.9 416,725 - MPMX19_03129 0.24 +1.1 416,725 - MPMX19_03129 0.24 +0.0 416,725 - MPMX19_03129 0.24 -0.6 416,725 - MPMX19_03129 0.24 +1.5 416,725 - MPMX19_03129 0.24 +0.1 416,725 - MPMX19_03129 0.24 +0.0 416,725 - MPMX19_03129 0.24 -0.7 416,725 - MPMX19_03129 0.24 -1.1 416,725 - MPMX19_03129 0.24 -1.5 416,725 - MPMX19_03129 0.24 +2.1 416,727 + MPMX19_03129 0.24 -1.0 416,727 + MPMX19_03129 0.24 -0.1 416,727 + MPMX19_03129 0.24 +0.4 416,728 - MPMX19_03129 0.24 -1.7 416,728 - MPMX19_03129 0.24 -0.0 416,728 - MPMX19_03129 0.24 +0.1 416,793 + MPMX19_03129 0.29 +0.1 416,793 + MPMX19_03129 0.29 -0.6 416,793 + MPMX19_03129 0.29 +0.7 417,030 + MPMX19_03129 0.46 +2.3 417,030 + MPMX19_03129 0.46 +0.9 417,279 + MPMX19_03129 0.65 -0.6 417,279 + MPMX19_03129 0.65 +0.1 417,279 + MPMX19_03129 0.65 +0.4 417,279 + MPMX19_03129 0.65 -0.1 417,279 + MPMX19_03129 0.65 -1.5 417,279 + MPMX19_03129 0.65 +0.3 417,280 - MPMX19_03129 0.65 +0.1 417,280 - MPMX19_03129 0.65 -1.6 417,280 - MPMX19_03129 0.65 +0.5 417,408 + MPMX19_03129 0.74 -0.4 417,408 + MPMX19_03129 0.74 -0.3 417,408 + MPMX19_03129 0.74 -2.0 417,409 - MPMX19_03129 0.74 +0.0 417,409 - MPMX19_03129 0.74 +0.4 417,409 - MPMX19_03129 0.74 +0.3 417,435 + MPMX19_03129 0.76 -1.1 417,435 + MPMX19_03129 0.76 +1.3 417,436 - MPMX19_03129 0.76 +0.4 417,582 + MPMX19_03129 0.87 +1.0 417,582 + MPMX19_03129 0.87 +0.9 417,583 - MPMX19_03129 0.87 +1.5 417,583 - MPMX19_03129 0.87 -0.2 417,583 - MPMX19_03129 0.87 -1.3 417,583 - MPMX19_03129 0.87 -0.5 417,583 - MPMX19_03129 0.87 -1.5 417,583 - MPMX19_03129 0.87 -0.2 417,903 + -0.6 417,903 + -0.9 417,914 - -0.8 418,119 + MPMX19_03130 0.18 -0.9 418,119 + MPMX19_03130 0.18 -0.2 418,119 + MPMX19_03130 0.18 -0.8 418,119 + MPMX19_03130 0.18 +0.1 418,119 + MPMX19_03130 0.18 -0.3 418,119 + MPMX19_03130 0.18 -1.9 418,119 + MPMX19_03130 0.18 -1.2 418,119 + MPMX19_03130 0.18 +0.7 418,119 + MPMX19_03130 0.18 +0.1 418,119 + MPMX19_03130 0.18 -0.9 418,119 + MPMX19_03130 0.18 -0.3 418,119 + MPMX19_03130 0.18 +1.1 418,119 + MPMX19_03130 0.18 -0.4 418,119 + MPMX19_03130 0.18 -0.3 418,119 + MPMX19_03130 0.18 -1.3 418,120 - MPMX19_03130 0.18 -0.4 418,120 - MPMX19_03130 0.18 -0.3 418,120 - MPMX19_03130 0.18 +0.5 418,120 - MPMX19_03130 0.18 -0.4 418,120 - MPMX19_03130 0.18 +0.3 418,120 - MPMX19_03130 0.18 -1.8 418,120 - MPMX19_03130 0.18 -1.9 418,120 - MPMX19_03130 0.18 +0.3 418,120 - MPMX19_03130 0.18 +0.1 418,120 - MPMX19_03130 0.18 -0.5 418,120 - MPMX19_03130 0.18 -0.6 418,120 - MPMX19_03130 0.18 -2.0 418,120 - MPMX19_03130 0.18 -1.4 418,326 + MPMX19_03130 0.33 -0.0 418,329 + MPMX19_03130 0.33 -0.3 418,329 + MPMX19_03130 0.33 -1.9 418,329 + MPMX19_03130 0.33 +1.1 418,329 + MPMX19_03130 0.33 -0.9 418,329 + MPMX19_03130 0.33 -0.0 418,330 - MPMX19_03130 0.33 +0.1 418,330 - MPMX19_03130 0.33 -0.7 418,330 - MPMX19_03130 0.33 +1.7 418,330 - MPMX19_03130 0.33 -0.0 418,330 - MPMX19_03130 0.33 -0.6 418,330 - MPMX19_03130 0.33 -0.5 418,576 - MPMX19_03130 0.50 -1.6 418,576 - MPMX19_03130 0.50 -0.5 418,576 - MPMX19_03130 0.50 -0.4 418,576 - MPMX19_03130 0.50 -0.9 418,576 - MPMX19_03130 0.50 +0.5 418,576 - MPMX19_03130 0.50 +0.4 418,576 - MPMX19_03130 0.50 -1.0 418,576 - MPMX19_03130 0.50 +0.1 418,576 - MPMX19_03130 0.50 +0.2
Or see this region's nucleotide sequence