Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03039 and MPMX19_03040 are separated by 116 nucleotides MPMX19_03040 and MPMX19_03041 overlap by 19 nucleotides MPMX19_03041 and MPMX19_03042 are separated by 109 nucleotides MPMX19_03042 and MPMX19_03043 are separated by 111 nucleotides
MPMX19_03039: MPMX19_03039 - Cyclic AMP receptor protein, at 306,654 to 307,373
_03039
MPMX19_03040: MPMX19_03040 - hypothetical protein, at 307,490 to 307,780
_03040
MPMX19_03041: MPMX19_03041 - hypothetical protein, at 307,762 to 308,253
_03041
MPMX19_03042: MPMX19_03042 - hypothetical protein, at 308,363 to 308,893
_03042
MPMX19_03043: MPMX19_03043 - putative oxidoreductase YghA, at 309,005 to 309,907
_03043
Position (kb) 308
309 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 307.371 kb on + strand at 307.372 kb on - strand at 307.372 kb on - strand at 307.385 kb on + strand at 307.385 kb on + strand at 307.385 kb on + strand at 307.386 kb on - strand at 307.386 kb on - strand at 307.450 kb on + strand at 307.524 kb on + strand, within MPMX19_03040 at 307.525 kb on - strand, within MPMX19_03040 at 307.656 kb on - strand, within MPMX19_03040 at 308.311 kb on + strand at 308.311 kb on + strand at 308.311 kb on + strand at 308.312 kb on - strand at 308.447 kb on + strand, within MPMX19_03042 at 308.448 kb on - strand, within MPMX19_03042 at 308.585 kb on + strand, within MPMX19_03042 at 308.585 kb on + strand, within MPMX19_03042 at 308.585 kb on + strand, within MPMX19_03042 at 308.585 kb on + strand, within MPMX19_03042 at 308.585 kb on + strand, within MPMX19_03042 at 308.586 kb on - strand, within MPMX19_03042 at 308.586 kb on - strand, within MPMX19_03042 at 308.586 kb on - strand, within MPMX19_03042 at 308.586 kb on - strand, within MPMX19_03042 at 308.586 kb on - strand, within MPMX19_03042 at 308.837 kb on + strand, within MPMX19_03042 at 308.837 kb on + strand, within MPMX19_03042 at 308.838 kb on - strand, within MPMX19_03042 at 308.838 kb on - strand, within MPMX19_03042 at 308.838 kb on - strand, within MPMX19_03042 at 309.053 kb on + strand at 309.054 kb on - strand at 309.143 kb on + strand, within MPMX19_03043 at 309.143 kb on + strand, within MPMX19_03043 at 309.143 kb on + strand, within MPMX19_03043 at 309.143 kb on + strand, within MPMX19_03043 at 309.143 kb on + strand, within MPMX19_03043 at 309.143 kb on + strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.144 kb on - strand, within MPMX19_03043 at 309.227 kb on + strand, within MPMX19_03043 at 309.227 kb on + strand, within MPMX19_03043 at 309.228 kb on - strand, within MPMX19_03043 at 309.228 kb on - strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.506 kb on + strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.507 kb on - strand, within MPMX19_03043 at 309.590 kb on + strand, within MPMX19_03043 at 309.590 kb on + strand, within MPMX19_03043 at 309.590 kb on + strand, within MPMX19_03043 at 309.590 kb on + strand, within MPMX19_03043 at 309.591 kb on - strand, within MPMX19_03043 at 309.591 kb on - strand, within MPMX19_03043 at 309.591 kb on - strand, within MPMX19_03043 at 309.591 kb on - strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.611 kb on + strand, within MPMX19_03043 at 309.612 kb on - strand, within MPMX19_03043 at 309.612 kb on - strand, within MPMX19_03043 at 309.612 kb on - strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.617 kb on + strand, within MPMX19_03043 at 309.618 kb on - strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.647 kb on + strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.648 kb on - strand, within MPMX19_03043 at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.827 kb on + strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.828 kb on - strand at 309.875 kb on + strand at 309.875 kb on + strand at 309.875 kb on + strand at 309.875 kb on + strand at 309.876 kb on - strand at 309.876 kb on - strand at 309.876 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 307,371 + +0.3 307,372 - -0.7 307,372 - +0.5 307,385 + -0.6 307,385 + +0.9 307,385 + +0.2 307,386 - -0.5 307,386 - -0.5 307,450 + -1.6 307,524 + MPMX19_03040 0.12 -1.4 307,525 - MPMX19_03040 0.12 -0.6 307,656 - MPMX19_03040 0.57 -1.3 308,311 + -2.5 308,311 + -0.5 308,311 + +0.2 308,312 - +0.6 308,447 + MPMX19_03042 0.16 -0.6 308,448 - MPMX19_03042 0.16 -1.3 308,585 + MPMX19_03042 0.42 -0.3 308,585 + MPMX19_03042 0.42 -0.3 308,585 + MPMX19_03042 0.42 -1.3 308,585 + MPMX19_03042 0.42 -2.1 308,585 + MPMX19_03042 0.42 -2.0 308,586 - MPMX19_03042 0.42 -0.1 308,586 - MPMX19_03042 0.42 -1.6 308,586 - MPMX19_03042 0.42 +1.0 308,586 - MPMX19_03042 0.42 -1.2 308,586 - MPMX19_03042 0.42 -0.1 308,837 + MPMX19_03042 0.89 -1.1 308,837 + MPMX19_03042 0.89 -1.1 308,838 - MPMX19_03042 0.89 +0.2 308,838 - MPMX19_03042 0.89 -0.4 308,838 - MPMX19_03042 0.89 -2.3 309,053 + +0.0 309,054 - -0.3 309,143 + MPMX19_03043 0.15 -0.8 309,143 + MPMX19_03043 0.15 -0.7 309,143 + MPMX19_03043 0.15 +0.6 309,143 + MPMX19_03043 0.15 +0.7 309,143 + MPMX19_03043 0.15 -0.9 309,143 + MPMX19_03043 0.15 +0.8 309,144 - MPMX19_03043 0.15 +0.5 309,144 - MPMX19_03043 0.15 -0.1 309,144 - MPMX19_03043 0.15 -1.6 309,144 - MPMX19_03043 0.15 -0.0 309,144 - MPMX19_03043 0.15 -0.8 309,144 - MPMX19_03043 0.15 +0.2 309,144 - MPMX19_03043 0.15 +0.7 309,144 - MPMX19_03043 0.15 -0.7 309,144 - MPMX19_03043 0.15 -1.3 309,144 - MPMX19_03043 0.15 -0.9 309,227 + MPMX19_03043 0.25 +1.0 309,227 + MPMX19_03043 0.25 -1.6 309,228 - MPMX19_03043 0.25 -0.1 309,228 - MPMX19_03043 0.25 +0.4 309,506 + MPMX19_03043 0.55 -0.0 309,506 + MPMX19_03043 0.55 -2.2 309,506 + MPMX19_03043 0.55 -0.4 309,506 + MPMX19_03043 0.55 +0.6 309,506 + MPMX19_03043 0.55 -0.2 309,506 + MPMX19_03043 0.55 -0.7 309,506 + MPMX19_03043 0.55 +1.2 309,506 + MPMX19_03043 0.55 +0.0 309,506 + MPMX19_03043 0.55 +0.1 309,506 + MPMX19_03043 0.55 +0.5 309,507 - MPMX19_03043 0.56 -0.9 309,507 - MPMX19_03043 0.56 -1.3 309,507 - MPMX19_03043 0.56 +0.8 309,507 - MPMX19_03043 0.56 -2.0 309,507 - MPMX19_03043 0.56 -0.3 309,507 - MPMX19_03043 0.56 -3.0 309,507 - MPMX19_03043 0.56 +0.6 309,507 - MPMX19_03043 0.56 +0.3 309,507 - MPMX19_03043 0.56 -1.5 309,507 - MPMX19_03043 0.56 +0.1 309,507 - MPMX19_03043 0.56 +0.3 309,507 - MPMX19_03043 0.56 -1.5 309,590 + MPMX19_03043 0.65 -1.9 309,590 + MPMX19_03043 0.65 +0.7 309,590 + MPMX19_03043 0.65 -1.4 309,590 + MPMX19_03043 0.65 +0.1 309,591 - MPMX19_03043 0.65 -1.6 309,591 - MPMX19_03043 0.65 +0.2 309,591 - MPMX19_03043 0.65 -0.6 309,591 - MPMX19_03043 0.65 -0.8 309,611 + MPMX19_03043 0.67 -0.8 309,611 + MPMX19_03043 0.67 -0.8 309,611 + MPMX19_03043 0.67 -0.4 309,611 + MPMX19_03043 0.67 -0.6 309,611 + MPMX19_03043 0.67 -0.3 309,611 + MPMX19_03043 0.67 -1.6 309,611 + MPMX19_03043 0.67 -0.6 309,611 + MPMX19_03043 0.67 +0.5 309,611 + MPMX19_03043 0.67 +0.1 309,612 - MPMX19_03043 0.67 -1.4 309,612 - MPMX19_03043 0.67 -0.6 309,612 - MPMX19_03043 0.67 +0.7 309,617 + MPMX19_03043 0.68 +0.5 309,617 + MPMX19_03043 0.68 -1.7 309,617 + MPMX19_03043 0.68 -0.2 309,617 + MPMX19_03043 0.68 -1.3 309,617 + MPMX19_03043 0.68 -1.4 309,617 + MPMX19_03043 0.68 -0.3 309,618 - MPMX19_03043 0.68 -3.0 309,647 + MPMX19_03043 0.71 +0.5 309,647 + MPMX19_03043 0.71 -1.3 309,647 + MPMX19_03043 0.71 +0.8 309,647 + MPMX19_03043 0.71 +1.4 309,647 + MPMX19_03043 0.71 -0.1 309,647 + MPMX19_03043 0.71 -0.6 309,648 - MPMX19_03043 0.71 -1.4 309,648 - MPMX19_03043 0.71 -1.0 309,648 - MPMX19_03043 0.71 +0.7 309,648 - MPMX19_03043 0.71 -0.4 309,648 - MPMX19_03043 0.71 +0.0 309,648 - MPMX19_03043 0.71 +0.4 309,648 - MPMX19_03043 0.71 +0.4 309,648 - MPMX19_03043 0.71 -0.4 309,648 - MPMX19_03043 0.71 -0.8 309,648 - MPMX19_03043 0.71 +0.5 309,827 + +2.0 309,827 + +0.3 309,827 + -1.8 309,827 + +1.0 309,827 + -0.0 309,827 + +0.0 309,827 + -0.8 309,827 + -0.6 309,827 + -0.3 309,827 + +1.5 309,827 + +0.5 309,827 + -1.5 309,827 + +0.6 309,827 + -2.2 309,827 + -0.3 309,828 - -1.2 309,828 - +0.7 309,828 - -1.6 309,828 - +0.0 309,828 - -0.6 309,828 - +0.1 309,828 - -0.3 309,828 - +0.5 309,828 - -0.8 309,828 - -0.8 309,828 - +1.7 309,828 - +0.4 309,828 - -2.3 309,828 - -1.6 309,828 - -3.8 309,828 - +0.1 309,828 - -1.6 309,828 - -1.8 309,828 - -0.5 309,828 - -0.8 309,828 - -2.0 309,875 + -0.6 309,875 + -0.3 309,875 + -0.8 309,875 + +0.2 309,876 - -1.3 309,876 - -0.3 309,876 - +0.4
Or see this region's nucleotide sequence