Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03011 and MPMX19_03012 overlap by 61 nucleotides MPMX19_03012 and MPMX19_03013 are separated by 107 nucleotides MPMX19_03013 and MPMX19_03014 are separated by 150 nucleotides
MPMX19_03011: MPMX19_03011 - hypothetical protein, at 274,559 to 275,140
_03011
MPMX19_03012: MPMX19_03012 - hypothetical protein, at 275,080 to 275,538
_03012
MPMX19_03013: MPMX19_03013 - Aldehyde-alcohol dehydrogenase, at 275,646 to 278,312
_03013
MPMX19_03014: MPMX19_03014 - Transcriptional activatory protein AadR, at 278,463 to 279,227
_03014
Position (kb) 275
276
277
278
279 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 274.668 kb on + strand, within MPMX19_03011 at 274.669 kb on - strand, within MPMX19_03011 at 274.848 kb on + strand, within MPMX19_03011 at 274.848 kb on + strand, within MPMX19_03011 at 274.848 kb on + strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.924 kb on - strand, within MPMX19_03011 at 274.924 kb on - strand, within MPMX19_03011 at 274.924 kb on - strand, within MPMX19_03011 at 274.971 kb on + strand, within MPMX19_03011 at 275.505 kb on + strand at 275.506 kb on - strand at 275.506 kb on - strand at 275.506 kb on - strand at 275.506 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.729 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.774 kb on - strand at 276.013 kb on + strand, within MPMX19_03013 at 276.302 kb on - strand, within MPMX19_03013 at 278.294 kb on + strand at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.887 kb on + strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.888 kb on - strand, within MPMX19_03014 at 278.894 kb on - strand, within MPMX19_03014 at 278.894 kb on - strand, within MPMX19_03014 at 278.977 kb on + strand, within MPMX19_03014 at 278.977 kb on + strand, within MPMX19_03014 at 278.977 kb on + strand, within MPMX19_03014 at 278.978 kb on - strand, within MPMX19_03014 at 278.978 kb on - strand, within MPMX19_03014 at 278.978 kb on - strand, within MPMX19_03014 at 279.058 kb on + strand, within MPMX19_03014 at 279.059 kb on - strand, within MPMX19_03014 at 279.059 kb on - strand, within MPMX19_03014 at 279.059 kb on - strand, within MPMX19_03014 at 279.176 kb on - strand at 279.294 kb on + strand at 279.294 kb on + strand at 279.294 kb on + strand at 279.295 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 274,668 + MPMX19_03011 0.19 +0.1 274,669 - MPMX19_03011 0.19 +1.2 274,848 + MPMX19_03011 0.50 +0.0 274,848 + MPMX19_03011 0.50 -1.3 274,848 + MPMX19_03011 0.50 -1.4 274,849 - MPMX19_03011 0.50 +1.5 274,849 - MPMX19_03011 0.50 -0.8 274,849 - MPMX19_03011 0.50 -0.2 274,849 - MPMX19_03011 0.50 +0.7 274,924 - MPMX19_03011 0.63 -2.1 274,924 - MPMX19_03011 0.63 +0.7 274,924 - MPMX19_03011 0.63 -0.4 274,971 + MPMX19_03011 0.71 +0.0 275,505 + -0.4 275,506 - -0.0 275,506 - -0.1 275,506 - +0.9 275,506 - -0.1 275,717 - +1.0 275,717 - -1.1 275,717 - -0.9 275,717 - +0.4 275,717 - -0.2 275,717 - -0.7 275,729 - -0.7 275,732 - +0.3 275,732 - -0.6 275,732 - +0.2 275,732 - +0.2 275,732 - -2.1 275,732 - -2.0 275,732 - -1.0 275,774 - +0.6 276,013 + MPMX19_03013 0.14 -0.7 276,302 - MPMX19_03013 0.25 -0.2 278,294 + +0.7 278,887 + MPMX19_03014 0.55 +1.1 278,887 + MPMX19_03014 0.55 -0.1 278,887 + MPMX19_03014 0.55 +0.6 278,887 + MPMX19_03014 0.55 +0.3 278,887 + MPMX19_03014 0.55 +0.0 278,887 + MPMX19_03014 0.55 +0.6 278,887 + MPMX19_03014 0.55 -1.1 278,887 + MPMX19_03014 0.55 -1.4 278,888 - MPMX19_03014 0.56 -1.6 278,888 - MPMX19_03014 0.56 +0.6 278,888 - MPMX19_03014 0.56 +0.9 278,888 - MPMX19_03014 0.56 +0.3 278,888 - MPMX19_03014 0.56 -0.3 278,888 - MPMX19_03014 0.56 +0.7 278,894 - MPMX19_03014 0.56 -0.8 278,894 - MPMX19_03014 0.56 -0.5 278,977 + MPMX19_03014 0.67 +0.0 278,977 + MPMX19_03014 0.67 -3.2 278,977 + MPMX19_03014 0.67 +1.7 278,978 - MPMX19_03014 0.67 -2.2 278,978 - MPMX19_03014 0.67 -0.6 278,978 - MPMX19_03014 0.67 +0.7 279,058 + MPMX19_03014 0.78 -0.7 279,059 - MPMX19_03014 0.78 +0.6 279,059 - MPMX19_03014 0.78 -0.8 279,059 - MPMX19_03014 0.78 -0.7 279,176 - -0.7 279,294 + -0.1 279,294 + -0.6 279,294 + +1.2 279,295 - -1.4
Or see this region's nucleotide sequence