Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02994 and MPMX19_02995 are separated by 33 nucleotides MPMX19_02995 and MPMX19_02996 are separated by 73 nucleotides MPMX19_02996 and MPMX19_02997 are separated by 34 nucleotides
MPMX19_02994: MPMX19_02994 - hypothetical protein, at 256,111 to 257,271
_02994
MPMX19_02995: MPMX19_02995 - hypothetical protein, at 257,305 to 258,171
_02995
MPMX19_02996: MPMX19_02996 - HTH-type transcriptional repressor NicS, at 258,245 to 258,928
_02996
MPMX19_02997: MPMX19_02997 - Multidrug export protein EmrB, at 258,963 to 260,543
_02997
Position (kb) 258
259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 257.255 kb on + strand at 257.255 kb on + strand at 257.255 kb on + strand at 257.255 kb on + strand at 257.255 kb on + strand at 257.256 kb on - strand at 257.256 kb on - strand at 257.256 kb on - strand at 257.256 kb on - strand at 257.256 kb on - strand at 257.507 kb on - strand, within MPMX19_02995 at 257.641 kb on + strand, within MPMX19_02995 at 257.641 kb on + strand, within MPMX19_02995 at 257.725 kb on + strand, within MPMX19_02995 at 257.725 kb on + strand, within MPMX19_02995 at 257.725 kb on + strand, within MPMX19_02995 at 257.725 kb on + strand, within MPMX19_02995 at 257.726 kb on - strand, within MPMX19_02995 at 257.726 kb on - strand, within MPMX19_02995 at 257.776 kb on + strand, within MPMX19_02995 at 257.776 kb on + strand, within MPMX19_02995 at 257.776 kb on + strand, within MPMX19_02995 at 257.776 kb on + strand, within MPMX19_02995 at 257.776 kb on + strand, within MPMX19_02995 at 257.776 kb on + strand, within MPMX19_02995 at 257.776 kb on + strand, within MPMX19_02995 at 257.776 kb on + strand, within MPMX19_02995 at 257.776 kb on + strand, within MPMX19_02995 at 257.776 kb on + strand, within MPMX19_02995 at 257.776 kb on + strand, within MPMX19_02995 at 257.776 kb on + strand, within MPMX19_02995 at 257.776 kb on + strand, within MPMX19_02995 at 257.776 kb on + strand, within MPMX19_02995 at 257.776 kb on + strand, within MPMX19_02995 at 257.777 kb on - strand, within MPMX19_02995 at 257.777 kb on - strand, within MPMX19_02995 at 257.777 kb on - strand, within MPMX19_02995 at 257.777 kb on - strand, within MPMX19_02995 at 257.777 kb on - strand, within MPMX19_02995 at 257.777 kb on - strand, within MPMX19_02995 at 257.777 kb on - strand, within MPMX19_02995 at 257.777 kb on - strand, within MPMX19_02995 at 257.777 kb on - strand, within MPMX19_02995 at 257.777 kb on - strand, within MPMX19_02995 at 257.881 kb on + strand, within MPMX19_02995 at 257.881 kb on + strand, within MPMX19_02995 at 257.881 kb on + strand, within MPMX19_02995 at 257.881 kb on + strand, within MPMX19_02995 at 257.881 kb on + strand, within MPMX19_02995 at 257.882 kb on - strand, within MPMX19_02995 at 257.882 kb on - strand, within MPMX19_02995 at 257.882 kb on - strand, within MPMX19_02995 at 257.882 kb on - strand, within MPMX19_02995 at 257.882 kb on - strand, within MPMX19_02995 at 257.882 kb on - strand, within MPMX19_02995 at 257.882 kb on - strand, within MPMX19_02995 at 257.882 kb on - strand, within MPMX19_02995 at 257.882 kb on - strand, within MPMX19_02995 at 257.882 kb on - strand, within MPMX19_02995 at 257.882 kb on - strand, within MPMX19_02995 at 257.882 kb on - strand, within MPMX19_02995 at 258.191 kb on + strand at 258.191 kb on + strand at 258.191 kb on + strand at 258.191 kb on + strand at 258.191 kb on + strand at 258.191 kb on + strand at 258.191 kb on + strand at 258.191 kb on + strand at 258.191 kb on + strand at 258.191 kb on + strand at 258.191 kb on + strand at 258.191 kb on + strand at 258.192 kb on - strand at 258.192 kb on - strand at 258.192 kb on - strand at 258.192 kb on - strand at 258.192 kb on - strand at 258.192 kb on - strand at 258.192 kb on - strand at 258.192 kb on - strand at 258.192 kb on - strand at 258.192 kb on - strand at 258.446 kb on + strand, within MPMX19_02996 at 258.446 kb on + strand, within MPMX19_02996 at 258.446 kb on + strand, within MPMX19_02996 at 258.446 kb on + strand, within MPMX19_02996 at 258.446 kb on + strand, within MPMX19_02996 at 258.446 kb on + strand, within MPMX19_02996 at 258.447 kb on - strand, within MPMX19_02996 at 258.447 kb on - strand, within MPMX19_02996 at 258.447 kb on - strand, within MPMX19_02996 at 258.447 kb on - strand, within MPMX19_02996 at 258.447 kb on - strand, within MPMX19_02996 at 258.447 kb on - strand, within MPMX19_02996 at 258.447 kb on - strand, within MPMX19_02996 at 258.447 kb on - strand, within MPMX19_02996 at 258.447 kb on - strand, within MPMX19_02996 at 258.447 kb on - strand, within MPMX19_02996 at 258.449 kb on + strand, within MPMX19_02996 at 258.449 kb on + strand, within MPMX19_02996 at 258.449 kb on + strand, within MPMX19_02996 at 258.449 kb on + strand, within MPMX19_02996 at 258.449 kb on + strand, within MPMX19_02996 at 258.450 kb on - strand, within MPMX19_02996 at 258.450 kb on - strand, within MPMX19_02996 at 258.450 kb on - strand, within MPMX19_02996 at 258.450 kb on - strand, within MPMX19_02996 at 258.450 kb on - strand, within MPMX19_02996 at 258.450 kb on - strand, within MPMX19_02996 at 258.450 kb on - strand, within MPMX19_02996 at 258.476 kb on + strand, within MPMX19_02996 at 258.476 kb on + strand, within MPMX19_02996 at 258.476 kb on + strand, within MPMX19_02996 at 258.476 kb on + strand, within MPMX19_02996 at 258.476 kb on + strand, within MPMX19_02996 at 258.476 kb on + strand, within MPMX19_02996 at 258.477 kb on - strand, within MPMX19_02996 at 258.477 kb on - strand, within MPMX19_02996 at 258.477 kb on - strand, within MPMX19_02996 at 258.477 kb on - strand, within MPMX19_02996 at 258.500 kb on + strand, within MPMX19_02996 at 258.500 kb on + strand, within MPMX19_02996 at 258.500 kb on + strand, within MPMX19_02996 at 258.500 kb on + strand, within MPMX19_02996 at 258.500 kb on + strand, within MPMX19_02996 at 258.500 kb on + strand, within MPMX19_02996 at 258.501 kb on - strand, within MPMX19_02996 at 258.501 kb on - strand, within MPMX19_02996 at 258.501 kb on - strand, within MPMX19_02996 at 258.501 kb on - strand, within MPMX19_02996 at 258.501 kb on - strand, within MPMX19_02996 at 258.501 kb on - strand, within MPMX19_02996 at 258.501 kb on - strand, within MPMX19_02996 at 258.501 kb on - strand, within MPMX19_02996 at 258.501 kb on - strand, within MPMX19_02996 at 258.501 kb on - strand, within MPMX19_02996 at 258.501 kb on - strand, within MPMX19_02996 at 258.501 kb on - strand, within MPMX19_02996 at 258.593 kb on + strand, within MPMX19_02996 at 258.593 kb on + strand, within MPMX19_02996 at 258.594 kb on - strand, within MPMX19_02996 at 258.779 kb on + strand, within MPMX19_02996 at 258.779 kb on + strand, within MPMX19_02996 at 258.780 kb on - strand, within MPMX19_02996 at 258.780 kb on - strand, within MPMX19_02996 at 258.780 kb on - strand, within MPMX19_02996 at 258.803 kb on + strand, within MPMX19_02996 at 258.803 kb on + strand, within MPMX19_02996 at 258.803 kb on + strand, within MPMX19_02996 at 258.804 kb on - strand, within MPMX19_02996 at 258.809 kb on + strand, within MPMX19_02996 at 258.809 kb on + strand, within MPMX19_02996 at 258.809 kb on + strand, within MPMX19_02996 at 258.810 kb on - strand, within MPMX19_02996 at 258.810 kb on - strand, within MPMX19_02996 at 258.810 kb on - strand, within MPMX19_02996 at 258.810 kb on - strand, within MPMX19_02996 at 258.892 kb on + strand at 258.892 kb on + strand at 258.892 kb on + strand at 258.892 kb on + strand at 258.892 kb on + strand at 258.892 kb on + strand at 258.892 kb on + strand at 258.893 kb on - strand at 258.893 kb on - strand at 258.893 kb on - strand at 258.893 kb on - strand at 258.893 kb on - strand at 258.893 kb on - strand at 258.893 kb on - strand at 258.893 kb on - strand at 258.893 kb on - strand at 258.965 kb on - strand at 259.048 kb on + strand at 259.048 kb on + strand at 259.048 kb on + strand at 259.048 kb on + strand at 259.048 kb on + strand at 259.048 kb on + strand at 259.048 kb on + strand at 259.048 kb on + strand at 259.048 kb on + strand at 259.048 kb on + strand at 259.049 kb on - strand at 259.049 kb on - strand at 259.049 kb on - strand at 259.049 kb on - strand at 259.049 kb on - strand at 259.049 kb on - strand at 259.060 kb on + strand at 259.060 kb on + strand at 259.060 kb on + strand at 259.060 kb on + strand at 259.060 kb on + strand at 259.060 kb on + strand at 259.060 kb on + strand at 259.060 kb on + strand at 259.060 kb on + strand at 259.060 kb on + strand at 259.061 kb on - strand at 259.061 kb on - strand at 259.061 kb on - strand at 259.061 kb on - strand at 259.061 kb on - strand at 259.061 kb on - strand at 259.061 kb on - strand at 259.061 kb on - strand at 259.351 kb on + strand, within MPMX19_02997 at 259.351 kb on + strand, within MPMX19_02997 at 259.351 kb on + strand, within MPMX19_02997 at 259.351 kb on + strand, within MPMX19_02997 at 259.351 kb on + strand, within MPMX19_02997 at 259.351 kb on + strand, within MPMX19_02997 at 259.351 kb on + strand, within MPMX19_02997 at 259.352 kb on - strand, within MPMX19_02997 at 259.352 kb on - strand, within MPMX19_02997 at 259.352 kb on - strand, within MPMX19_02997 at 259.352 kb on - strand, within MPMX19_02997 at 259.352 kb on - strand, within MPMX19_02997 at 259.597 kb on + strand, within MPMX19_02997 at 259.633 kb on + strand, within MPMX19_02997 at 259.634 kb on - strand, within MPMX19_02997 at 259.634 kb on - strand, within MPMX19_02997 at 259.849 kb on + strand, within MPMX19_02997 at 259.850 kb on - strand, within MPMX19_02997 at 259.876 kb on + strand, within MPMX19_02997 at 259.877 kb on - strand, within MPMX19_02997 at 259.877 kb on - strand, within MPMX19_02997
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 257,255 + +2.1 257,255 + -1.1 257,255 + +1.7 257,255 + +0.6 257,255 + +0.7 257,256 - +1.1 257,256 - +0.2 257,256 - -0.1 257,256 - -0.8 257,256 - +0.2 257,507 - MPMX19_02995 0.23 -0.9 257,641 + MPMX19_02995 0.39 +0.2 257,641 + MPMX19_02995 0.39 +1.7 257,725 + MPMX19_02995 0.48 -0.1 257,725 + MPMX19_02995 0.48 +0.2 257,725 + MPMX19_02995 0.48 +1.3 257,725 + MPMX19_02995 0.48 -0.7 257,726 - MPMX19_02995 0.49 -0.3 257,726 - MPMX19_02995 0.49 -0.3 257,776 + MPMX19_02995 0.54 +0.4 257,776 + MPMX19_02995 0.54 -0.6 257,776 + MPMX19_02995 0.54 -0.6 257,776 + MPMX19_02995 0.54 -0.5 257,776 + MPMX19_02995 0.54 -0.3 257,776 + MPMX19_02995 0.54 -1.4 257,776 + MPMX19_02995 0.54 +0.0 257,776 + MPMX19_02995 0.54 -1.3 257,776 + MPMX19_02995 0.54 -1.3 257,776 + MPMX19_02995 0.54 -0.8 257,776 + MPMX19_02995 0.54 -1.3 257,776 + MPMX19_02995 0.54 +0.3 257,776 + MPMX19_02995 0.54 +0.2 257,776 + MPMX19_02995 0.54 -0.6 257,776 + MPMX19_02995 0.54 -0.6 257,777 - MPMX19_02995 0.54 +1.4 257,777 - MPMX19_02995 0.54 -0.6 257,777 - MPMX19_02995 0.54 -0.3 257,777 - MPMX19_02995 0.54 -0.1 257,777 - MPMX19_02995 0.54 +0.9 257,777 - MPMX19_02995 0.54 +0.3 257,777 - MPMX19_02995 0.54 +0.4 257,777 - MPMX19_02995 0.54 -0.6 257,777 - MPMX19_02995 0.54 -0.8 257,777 - MPMX19_02995 0.54 -0.8 257,881 + MPMX19_02995 0.66 +0.6 257,881 + MPMX19_02995 0.66 -0.6 257,881 + MPMX19_02995 0.66 +0.1 257,881 + MPMX19_02995 0.66 -0.1 257,881 + MPMX19_02995 0.66 +1.4 257,882 - MPMX19_02995 0.67 +2.2 257,882 - MPMX19_02995 0.67 -1.3 257,882 - MPMX19_02995 0.67 -0.2 257,882 - MPMX19_02995 0.67 -1.0 257,882 - MPMX19_02995 0.67 +0.7 257,882 - MPMX19_02995 0.67 -0.7 257,882 - MPMX19_02995 0.67 -2.2 257,882 - MPMX19_02995 0.67 -0.5 257,882 - MPMX19_02995 0.67 +0.1 257,882 - MPMX19_02995 0.67 -0.4 257,882 - MPMX19_02995 0.67 -0.6 257,882 - MPMX19_02995 0.67 +1.1 258,191 + -0.3 258,191 + +0.1 258,191 + -0.8 258,191 + +0.4 258,191 + +0.9 258,191 + -1.6 258,191 + -0.8 258,191 + -0.9 258,191 + +1.3 258,191 + +0.2 258,191 + -1.7 258,191 + -1.8 258,192 - -0.3 258,192 - -0.5 258,192 - -2.3 258,192 - -0.3 258,192 - -1.5 258,192 - +0.7 258,192 - +0.2 258,192 - -0.4 258,192 - -0.1 258,192 - -0.8 258,446 + MPMX19_02996 0.29 -1.7 258,446 + MPMX19_02996 0.29 -0.4 258,446 + MPMX19_02996 0.29 +0.5 258,446 + MPMX19_02996 0.29 -0.7 258,446 + MPMX19_02996 0.29 -0.4 258,446 + MPMX19_02996 0.29 -0.7 258,447 - MPMX19_02996 0.30 -1.3 258,447 - MPMX19_02996 0.30 +0.3 258,447 - MPMX19_02996 0.30 -0.3 258,447 - MPMX19_02996 0.30 -1.3 258,447 - MPMX19_02996 0.30 -0.7 258,447 - MPMX19_02996 0.30 -0.6 258,447 - MPMX19_02996 0.30 +0.4 258,447 - MPMX19_02996 0.30 +1.2 258,447 - MPMX19_02996 0.30 -1.8 258,447 - MPMX19_02996 0.30 -2.0 258,449 + MPMX19_02996 0.30 -1.1 258,449 + MPMX19_02996 0.30 +0.2 258,449 + MPMX19_02996 0.30 -0.3 258,449 + MPMX19_02996 0.30 -0.8 258,449 + MPMX19_02996 0.30 +0.7 258,450 - MPMX19_02996 0.30 -0.8 258,450 - MPMX19_02996 0.30 -0.3 258,450 - MPMX19_02996 0.30 +0.3 258,450 - MPMX19_02996 0.30 -1.1 258,450 - MPMX19_02996 0.30 -1.4 258,450 - MPMX19_02996 0.30 -0.3 258,450 - MPMX19_02996 0.30 -2.1 258,476 + MPMX19_02996 0.34 -1.1 258,476 + MPMX19_02996 0.34 -0.6 258,476 + MPMX19_02996 0.34 +0.3 258,476 + MPMX19_02996 0.34 -0.6 258,476 + MPMX19_02996 0.34 -0.5 258,476 + MPMX19_02996 0.34 -1.0 258,477 - MPMX19_02996 0.34 -0.2 258,477 - MPMX19_02996 0.34 -0.3 258,477 - MPMX19_02996 0.34 -1.1 258,477 - MPMX19_02996 0.34 +0.2 258,500 + MPMX19_02996 0.37 -0.6 258,500 + MPMX19_02996 0.37 +0.9 258,500 + MPMX19_02996 0.37 -0.7 258,500 + MPMX19_02996 0.37 +0.2 258,500 + MPMX19_02996 0.37 +0.0 258,500 + MPMX19_02996 0.37 -0.9 258,501 - MPMX19_02996 0.37 -0.4 258,501 - MPMX19_02996 0.37 -0.1 258,501 - MPMX19_02996 0.37 -0.8 258,501 - MPMX19_02996 0.37 -1.3 258,501 - MPMX19_02996 0.37 -1.1 258,501 - MPMX19_02996 0.37 -0.6 258,501 - MPMX19_02996 0.37 +0.4 258,501 - MPMX19_02996 0.37 -0.7 258,501 - MPMX19_02996 0.37 +0.2 258,501 - MPMX19_02996 0.37 +0.4 258,501 - MPMX19_02996 0.37 -0.1 258,501 - MPMX19_02996 0.37 -0.7 258,593 + MPMX19_02996 0.51 +1.2 258,593 + MPMX19_02996 0.51 -1.9 258,594 - MPMX19_02996 0.51 -0.7 258,779 + MPMX19_02996 0.78 -1.7 258,779 + MPMX19_02996 0.78 -0.5 258,780 - MPMX19_02996 0.78 +0.6 258,780 - MPMX19_02996 0.78 +0.9 258,780 - MPMX19_02996 0.78 +0.5 258,803 + MPMX19_02996 0.82 +0.3 258,803 + MPMX19_02996 0.82 +0.1 258,803 + MPMX19_02996 0.82 -0.8 258,804 - MPMX19_02996 0.82 -1.3 258,809 + MPMX19_02996 0.82 -0.3 258,809 + MPMX19_02996 0.82 -0.8 258,809 + MPMX19_02996 0.82 -0.3 258,810 - MPMX19_02996 0.83 +0.7 258,810 - MPMX19_02996 0.83 -1.5 258,810 - MPMX19_02996 0.83 -0.6 258,810 - MPMX19_02996 0.83 -1.4 258,892 + -0.5 258,892 + -0.1 258,892 + -0.3 258,892 + -0.5 258,892 + -0.6 258,892 + +0.5 258,892 + +0.2 258,893 - +0.0 258,893 - -0.7 258,893 - -1.1 258,893 - -0.6 258,893 - -0.8 258,893 - +0.7 258,893 - +0.4 258,893 - -0.6 258,893 - -0.5 258,965 - -0.1 259,048 + -0.4 259,048 + +0.4 259,048 + -0.8 259,048 + -0.0 259,048 + -1.6 259,048 + -0.1 259,048 + -2.0 259,048 + +0.7 259,048 + -0.4 259,048 + -2.2 259,049 - +0.7 259,049 - -0.6 259,049 - -1.4 259,049 - -1.0 259,049 - -2.0 259,049 - -1.6 259,060 + +0.4 259,060 + -0.4 259,060 + -1.7 259,060 + -0.6 259,060 + +0.2 259,060 + -0.8 259,060 + +0.4 259,060 + -0.7 259,060 + -0.6 259,060 + +0.4 259,061 - +0.2 259,061 - +0.2 259,061 - -0.5 259,061 - -1.0 259,061 - -0.8 259,061 - -2.2 259,061 - -1.0 259,061 - -1.0 259,351 + MPMX19_02997 0.25 -0.8 259,351 + MPMX19_02997 0.25 +0.7 259,351 + MPMX19_02997 0.25 -1.7 259,351 + MPMX19_02997 0.25 -0.1 259,351 + MPMX19_02997 0.25 -0.5 259,351 + MPMX19_02997 0.25 -0.8 259,351 + MPMX19_02997 0.25 -1.2 259,352 - MPMX19_02997 0.25 +0.9 259,352 - MPMX19_02997 0.25 +0.7 259,352 - MPMX19_02997 0.25 -0.4 259,352 - MPMX19_02997 0.25 +0.0 259,352 - MPMX19_02997 0.25 -1.0 259,597 + MPMX19_02997 0.40 +0.2 259,633 + MPMX19_02997 0.42 -0.3 259,634 - MPMX19_02997 0.42 -0.1 259,634 - MPMX19_02997 0.42 +0.2 259,849 + MPMX19_02997 0.56 +0.2 259,850 - MPMX19_02997 0.56 -1.1 259,876 + MPMX19_02997 0.58 +0.7 259,877 - MPMX19_02997 0.58 -0.0 259,877 - MPMX19_02997 0.58 +0.8
Or see this region's nucleotide sequence