Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02888 and MPMX19_02889 are separated by 90 nucleotides MPMX19_02889 and MPMX19_02890 are separated by 47 nucleotides
MPMX19_02888: MPMX19_02888 - 6-phosphogluconolactonase, at 139,494 to 140,594
_02888
MPMX19_02889: MPMX19_02889 - Galactarate dehydratase (L-threo-forming), at 140,685 to 142,208
_02889
MPMX19_02890: MPMX19_02890 - Glucarate dehydratase, at 142,256 to 143,593
_02890
Position (kb) 140
141
142
143 Strain fitness (log2 ratio) -2
-1
0
1
2 at 139.762 kb on + strand, within MPMX19_02888 at 139.762 kb on + strand, within MPMX19_02888 at 139.762 kb on + strand, within MPMX19_02888 at 139.762 kb on + strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.879 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.922 kb on - strand, within MPMX19_02888 at 139.922 kb on - strand, within MPMX19_02888 at 139.922 kb on - strand, within MPMX19_02888 at 139.922 kb on - strand, within MPMX19_02888 at 139.922 kb on - strand, within MPMX19_02888 at 140.198 kb on - strand, within MPMX19_02888 at 140.198 kb on - strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.326 kb on + strand, within MPMX19_02888 at 140.327 kb on - strand, within MPMX19_02888 at 140.327 kb on - strand, within MPMX19_02888 at 140.350 kb on + strand, within MPMX19_02888 at 140.350 kb on + strand, within MPMX19_02888 at 140.503 kb on + strand at 140.503 kb on + strand at 140.503 kb on + strand at 140.503 kb on + strand at 140.503 kb on + strand at 140.503 kb on + strand at 140.503 kb on + strand at 140.503 kb on + strand at 140.503 kb on + strand at 140.503 kb on + strand at 140.503 kb on + strand at 140.503 kb on + strand at 140.503 kb on + strand at 140.504 kb on - strand at 140.504 kb on - strand at 140.504 kb on - strand at 140.504 kb on - strand at 140.504 kb on - strand at 140.504 kb on - strand at 140.504 kb on - strand at 140.504 kb on - strand at 140.504 kb on - strand at 140.504 kb on - strand at 140.597 kb on + strand at 140.597 kb on + strand at 140.598 kb on - strand at 140.598 kb on - strand at 140.598 kb on - strand at 140.668 kb on + strand at 140.668 kb on + strand at 140.669 kb on - strand at 140.669 kb on - strand at 140.669 kb on - strand at 140.669 kb on - strand at 140.669 kb on - strand at 140.669 kb on - strand at 140.926 kb on + strand, within MPMX19_02889 at 141.022 kb on + strand, within MPMX19_02889 at 141.022 kb on + strand, within MPMX19_02889 at 141.023 kb on - strand, within MPMX19_02889 at 141.023 kb on - strand, within MPMX19_02889 at 141.023 kb on - strand, within MPMX19_02889 at 141.023 kb on - strand, within MPMX19_02889 at 141.193 kb on + strand, within MPMX19_02889 at 141.193 kb on + strand, within MPMX19_02889 at 141.194 kb on - strand, within MPMX19_02889 at 141.194 kb on - strand, within MPMX19_02889 at 141.194 kb on - strand, within MPMX19_02889 at 141.194 kb on - strand, within MPMX19_02889 at 141.202 kb on + strand, within MPMX19_02889 at 141.203 kb on - strand, within MPMX19_02889 at 141.343 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.703 kb on + strand, within MPMX19_02889 at 141.704 kb on - strand, within MPMX19_02889 at 141.704 kb on - strand, within MPMX19_02889 at 141.704 kb on - strand, within MPMX19_02889 at 141.704 kb on - strand, within MPMX19_02889 at 141.704 kb on - strand, within MPMX19_02889 at 141.742 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.878 kb on + strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.879 kb on - strand, within MPMX19_02889 at 141.880 kb on + strand, within MPMX19_02889 at 141.880 kb on + strand, within MPMX19_02889 at 141.880 kb on + strand, within MPMX19_02889 at 141.933 kb on - strand, within MPMX19_02889 at 141.933 kb on - strand, within MPMX19_02889 at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.189 kb on + strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.190 kb on - strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.308 kb on + strand at 142.309 kb on - strand at 142.309 kb on - strand at 142.309 kb on - strand at 142.309 kb on - strand at 142.356 kb on + strand at 142.356 kb on + strand at 142.356 kb on + strand at 142.357 kb on - strand at 142.357 kb on - strand at 142.357 kb on - strand at 142.821 kb on + strand, within MPMX19_02890 at 142.821 kb on + strand, within MPMX19_02890 at 142.821 kb on + strand, within MPMX19_02890 at 142.822 kb on - strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.136 kb on + strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.137 kb on - strand, within MPMX19_02890 at 143.145 kb on + strand, within MPMX19_02890 at 143.145 kb on + strand, within MPMX19_02890 at 143.145 kb on + strand, within MPMX19_02890 at 143.145 kb on + strand, within MPMX19_02890 at 143.146 kb on - strand, within MPMX19_02890
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 139,762 + MPMX19_02888 0.24 -0.5 139,762 + MPMX19_02888 0.24 -0.4 139,762 + MPMX19_02888 0.24 -1.1 139,762 + MPMX19_02888 0.24 -1.4 139,763 - MPMX19_02888 0.24 -0.8 139,763 - MPMX19_02888 0.24 -0.4 139,763 - MPMX19_02888 0.24 -0.7 139,763 - MPMX19_02888 0.24 -1.3 139,763 - MPMX19_02888 0.24 +0.7 139,763 - MPMX19_02888 0.24 +0.0 139,763 - MPMX19_02888 0.24 -0.4 139,879 + MPMX19_02888 0.35 -0.3 139,921 + MPMX19_02888 0.39 -0.0 139,921 + MPMX19_02888 0.39 -0.9 139,921 + MPMX19_02888 0.39 -0.7 139,921 + MPMX19_02888 0.39 -0.2 139,921 + MPMX19_02888 0.39 -1.8 139,921 + MPMX19_02888 0.39 -0.3 139,921 + MPMX19_02888 0.39 -1.2 139,922 - MPMX19_02888 0.39 -0.6 139,922 - MPMX19_02888 0.39 +0.3 139,922 - MPMX19_02888 0.39 -0.1 139,922 - MPMX19_02888 0.39 -0.6 139,922 - MPMX19_02888 0.39 -0.3 140,198 - MPMX19_02888 0.64 +0.2 140,198 - MPMX19_02888 0.64 -0.2 140,215 + MPMX19_02888 0.65 +0.9 140,215 + MPMX19_02888 0.65 -2.4 140,215 + MPMX19_02888 0.65 -1.1 140,215 + MPMX19_02888 0.65 -2.0 140,215 + MPMX19_02888 0.65 +2.2 140,215 + MPMX19_02888 0.65 -2.3 140,215 + MPMX19_02888 0.65 -0.3 140,215 + MPMX19_02888 0.65 +0.5 140,215 + MPMX19_02888 0.65 +1.2 140,215 + MPMX19_02888 0.65 +0.3 140,215 + MPMX19_02888 0.65 -0.4 140,216 - MPMX19_02888 0.66 -0.8 140,216 - MPMX19_02888 0.66 -0.7 140,216 - MPMX19_02888 0.66 -2.2 140,216 - MPMX19_02888 0.66 -1.3 140,216 - MPMX19_02888 0.66 +0.3 140,216 - MPMX19_02888 0.66 -0.1 140,216 - MPMX19_02888 0.66 -1.3 140,326 + MPMX19_02888 0.76 +0.3 140,327 - MPMX19_02888 0.76 +0.2 140,327 - MPMX19_02888 0.76 -0.8 140,350 + MPMX19_02888 0.78 +0.1 140,350 + MPMX19_02888 0.78 +2.7 140,503 + +0.5 140,503 + +0.0 140,503 + +1.0 140,503 + -1.2 140,503 + -0.2 140,503 + -1.3 140,503 + +0.2 140,503 + -0.6 140,503 + +1.2 140,503 + -0.8 140,503 + -0.7 140,503 + +0.5 140,503 + +0.6 140,504 - -0.8 140,504 - -1.3 140,504 - +0.3 140,504 - +0.3 140,504 - -0.6 140,504 - -0.8 140,504 - +0.3 140,504 - -1.4 140,504 - -0.1 140,504 - +0.3 140,597 + -0.7 140,597 + -0.7 140,598 - -0.4 140,598 - -1.3 140,598 - +1.2 140,668 + -0.4 140,668 + +0.4 140,669 - +0.4 140,669 - +0.8 140,669 - +0.0 140,669 - -2.2 140,669 - -1.5 140,669 - -0.7 140,926 + MPMX19_02889 0.16 +0.8 141,022 + MPMX19_02889 0.22 -0.9 141,022 + MPMX19_02889 0.22 -1.2 141,023 - MPMX19_02889 0.22 -0.1 141,023 - MPMX19_02889 0.22 -0.3 141,023 - MPMX19_02889 0.22 +1.3 141,023 - MPMX19_02889 0.22 -0.4 141,193 + MPMX19_02889 0.33 -0.5 141,193 + MPMX19_02889 0.33 -1.1 141,194 - MPMX19_02889 0.33 -0.6 141,194 - MPMX19_02889 0.33 -1.7 141,194 - MPMX19_02889 0.33 -2.1 141,194 - MPMX19_02889 0.33 +1.7 141,202 + MPMX19_02889 0.34 +0.9 141,203 - MPMX19_02889 0.34 -0.9 141,343 + MPMX19_02889 0.43 -0.3 141,703 + MPMX19_02889 0.67 -0.9 141,703 + MPMX19_02889 0.67 +0.2 141,703 + MPMX19_02889 0.67 -0.2 141,703 + MPMX19_02889 0.67 +0.4 141,703 + MPMX19_02889 0.67 +0.7 141,703 + MPMX19_02889 0.67 -1.3 141,704 - MPMX19_02889 0.67 +1.2 141,704 - MPMX19_02889 0.67 -0.1 141,704 - MPMX19_02889 0.67 +0.4 141,704 - MPMX19_02889 0.67 -1.8 141,704 - MPMX19_02889 0.67 -0.2 141,742 + MPMX19_02889 0.69 +1.5 141,878 + MPMX19_02889 0.78 -0.3 141,878 + MPMX19_02889 0.78 +1.3 141,878 + MPMX19_02889 0.78 -0.7 141,878 + MPMX19_02889 0.78 -0.1 141,878 + MPMX19_02889 0.78 +0.2 141,878 + MPMX19_02889 0.78 -0.0 141,878 + MPMX19_02889 0.78 +0.3 141,878 + MPMX19_02889 0.78 +0.0 141,878 + MPMX19_02889 0.78 +0.8 141,878 + MPMX19_02889 0.78 -1.2 141,878 + MPMX19_02889 0.78 -2.0 141,878 + MPMX19_02889 0.78 +0.2 141,878 + MPMX19_02889 0.78 -0.7 141,878 + MPMX19_02889 0.78 -0.8 141,878 + MPMX19_02889 0.78 +0.6 141,878 + MPMX19_02889 0.78 -0.8 141,878 + MPMX19_02889 0.78 -2.0 141,878 + MPMX19_02889 0.78 +0.7 141,878 + MPMX19_02889 0.78 -0.0 141,878 + MPMX19_02889 0.78 +0.7 141,879 - MPMX19_02889 0.78 +0.7 141,879 - MPMX19_02889 0.78 +0.4 141,879 - MPMX19_02889 0.78 -1.0 141,879 - MPMX19_02889 0.78 -0.1 141,879 - MPMX19_02889 0.78 +0.2 141,879 - MPMX19_02889 0.78 -0.1 141,879 - MPMX19_02889 0.78 -1.4 141,879 - MPMX19_02889 0.78 +0.4 141,879 - MPMX19_02889 0.78 -0.5 141,879 - MPMX19_02889 0.78 -0.8 141,879 - MPMX19_02889 0.78 +1.7 141,879 - MPMX19_02889 0.78 -0.1 141,879 - MPMX19_02889 0.78 +0.3 141,879 - MPMX19_02889 0.78 +0.2 141,879 - MPMX19_02889 0.78 -0.7 141,879 - MPMX19_02889 0.78 +0.3 141,879 - MPMX19_02889 0.78 -0.6 141,879 - MPMX19_02889 0.78 -0.0 141,879 - MPMX19_02889 0.78 -1.4 141,880 + MPMX19_02889 0.78 +0.4 141,880 + MPMX19_02889 0.78 -0.7 141,880 + MPMX19_02889 0.78 +0.3 141,933 - MPMX19_02889 0.82 -0.1 141,933 - MPMX19_02889 0.82 +1.5 142,189 + -1.2 142,189 + -0.8 142,189 + +0.3 142,189 + +0.4 142,189 + -0.1 142,189 + -0.8 142,189 + +0.2 142,189 + -1.7 142,189 + +1.1 142,189 + +1.0 142,189 + -0.1 142,189 + -0.1 142,189 + +0.6 142,189 + +1.0 142,189 + +1.7 142,189 + +0.2 142,190 - -0.4 142,190 - +0.2 142,190 - -1.6 142,190 - -0.1 142,190 - +1.1 142,190 - -2.0 142,190 - +0.6 142,190 - -1.7 142,190 - +1.5 142,190 - -1.1 142,190 - +1.0 142,190 - -0.3 142,190 - +0.2 142,308 + -0.8 142,308 + +0.4 142,308 + +0.2 142,308 + -0.8 142,308 + +1.3 142,308 + -1.8 142,308 + -0.8 142,309 - +0.3 142,309 - -0.6 142,309 - -1.2 142,309 - -2.3 142,356 + -0.3 142,356 + -1.3 142,356 + +0.7 142,357 - -1.1 142,357 - -1.3 142,357 - +0.2 142,821 + MPMX19_02890 0.42 +0.0 142,821 + MPMX19_02890 0.42 +0.2 142,821 + MPMX19_02890 0.42 -2.3 142,822 - MPMX19_02890 0.42 +1.0 143,136 + MPMX19_02890 0.66 -0.1 143,136 + MPMX19_02890 0.66 -0.6 143,136 + MPMX19_02890 0.66 +0.1 143,136 + MPMX19_02890 0.66 -0.3 143,136 + MPMX19_02890 0.66 -0.3 143,136 + MPMX19_02890 0.66 +1.9 143,136 + MPMX19_02890 0.66 -0.4 143,136 + MPMX19_02890 0.66 +0.3 143,137 - MPMX19_02890 0.66 -1.3 143,137 - MPMX19_02890 0.66 +0.2 143,137 - MPMX19_02890 0.66 -1.1 143,137 - MPMX19_02890 0.66 -0.3 143,137 - MPMX19_02890 0.66 -1.4 143,137 - MPMX19_02890 0.66 +0.0 143,137 - MPMX19_02890 0.66 -0.7 143,137 - MPMX19_02890 0.66 -2.0 143,137 - MPMX19_02890 0.66 +0.2 143,145 + MPMX19_02890 0.66 +0.7 143,145 + MPMX19_02890 0.66 -0.9 143,145 + MPMX19_02890 0.66 -1.0 143,145 + MPMX19_02890 0.66 -0.5 143,146 - MPMX19_02890 0.67 +0.5
Or see this region's nucleotide sequence