Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02801 and MPMX19_02802 overlap by 8 nucleotides MPMX19_02802 and MPMX19_02803 are separated by 5 nucleotides MPMX19_02803 and MPMX19_02804 are separated by 16 nucleotides
MPMX19_02801: MPMX19_02801 - Lipopolysaccharide export system ATP-binding protein LptB, at 35,850 to 36,641
_02801
MPMX19_02802: MPMX19_02802 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 36,634 to 37,341
_02802
MPMX19_02803: MPMX19_02803 - putative FAD-linked oxidoreductase, at 37,347 to 38,789
_02803
MPMX19_02804: MPMX19_02804 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 38,806 to 39,612
_02804
Position (kb) 37
38
39 Strain fitness (log2 ratio) -2
-1
0
1
2 at 36.612 kb on + strand at 36.612 kb on + strand at 36.612 kb on + strand at 36.612 kb on + strand at 36.612 kb on + strand at 36.613 kb on - strand at 36.613 kb on - strand at 36.613 kb on - strand at 36.639 kb on + strand at 36.639 kb on + strand at 36.639 kb on + strand at 36.639 kb on + strand at 36.640 kb on - strand at 36.640 kb on - strand at 36.831 kb on + strand, within MPMX19_02802 at 36.832 kb on - strand, within MPMX19_02802 at 36.989 kb on - strand, within MPMX19_02802 at 36.989 kb on - strand, within MPMX19_02802 at 36.989 kb on - strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.327 kb on + strand at 37.327 kb on + strand at 37.327 kb on + strand at 37.327 kb on + strand at 37.327 kb on + strand at 37.327 kb on + strand at 37.328 kb on - strand at 37.328 kb on - strand at 37.328 kb on - strand at 37.920 kb on + strand, within MPMX19_02803 at 37.920 kb on + strand, within MPMX19_02803 at 38.190 kb on + strand, within MPMX19_02803 at 38.191 kb on - strand, within MPMX19_02803 at 38.191 kb on - strand, within MPMX19_02803 at 38.191 kb on - strand, within MPMX19_02803 at 38.492 kb on + strand, within MPMX19_02803 at 38.493 kb on - strand, within MPMX19_02803 at 38.848 kb on + strand at 39.080 kb on + strand, within MPMX19_02804 at 39.081 kb on - strand, within MPMX19_02804 at 39.081 kb on - strand, within MPMX19_02804 at 39.343 kb on + strand, within MPMX19_02804 at 39.343 kb on + strand, within MPMX19_02804 at 39.344 kb on - strand, within MPMX19_02804 at 39.344 kb on - strand, within MPMX19_02804 at 39.530 kb on + strand, within MPMX19_02804 at 39.531 kb on - strand, within MPMX19_02804 at 39.531 kb on - strand, within MPMX19_02804 at 39.557 kb on + strand at 39.557 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.649 kb on + strand at 39.649 kb on + strand at 39.650 kb on - strand at 39.650 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 36,612 + +0.0 36,612 + -0.2 36,612 + -1.6 36,612 + +0.2 36,612 + +0.5 36,613 - -2.1 36,613 - -0.8 36,613 - -0.5 36,639 + -0.8 36,639 + -0.7 36,639 + +0.4 36,639 + +0.7 36,640 - +0.7 36,640 - -0.8 36,831 + MPMX19_02802 0.28 -0.3 36,832 - MPMX19_02802 0.28 -0.4 36,989 - MPMX19_02802 0.50 -0.8 36,989 - MPMX19_02802 0.50 -0.3 36,989 - MPMX19_02802 0.50 -2.2 37,249 + MPMX19_02802 0.87 +0.4 37,249 + MPMX19_02802 0.87 -0.1 37,249 + MPMX19_02802 0.87 -0.1 37,249 + MPMX19_02802 0.87 +0.6 37,249 + MPMX19_02802 0.87 -0.5 37,249 + MPMX19_02802 0.87 +0.4 37,249 + MPMX19_02802 0.87 +0.2 37,249 + MPMX19_02802 0.87 -0.9 37,249 + MPMX19_02802 0.87 +1.0 37,250 - MPMX19_02802 0.87 +1.2 37,250 - MPMX19_02802 0.87 -0.6 37,250 - MPMX19_02802 0.87 +1.0 37,250 - MPMX19_02802 0.87 +0.3 37,250 - MPMX19_02802 0.87 +0.6 37,250 - MPMX19_02802 0.87 -1.1 37,250 - MPMX19_02802 0.87 +0.0 37,250 - MPMX19_02802 0.87 +0.1 37,250 - MPMX19_02802 0.87 +1.6 37,250 - MPMX19_02802 0.87 -2.4 37,250 - MPMX19_02802 0.87 +0.5 37,327 + -0.3 37,327 + -0.3 37,327 + -0.8 37,327 + -1.7 37,327 + +0.1 37,327 + -0.5 37,328 - +1.3 37,328 - -0.2 37,328 - +0.7 37,920 + MPMX19_02803 0.40 -1.6 37,920 + MPMX19_02803 0.40 -1.5 38,190 + MPMX19_02803 0.58 +0.8 38,191 - MPMX19_02803 0.58 +0.7 38,191 - MPMX19_02803 0.58 -2.3 38,191 - MPMX19_02803 0.58 +1.1 38,492 + MPMX19_02803 0.79 -0.1 38,493 - MPMX19_02803 0.79 +0.4 38,848 + +1.1 39,080 + MPMX19_02804 0.34 -1.3 39,081 - MPMX19_02804 0.34 +0.5 39,081 - MPMX19_02804 0.34 +1.0 39,343 + MPMX19_02804 0.67 -1.2 39,343 + MPMX19_02804 0.67 +0.4 39,344 - MPMX19_02804 0.67 +1.5 39,344 - MPMX19_02804 0.67 +1.7 39,530 + MPMX19_02804 0.90 +0.6 39,531 - MPMX19_02804 0.90 -0.8 39,531 - MPMX19_02804 0.90 +2.2 39,557 + -0.2 39,557 + -0.1 39,566 + -1.1 39,566 + -0.1 39,566 + -0.6 39,566 + +0.1 39,566 + -0.2 39,566 + -0.6 39,566 + -0.2 39,566 + -0.3 39,566 + -0.7 39,566 + +0.4 39,566 + -0.4 39,566 + -0.9 39,566 + -0.4 39,566 + -0.0 39,566 + -0.5 39,566 + -1.1 39,566 + +1.2 39,566 + +0.3 39,567 - +0.7 39,567 - +1.1 39,567 - -0.9 39,567 - -0.8 39,567 - -0.7 39,567 - -2.7 39,567 - +0.9 39,567 - +0.4 39,567 - +0.5 39,567 - +0.9 39,567 - -1.3 39,649 + +0.2 39,649 + -0.3 39,650 - -1.4 39,650 - -0.4
Or see this region's nucleotide sequence