Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02766 and MPMX19_02767 are separated by 195 nucleotides
MPMX19_02766: MPMX19_02766 - putative enoyl-CoA hydratase echA8, at 2,910,708 to 2,911,484
_02766
MPMX19_02767: MPMX19_02767 - 30S ribosomal protein S20, at 2,911,680 to 2,911,940
_02767
Position (kb)
2911
2912 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2910.714 kb on + strand at 2910.714 kb on + strand at 2910.714 kb on + strand at 2910.714 kb on + strand at 2910.715 kb on - strand at 2910.715 kb on - strand at 2910.715 kb on - strand at 2910.715 kb on - strand at 2910.715 kb on - strand at 2910.715 kb on - strand at 2910.715 kb on - strand at 2910.715 kb on - strand at 2910.930 kb on + strand, within MPMX19_02766 at 2910.930 kb on + strand, within MPMX19_02766 at 2910.930 kb on + strand, within MPMX19_02766 at 2910.930 kb on + strand, within MPMX19_02766 at 2910.930 kb on + strand, within MPMX19_02766 at 2910.930 kb on + strand, within MPMX19_02766 at 2910.930 kb on + strand, within MPMX19_02766 at 2910.930 kb on + strand, within MPMX19_02766 at 2910.930 kb on + strand, within MPMX19_02766 at 2910.930 kb on + strand, within MPMX19_02766 at 2910.930 kb on + strand, within MPMX19_02766 at 2910.931 kb on - strand, within MPMX19_02766 at 2910.931 kb on - strand, within MPMX19_02766 at 2910.931 kb on - strand, within MPMX19_02766 at 2910.931 kb on - strand, within MPMX19_02766 at 2910.931 kb on - strand, within MPMX19_02766 at 2910.931 kb on - strand, within MPMX19_02766 at 2910.931 kb on - strand, within MPMX19_02766 at 2910.931 kb on - strand, within MPMX19_02766 at 2910.931 kb on - strand, within MPMX19_02766 at 2910.931 kb on - strand, within MPMX19_02766 at 2910.931 kb on - strand, within MPMX19_02766 at 2910.931 kb on - strand, within MPMX19_02766 at 2910.932 kb on + strand, within MPMX19_02766 at 2910.932 kb on + strand, within MPMX19_02766 at 2910.932 kb on + strand, within MPMX19_02766 at 2910.932 kb on + strand, within MPMX19_02766 at 2910.932 kb on + strand, within MPMX19_02766 at 2910.932 kb on + strand, within MPMX19_02766 at 2910.932 kb on + strand, within MPMX19_02766 at 2910.932 kb on + strand, within MPMX19_02766 at 2910.932 kb on + strand, within MPMX19_02766 at 2910.932 kb on + strand, within MPMX19_02766 at 2910.932 kb on + strand, within MPMX19_02766 at 2910.932 kb on + strand, within MPMX19_02766 at 2910.932 kb on + strand, within MPMX19_02766 at 2910.932 kb on + strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.933 kb on - strand, within MPMX19_02766 at 2910.942 kb on + strand, within MPMX19_02766 at 2910.942 kb on + strand, within MPMX19_02766 at 2910.942 kb on + strand, within MPMX19_02766 at 2910.942 kb on + strand, within MPMX19_02766 at 2910.942 kb on + strand, within MPMX19_02766 at 2910.942 kb on + strand, within MPMX19_02766 at 2910.942 kb on + strand, within MPMX19_02766 at 2910.942 kb on + strand, within MPMX19_02766 at 2910.943 kb on - strand, within MPMX19_02766 at 2910.943 kb on - strand, within MPMX19_02766 at 2910.943 kb on - strand, within MPMX19_02766 at 2910.943 kb on - strand, within MPMX19_02766 at 2910.943 kb on - strand, within MPMX19_02766 at 2910.943 kb on - strand, within MPMX19_02766 at 2910.943 kb on - strand, within MPMX19_02766 at 2910.943 kb on - strand, within MPMX19_02766 at 2910.943 kb on - strand, within MPMX19_02766 at 2910.943 kb on - strand, within MPMX19_02766 at 2910.943 kb on - strand, within MPMX19_02766 at 2910.943 kb on - strand, within MPMX19_02766 at 2911.353 kb on + strand, within MPMX19_02766 at 2911.353 kb on + strand, within MPMX19_02766 at 2911.353 kb on + strand, within MPMX19_02766 at 2911.353 kb on + strand, within MPMX19_02766 at 2911.353 kb on + strand, within MPMX19_02766 at 2911.354 kb on - strand, within MPMX19_02766 at 2911.354 kb on - strand, within MPMX19_02766 at 2911.354 kb on - strand, within MPMX19_02766 at 2911.579 kb on + strand at 2912.038 kb on + strand at 2912.038 kb on + strand at 2912.039 kb on - strand at 2912.059 kb on + strand at 2912.059 kb on + strand at 2912.060 kb on - strand at 2912.060 kb on - strand at 2912.101 kb on + strand at 2912.101 kb on + strand at 2912.155 kb on + strand at 2912.155 kb on + strand at 2912.292 kb on + strand at 2912.292 kb on + strand at 2912.292 kb on + strand at 2912.296 kb on + strand at 2912.296 kb on + strand at 2912.296 kb on + strand at 2912.361 kb on + strand at 2912.361 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 2,910,714 + +0.7 2,910,714 + -0.3 2,910,714 + -1.1 2,910,714 + +0.9 2,910,715 - -0.8 2,910,715 - +0.4 2,910,715 - +0.7 2,910,715 - +0.3 2,910,715 - +0.7 2,910,715 - -0.9 2,910,715 - -1.2 2,910,715 - -1.3 2,910,930 + MPMX19_02766 0.29 +0.2 2,910,930 + MPMX19_02766 0.29 +0.4 2,910,930 + MPMX19_02766 0.29 +0.2 2,910,930 + MPMX19_02766 0.29 -0.8 2,910,930 + MPMX19_02766 0.29 -1.4 2,910,930 + MPMX19_02766 0.29 +0.4 2,910,930 + MPMX19_02766 0.29 +0.9 2,910,930 + MPMX19_02766 0.29 -0.3 2,910,930 + MPMX19_02766 0.29 -0.0 2,910,930 + MPMX19_02766 0.29 -0.8 2,910,930 + MPMX19_02766 0.29 +0.1 2,910,931 - MPMX19_02766 0.29 +0.2 2,910,931 - MPMX19_02766 0.29 -1.4 2,910,931 - MPMX19_02766 0.29 -0.3 2,910,931 - MPMX19_02766 0.29 -0.3 2,910,931 - MPMX19_02766 0.29 -0.5 2,910,931 - MPMX19_02766 0.29 +0.1 2,910,931 - MPMX19_02766 0.29 +0.4 2,910,931 - MPMX19_02766 0.29 -0.8 2,910,931 - MPMX19_02766 0.29 +0.1 2,910,931 - MPMX19_02766 0.29 -0.0 2,910,931 - MPMX19_02766 0.29 -1.7 2,910,931 - MPMX19_02766 0.29 -0.7 2,910,932 + MPMX19_02766 0.29 -0.1 2,910,932 + MPMX19_02766 0.29 -0.0 2,910,932 + MPMX19_02766 0.29 +0.3 2,910,932 + MPMX19_02766 0.29 -0.1 2,910,932 + MPMX19_02766 0.29 -0.8 2,910,932 + MPMX19_02766 0.29 -0.8 2,910,932 + MPMX19_02766 0.29 -0.8 2,910,932 + MPMX19_02766 0.29 +0.2 2,910,932 + MPMX19_02766 0.29 -1.1 2,910,932 + MPMX19_02766 0.29 +0.7 2,910,932 + MPMX19_02766 0.29 -0.9 2,910,932 + MPMX19_02766 0.29 -1.5 2,910,932 + MPMX19_02766 0.29 +0.5 2,910,932 + MPMX19_02766 0.29 -0.9 2,910,933 - MPMX19_02766 0.29 -0.1 2,910,933 - MPMX19_02766 0.29 -1.2 2,910,933 - MPMX19_02766 0.29 -0.3 2,910,933 - MPMX19_02766 0.29 +0.1 2,910,933 - MPMX19_02766 0.29 -0.9 2,910,933 - MPMX19_02766 0.29 +0.9 2,910,933 - MPMX19_02766 0.29 -0.5 2,910,933 - MPMX19_02766 0.29 +0.6 2,910,933 - MPMX19_02766 0.29 +1.3 2,910,933 - MPMX19_02766 0.29 -1.2 2,910,933 - MPMX19_02766 0.29 +0.3 2,910,933 - MPMX19_02766 0.29 -1.5 2,910,933 - MPMX19_02766 0.29 +0.3 2,910,933 - MPMX19_02766 0.29 +1.1 2,910,933 - MPMX19_02766 0.29 +0.9 2,910,933 - MPMX19_02766 0.29 -0.6 2,910,933 - MPMX19_02766 0.29 -0.7 2,910,933 - MPMX19_02766 0.29 -2.1 2,910,933 - MPMX19_02766 0.29 -1.9 2,910,933 - MPMX19_02766 0.29 -0.7 2,910,933 - MPMX19_02766 0.29 -0.0 2,910,942 + MPMX19_02766 0.30 -1.9 2,910,942 + MPMX19_02766 0.30 +0.1 2,910,942 + MPMX19_02766 0.30 +0.0 2,910,942 + MPMX19_02766 0.30 +0.5 2,910,942 + MPMX19_02766 0.30 +0.4 2,910,942 + MPMX19_02766 0.30 -2.1 2,910,942 + MPMX19_02766 0.30 -0.9 2,910,942 + MPMX19_02766 0.30 -0.8 2,910,943 - MPMX19_02766 0.30 -1.5 2,910,943 - MPMX19_02766 0.30 -0.7 2,910,943 - MPMX19_02766 0.30 -0.5 2,910,943 - MPMX19_02766 0.30 -0.2 2,910,943 - MPMX19_02766 0.30 +0.6 2,910,943 - MPMX19_02766 0.30 -0.7 2,910,943 - MPMX19_02766 0.30 -0.6 2,910,943 - MPMX19_02766 0.30 +0.0 2,910,943 - MPMX19_02766 0.30 +0.3 2,910,943 - MPMX19_02766 0.30 -2.8 2,910,943 - MPMX19_02766 0.30 -1.0 2,910,943 - MPMX19_02766 0.30 -1.1 2,911,353 + MPMX19_02766 0.83 -2.6 2,911,353 + MPMX19_02766 0.83 +0.9 2,911,353 + MPMX19_02766 0.83 +0.1 2,911,353 + MPMX19_02766 0.83 -1.3 2,911,353 + MPMX19_02766 0.83 -0.5 2,911,354 - MPMX19_02766 0.83 -1.5 2,911,354 - MPMX19_02766 0.83 -1.8 2,911,354 - MPMX19_02766 0.83 +0.9 2,911,579 + +0.3 2,912,038 + +1.3 2,912,038 + -0.7 2,912,039 - -1.0 2,912,059 + -0.1 2,912,059 + -0.9 2,912,060 - +0.5 2,912,060 - -0.1 2,912,101 + -0.7 2,912,101 + -1.4 2,912,155 + +0.1 2,912,155 + -0.7 2,912,292 + -1.3 2,912,292 + -1.0 2,912,292 + +0.1 2,912,296 + +0.5 2,912,296 + +0.3 2,912,296 + +1.3 2,912,361 + -1.3 2,912,361 + -1.1
Or see this region's nucleotide sequence