Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02742

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02739 and MPMX19_02740 are separated by 164 nucleotidesMPMX19_02740 and MPMX19_02741 are separated by 305 nucleotidesMPMX19_02741 and MPMX19_02742 are separated by 2 nucleotidesMPMX19_02742 and MPMX19_02743 are separated by 1 nucleotidesMPMX19_02743 and MPMX19_02744 overlap by 4 nucleotides MPMX19_02739: MPMX19_02739 - Dihydrofolate synthase/folylpolyglutamate synthase, at 2,883,759 to 2,885,129 _02739 MPMX19_02740: MPMX19_02740 - tRNA-Ala, at 2,885,294 to 2,885,369 _02740 MPMX19_02741: MPMX19_02741 - hypothetical protein, at 2,885,675 to 2,885,959 _02741 MPMX19_02742: MPMX19_02742 - hypothetical protein, at 2,885,962 to 2,886,315 _02742 MPMX19_02743: MPMX19_02743 - Bifunctional protein FolD protein, at 2,886,317 to 2,887,222 _02743 MPMX19_02744: MPMX19_02744 - Magnesium transport protein CorA, at 2,887,219 to 2,888,214 _02744 Position (kb) 2885 2886 2887Strain fitness (log2 ratio) -2 -1 0 1at 2885.259 kb on - strandat 2885.517 kb on + strandat 2885.517 kb on + strandat 2885.517 kb on + strandat 2885.517 kb on + strandat 2885.517 kb on + strandat 2885.517 kb on + strandat 2885.517 kb on + strandat 2885.517 kb on + strandat 2885.518 kb on - strandat 2885.518 kb on - strandat 2885.518 kb on - strandat 2885.518 kb on - strandat 2885.518 kb on - strandat 2885.518 kb on - strandat 2885.518 kb on - strandat 2885.518 kb on - strandat 2885.587 kb on + strandat 2885.587 kb on + strandat 2885.593 kb on + strandat 2885.593 kb on + strandat 2885.593 kb on + strandat 2885.593 kb on + strandat 2885.593 kb on + strandat 2885.593 kb on + strandat 2885.593 kb on + strandat 2885.942 kb on + strandat 2885.942 kb on + strandat 2886.152 kb on + strand, within MPMX19_02742at 2886.152 kb on + strand, within MPMX19_02742at 2886.152 kb on + strand, within MPMX19_02742at 2886.152 kb on + strand, within MPMX19_02742at 2886.152 kb on + strand, within MPMX19_02742at 2886.152 kb on + strand, within MPMX19_02742at 2886.313 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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2,885,259 - -1.8
2,885,517 + -0.6
2,885,517 + +0.3
2,885,517 + -0.4
2,885,517 + -0.3
2,885,517 + -0.0
2,885,517 + +0.5
2,885,517 + -0.3
2,885,517 + -1.3
2,885,518 - -0.3
2,885,518 - -1.0
2,885,518 - -0.6
2,885,518 - +0.6
2,885,518 - -2.1
2,885,518 - +0.4
2,885,518 - -1.2
2,885,518 - +0.3
2,885,587 + +1.2
2,885,587 + -0.8
2,885,593 + +0.6
2,885,593 + +0.9
2,885,593 + -1.6
2,885,593 + +0.6
2,885,593 + -0.9
2,885,593 + -0.8
2,885,593 + +0.1
2,885,942 + +0.7
2,885,942 + -0.5
2,886,152 + MPMX19_02742 0.54 -1.4
2,886,152 + MPMX19_02742 0.54 -2.3
2,886,152 + MPMX19_02742 0.54 -0.8
2,886,152 + MPMX19_02742 0.54 -1.5
2,886,152 + MPMX19_02742 0.54 -1.1
2,886,152 + MPMX19_02742 0.54 -0.5
2,886,313 + -0.5

Or see this region's nucleotide sequence