Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02739 and MPMX19_02740 are separated by 164 nucleotides MPMX19_02740 and MPMX19_02741 are separated by 305 nucleotides MPMX19_02741 and MPMX19_02742 are separated by 2 nucleotides MPMX19_02742 and MPMX19_02743 are separated by 1 nucleotides MPMX19_02743 and MPMX19_02744 overlap by 4 nucleotides
MPMX19_02739: MPMX19_02739 - Dihydrofolate synthase/folylpolyglutamate synthase, at 2,883,759 to 2,885,129
_02739
MPMX19_02740: MPMX19_02740 - tRNA-Ala, at 2,885,294 to 2,885,369
_02740
MPMX19_02741: MPMX19_02741 - hypothetical protein, at 2,885,675 to 2,885,959
_02741
MPMX19_02742: MPMX19_02742 - hypothetical protein, at 2,885,962 to 2,886,315
_02742
MPMX19_02743: MPMX19_02743 - Bifunctional protein FolD protein, at 2,886,317 to 2,887,222
_02743
MPMX19_02744: MPMX19_02744 - Magnesium transport protein CorA, at 2,887,219 to 2,888,214
_02744
Position (kb)
2885
2886
2887 Strain fitness (log2 ratio)
-2
-1
0
1 at 2885.259 kb on - strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.587 kb on + strand at 2885.587 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.942 kb on + strand at 2885.942 kb on + strand at 2886.152 kb on + strand, within MPMX19_02742 at 2886.152 kb on + strand, within MPMX19_02742 at 2886.152 kb on + strand, within MPMX19_02742 at 2886.152 kb on + strand, within MPMX19_02742 at 2886.152 kb on + strand, within MPMX19_02742 at 2886.152 kb on + strand, within MPMX19_02742 at 2886.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 2,885,259 - -1.8 2,885,517 + -0.6 2,885,517 + +0.3 2,885,517 + -0.4 2,885,517 + -0.3 2,885,517 + -0.0 2,885,517 + +0.5 2,885,517 + -0.3 2,885,517 + -1.3 2,885,518 - -0.3 2,885,518 - -1.0 2,885,518 - -0.6 2,885,518 - +0.6 2,885,518 - -2.1 2,885,518 - +0.4 2,885,518 - -1.2 2,885,518 - +0.3 2,885,587 + +1.2 2,885,587 + -0.8 2,885,593 + +0.6 2,885,593 + +0.9 2,885,593 + -1.6 2,885,593 + +0.6 2,885,593 + -0.9 2,885,593 + -0.8 2,885,593 + +0.1 2,885,942 + +0.7 2,885,942 + -0.5 2,886,152 + MPMX19_02742 0.54 -1.4 2,886,152 + MPMX19_02742 0.54 -2.3 2,886,152 + MPMX19_02742 0.54 -0.8 2,886,152 + MPMX19_02742 0.54 -1.5 2,886,152 + MPMX19_02742 0.54 -1.1 2,886,152 + MPMX19_02742 0.54 -0.5 2,886,313 + -0.5
Or see this region's nucleotide sequence