Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01585

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01584 and MPMX19_01585 are separated by 276 nucleotidesMPMX19_01585 and MPMX19_01586 overlap by 4 nucleotides MPMX19_01584: MPMX19_01584 - Deoxyribodipyrimidine photo-lyase, at 1,656,970 to 1,658,442 _01584 MPMX19_01585: MPMX19_01585 - Zinc uptake regulation protein, at 1,658,719 to 1,659,189 _01585 MPMX19_01586: MPMX19_01586 - hypothetical protein, at 1,659,186 to 1,660,355 _01586 Position (kb) 1658 1659 1660Strain fitness (log2 ratio) -2 -1 0 1 2at 1657.964 kb on - strand, within MPMX19_01584at 1657.964 kb on - strand, within MPMX19_01584at 1658.236 kb on + strand, within MPMX19_01584at 1658.236 kb on + strand, within MPMX19_01584at 1658.236 kb on + strand, within MPMX19_01584at 1658.236 kb on + strand, within MPMX19_01584at 1658.236 kb on + strand, within MPMX19_01584at 1658.237 kb on - strand, within MPMX19_01584at 1658.237 kb on - strand, within MPMX19_01584at 1658.237 kb on - strand, within MPMX19_01584at 1658.237 kb on - strand, within MPMX19_01584at 1658.237 kb on - strand, within MPMX19_01584at 1658.237 kb on - strand, within MPMX19_01584at 1658.237 kb on - strand, within MPMX19_01584at 1658.237 kb on - strand, within MPMX19_01584at 1658.237 kb on - strand, within MPMX19_01584at 1658.237 kb on - strand, within MPMX19_01584at 1658.237 kb on - strand, within MPMX19_01584at 1658.237 kb on - strand, within MPMX19_01584at 1658.237 kb on - strand, within MPMX19_01584at 1658.237 kb on - strand, within MPMX19_01584at 1658.237 kb on - strand, within MPMX19_01584at 1658.248 kb on + strand, within MPMX19_01584at 1658.248 kb on + strand, within MPMX19_01584at 1658.248 kb on + strand, within MPMX19_01584at 1658.248 kb on + strand, within MPMX19_01584at 1658.248 kb on + strand, within MPMX19_01584at 1658.248 kb on + strand, within MPMX19_01584at 1658.249 kb on - strand, within MPMX19_01584at 1658.249 kb on - strand, within MPMX19_01584at 1658.249 kb on - strand, within MPMX19_01584at 1658.249 kb on - strand, within MPMX19_01584at 1658.249 kb on - strand, within MPMX19_01584at 1658.249 kb on - strand, within MPMX19_01584at 1658.350 kb on + strandat 1658.351 kb on - strandat 1658.404 kb on + strandat 1658.404 kb on + strandat 1658.404 kb on + strandat 1658.404 kb on + strandat 1658.404 kb on + strandat 1658.404 kb on + strandat 1658.404 kb on + strandat 1658.404 kb on + strandat 1658.404 kb on + strandat 1658.404 kb on + strandat 1658.404 kb on + strandat 1658.405 kb on - strandat 1658.405 kb on - strandat 1658.405 kb on - strandat 1658.405 kb on - strandat 1658.405 kb on - strandat 1658.405 kb on - strandat 1658.405 kb on - strandat 1658.405 kb on - strandat 1658.501 kb on - strandat 1658.706 kb on + strandat 1658.739 kb on + strandat 1658.739 kb on + strandat 1658.739 kb on + strandat 1658.739 kb on + strandat 1658.739 kb on + strandat 1658.739 kb on + strandat 1658.740 kb on - strandat 1658.740 kb on - strandat 1658.740 kb on - strandat 1658.740 kb on - strandat 1658.740 kb on - strandat 1658.740 kb on - strandat 1658.740 kb on - strandat 1658.740 kb on - strandat 1658.740 kb on - strandat 1658.866 kb on + strand, within MPMX19_01585at 1658.867 kb on - strand, within MPMX19_01585at 1658.867 kb on - strand, within MPMX19_01585at 1658.926 kb on + strand, within MPMX19_01585at 1658.926 kb on + strand, within MPMX19_01585at 1658.926 kb on + strand, within MPMX19_01585at 1658.989 kb on + strand, within MPMX19_01585at 1658.989 kb on + strand, within MPMX19_01585at 1658.989 kb on + strand, within MPMX19_01585at 1658.989 kb on + strand, within MPMX19_01585at 1658.990 kb on - strand, within MPMX19_01585at 1659.816 kb on + strand, within MPMX19_01586at 1659.816 kb on + strand, within MPMX19_01586at 1659.816 kb on + strand, within MPMX19_01586at 1659.816 kb on + strand, within MPMX19_01586at 1659.816 kb on + strand, within MPMX19_01586at 1659.816 kb on + strand, within MPMX19_01586at 1659.816 kb on + strand, within MPMX19_01586at 1659.816 kb on + strand, within MPMX19_01586at 1659.816 kb on + strand, within MPMX19_01586at 1659.817 kb on - strand, within MPMX19_01586at 1659.817 kb on - strand, within MPMX19_01586at 1659.870 kb on + strand, within MPMX19_01586at 1659.871 kb on - strand, within MPMX19_01586at 1659.871 kb on - strand, within MPMX19_01586

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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1,657,964 - MPMX19_01584 0.67 +1.1
1,657,964 - MPMX19_01584 0.67 -1.9
1,658,236 + MPMX19_01584 0.86 -0.3
1,658,236 + MPMX19_01584 0.86 -1.1
1,658,236 + MPMX19_01584 0.86 -2.6
1,658,236 + MPMX19_01584 0.86 -1.2
1,658,236 + MPMX19_01584 0.86 +0.9
1,658,237 - MPMX19_01584 0.86 -0.9
1,658,237 - MPMX19_01584 0.86 -0.9
1,658,237 - MPMX19_01584 0.86 +1.9
1,658,237 - MPMX19_01584 0.86 -0.2
1,658,237 - MPMX19_01584 0.86 -1.1
1,658,237 - MPMX19_01584 0.86 -0.6
1,658,237 - MPMX19_01584 0.86 -0.4
1,658,237 - MPMX19_01584 0.86 -0.7
1,658,237 - MPMX19_01584 0.86 -1.0
1,658,237 - MPMX19_01584 0.86 -1.0
1,658,237 - MPMX19_01584 0.86 +0.7
1,658,237 - MPMX19_01584 0.86 -0.7
1,658,237 - MPMX19_01584 0.86 -0.3
1,658,237 - MPMX19_01584 0.86 -0.4
1,658,237 - MPMX19_01584 0.86 -0.2
1,658,248 + MPMX19_01584 0.87 -0.1
1,658,248 + MPMX19_01584 0.87 -1.1
1,658,248 + MPMX19_01584 0.87 -0.4
1,658,248 + MPMX19_01584 0.87 -1.5
1,658,248 + MPMX19_01584 0.87 -1.0
1,658,248 + MPMX19_01584 0.87 -1.2
1,658,249 - MPMX19_01584 0.87 -0.5
1,658,249 - MPMX19_01584 0.87 +0.6
1,658,249 - MPMX19_01584 0.87 +0.1
1,658,249 - MPMX19_01584 0.87 +0.2
1,658,249 - MPMX19_01584 0.87 -0.2
1,658,249 - MPMX19_01584 0.87 -1.1
1,658,350 + -1.1
1,658,351 - -0.5
1,658,404 + -0.2
1,658,404 + +0.3
1,658,404 + -1.6
1,658,404 + -2.4
1,658,404 + -1.6
1,658,404 + -1.3
1,658,404 + -0.4
1,658,404 + -1.2
1,658,404 + -1.2
1,658,404 + -0.6
1,658,404 + -1.1
1,658,405 - +0.4
1,658,405 - -0.0
1,658,405 - -1.0
1,658,405 - -1.1
1,658,405 - -0.9
1,658,405 - -0.3
1,658,405 - +0.1
1,658,405 - -0.5
1,658,501 - +0.6
1,658,706 + -0.3
1,658,739 + -0.3
1,658,739 + -1.3
1,658,739 + +0.1
1,658,739 + +0.7
1,658,739 + +0.7
1,658,739 + +0.2
1,658,740 - -0.3
1,658,740 - -0.8
1,658,740 - -0.3
1,658,740 - -0.8
1,658,740 - -1.6
1,658,740 - -0.8
1,658,740 - -0.6
1,658,740 - +0.4
1,658,740 - -1.3
1,658,866 + MPMX19_01585 0.31 -0.1
1,658,867 - MPMX19_01585 0.31 +0.9
1,658,867 - MPMX19_01585 0.31 +0.4
1,658,926 + MPMX19_01585 0.44 -1.8
1,658,926 + MPMX19_01585 0.44 -0.5
1,658,926 + MPMX19_01585 0.44 -1.8
1,658,989 + MPMX19_01585 0.57 -0.6
1,658,989 + MPMX19_01585 0.57 -1.1
1,658,989 + MPMX19_01585 0.57 -0.1
1,658,989 + MPMX19_01585 0.57 -1.5
1,658,990 - MPMX19_01585 0.58 -0.1
1,659,816 + MPMX19_01586 0.54 -0.7
1,659,816 + MPMX19_01586 0.54 -0.5
1,659,816 + MPMX19_01586 0.54 -1.3
1,659,816 + MPMX19_01586 0.54 -0.0
1,659,816 + MPMX19_01586 0.54 -1.2
1,659,816 + MPMX19_01586 0.54 -1.2
1,659,816 + MPMX19_01586 0.54 +0.4
1,659,816 + MPMX19_01586 0.54 -0.4
1,659,816 + MPMX19_01586 0.54 -0.8
1,659,817 - MPMX19_01586 0.54 +0.9
1,659,817 - MPMX19_01586 0.54 -1.1
1,659,870 + MPMX19_01586 0.58 -2.0
1,659,871 - MPMX19_01586 0.59 -0.3
1,659,871 - MPMX19_01586 0.59 +0.7

Or see this region's nucleotide sequence