Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01584 and MPMX19_01585 are separated by 276 nucleotides MPMX19_01585 and MPMX19_01586 overlap by 4 nucleotides
MPMX19_01584: MPMX19_01584 - Deoxyribodipyrimidine photo-lyase, at 1,656,970 to 1,658,442
_01584
MPMX19_01585: MPMX19_01585 - Zinc uptake regulation protein, at 1,658,719 to 1,659,189
_01585
MPMX19_01586: MPMX19_01586 - hypothetical protein, at 1,659,186 to 1,660,355
_01586
Position (kb)
1658
1659
1660 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1657.964 kb on - strand, within MPMX19_01584 at 1657.964 kb on - strand, within MPMX19_01584 at 1658.236 kb on + strand, within MPMX19_01584 at 1658.236 kb on + strand, within MPMX19_01584 at 1658.236 kb on + strand, within MPMX19_01584 at 1658.236 kb on + strand, within MPMX19_01584 at 1658.236 kb on + strand, within MPMX19_01584 at 1658.237 kb on - strand, within MPMX19_01584 at 1658.237 kb on - strand, within MPMX19_01584 at 1658.237 kb on - strand, within MPMX19_01584 at 1658.237 kb on - strand, within MPMX19_01584 at 1658.237 kb on - strand, within MPMX19_01584 at 1658.237 kb on - strand, within MPMX19_01584 at 1658.237 kb on - strand, within MPMX19_01584 at 1658.237 kb on - strand, within MPMX19_01584 at 1658.237 kb on - strand, within MPMX19_01584 at 1658.237 kb on - strand, within MPMX19_01584 at 1658.237 kb on - strand, within MPMX19_01584 at 1658.237 kb on - strand, within MPMX19_01584 at 1658.237 kb on - strand, within MPMX19_01584 at 1658.237 kb on - strand, within MPMX19_01584 at 1658.237 kb on - strand, within MPMX19_01584 at 1658.248 kb on + strand, within MPMX19_01584 at 1658.248 kb on + strand, within MPMX19_01584 at 1658.248 kb on + strand, within MPMX19_01584 at 1658.248 kb on + strand, within MPMX19_01584 at 1658.248 kb on + strand, within MPMX19_01584 at 1658.248 kb on + strand, within MPMX19_01584 at 1658.249 kb on - strand, within MPMX19_01584 at 1658.249 kb on - strand, within MPMX19_01584 at 1658.249 kb on - strand, within MPMX19_01584 at 1658.249 kb on - strand, within MPMX19_01584 at 1658.249 kb on - strand, within MPMX19_01584 at 1658.249 kb on - strand, within MPMX19_01584 at 1658.350 kb on + strand at 1658.351 kb on - strand at 1658.404 kb on + strand at 1658.404 kb on + strand at 1658.404 kb on + strand at 1658.404 kb on + strand at 1658.404 kb on + strand at 1658.404 kb on + strand at 1658.404 kb on + strand at 1658.404 kb on + strand at 1658.404 kb on + strand at 1658.404 kb on + strand at 1658.404 kb on + strand at 1658.405 kb on - strand at 1658.405 kb on - strand at 1658.405 kb on - strand at 1658.405 kb on - strand at 1658.405 kb on - strand at 1658.405 kb on - strand at 1658.405 kb on - strand at 1658.405 kb on - strand at 1658.501 kb on - strand at 1658.706 kb on + strand at 1658.739 kb on + strand at 1658.739 kb on + strand at 1658.739 kb on + strand at 1658.739 kb on + strand at 1658.739 kb on + strand at 1658.739 kb on + strand at 1658.740 kb on - strand at 1658.740 kb on - strand at 1658.740 kb on - strand at 1658.740 kb on - strand at 1658.740 kb on - strand at 1658.740 kb on - strand at 1658.740 kb on - strand at 1658.740 kb on - strand at 1658.740 kb on - strand at 1658.866 kb on + strand, within MPMX19_01585 at 1658.867 kb on - strand, within MPMX19_01585 at 1658.867 kb on - strand, within MPMX19_01585 at 1658.926 kb on + strand, within MPMX19_01585 at 1658.926 kb on + strand, within MPMX19_01585 at 1658.926 kb on + strand, within MPMX19_01585 at 1658.989 kb on + strand, within MPMX19_01585 at 1658.989 kb on + strand, within MPMX19_01585 at 1658.989 kb on + strand, within MPMX19_01585 at 1658.989 kb on + strand, within MPMX19_01585 at 1658.990 kb on - strand, within MPMX19_01585 at 1659.816 kb on + strand, within MPMX19_01586 at 1659.816 kb on + strand, within MPMX19_01586 at 1659.816 kb on + strand, within MPMX19_01586 at 1659.816 kb on + strand, within MPMX19_01586 at 1659.816 kb on + strand, within MPMX19_01586 at 1659.816 kb on + strand, within MPMX19_01586 at 1659.816 kb on + strand, within MPMX19_01586 at 1659.816 kb on + strand, within MPMX19_01586 at 1659.816 kb on + strand, within MPMX19_01586 at 1659.817 kb on - strand, within MPMX19_01586 at 1659.817 kb on - strand, within MPMX19_01586 at 1659.870 kb on + strand, within MPMX19_01586 at 1659.871 kb on - strand, within MPMX19_01586 at 1659.871 kb on - strand, within MPMX19_01586
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 1,657,964 - MPMX19_01584 0.67 +1.1 1,657,964 - MPMX19_01584 0.67 -1.9 1,658,236 + MPMX19_01584 0.86 -0.3 1,658,236 + MPMX19_01584 0.86 -1.1 1,658,236 + MPMX19_01584 0.86 -2.6 1,658,236 + MPMX19_01584 0.86 -1.2 1,658,236 + MPMX19_01584 0.86 +0.9 1,658,237 - MPMX19_01584 0.86 -0.9 1,658,237 - MPMX19_01584 0.86 -0.9 1,658,237 - MPMX19_01584 0.86 +1.9 1,658,237 - MPMX19_01584 0.86 -0.2 1,658,237 - MPMX19_01584 0.86 -1.1 1,658,237 - MPMX19_01584 0.86 -0.6 1,658,237 - MPMX19_01584 0.86 -0.4 1,658,237 - MPMX19_01584 0.86 -0.7 1,658,237 - MPMX19_01584 0.86 -1.0 1,658,237 - MPMX19_01584 0.86 -1.0 1,658,237 - MPMX19_01584 0.86 +0.7 1,658,237 - MPMX19_01584 0.86 -0.7 1,658,237 - MPMX19_01584 0.86 -0.3 1,658,237 - MPMX19_01584 0.86 -0.4 1,658,237 - MPMX19_01584 0.86 -0.2 1,658,248 + MPMX19_01584 0.87 -0.1 1,658,248 + MPMX19_01584 0.87 -1.1 1,658,248 + MPMX19_01584 0.87 -0.4 1,658,248 + MPMX19_01584 0.87 -1.5 1,658,248 + MPMX19_01584 0.87 -1.0 1,658,248 + MPMX19_01584 0.87 -1.2 1,658,249 - MPMX19_01584 0.87 -0.5 1,658,249 - MPMX19_01584 0.87 +0.6 1,658,249 - MPMX19_01584 0.87 +0.1 1,658,249 - MPMX19_01584 0.87 +0.2 1,658,249 - MPMX19_01584 0.87 -0.2 1,658,249 - MPMX19_01584 0.87 -1.1 1,658,350 + -1.1 1,658,351 - -0.5 1,658,404 + -0.2 1,658,404 + +0.3 1,658,404 + -1.6 1,658,404 + -2.4 1,658,404 + -1.6 1,658,404 + -1.3 1,658,404 + -0.4 1,658,404 + -1.2 1,658,404 + -1.2 1,658,404 + -0.6 1,658,404 + -1.1 1,658,405 - +0.4 1,658,405 - -0.0 1,658,405 - -1.0 1,658,405 - -1.1 1,658,405 - -0.9 1,658,405 - -0.3 1,658,405 - +0.1 1,658,405 - -0.5 1,658,501 - +0.6 1,658,706 + -0.3 1,658,739 + -0.3 1,658,739 + -1.3 1,658,739 + +0.1 1,658,739 + +0.7 1,658,739 + +0.7 1,658,739 + +0.2 1,658,740 - -0.3 1,658,740 - -0.8 1,658,740 - -0.3 1,658,740 - -0.8 1,658,740 - -1.6 1,658,740 - -0.8 1,658,740 - -0.6 1,658,740 - +0.4 1,658,740 - -1.3 1,658,866 + MPMX19_01585 0.31 -0.1 1,658,867 - MPMX19_01585 0.31 +0.9 1,658,867 - MPMX19_01585 0.31 +0.4 1,658,926 + MPMX19_01585 0.44 -1.8 1,658,926 + MPMX19_01585 0.44 -0.5 1,658,926 + MPMX19_01585 0.44 -1.8 1,658,989 + MPMX19_01585 0.57 -0.6 1,658,989 + MPMX19_01585 0.57 -1.1 1,658,989 + MPMX19_01585 0.57 -0.1 1,658,989 + MPMX19_01585 0.57 -1.5 1,658,990 - MPMX19_01585 0.58 -0.1 1,659,816 + MPMX19_01586 0.54 -0.7 1,659,816 + MPMX19_01586 0.54 -0.5 1,659,816 + MPMX19_01586 0.54 -1.3 1,659,816 + MPMX19_01586 0.54 -0.0 1,659,816 + MPMX19_01586 0.54 -1.2 1,659,816 + MPMX19_01586 0.54 -1.2 1,659,816 + MPMX19_01586 0.54 +0.4 1,659,816 + MPMX19_01586 0.54 -0.4 1,659,816 + MPMX19_01586 0.54 -0.8 1,659,817 - MPMX19_01586 0.54 +0.9 1,659,817 - MPMX19_01586 0.54 -1.1 1,659,870 + MPMX19_01586 0.58 -2.0 1,659,871 - MPMX19_01586 0.59 -0.3 1,659,871 - MPMX19_01586 0.59 +0.7
Or see this region's nucleotide sequence