Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01082 and MPMX19_01083 are separated by 13 nucleotides MPMX19_01083 and MPMX19_01084 overlap by 4 nucleotides MPMX19_01084 and MPMX19_01085 are separated by 89 nucleotides MPMX19_01085 and MPMX19_01086 are separated by 2 nucleotides
MPMX19_01082: MPMX19_01082 - Homoserine kinase, at 1,118,589 to 1,119,572
_01082
MPMX19_01083: MPMX19_01083 - hypothetical protein, at 1,119,586 to 1,120,419
_01083
MPMX19_01084: MPMX19_01084 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 1,120,416 to 1,121,192
_01084
MPMX19_01085: MPMX19_01085 - hypothetical protein, at 1,121,282 to 1,121,842
_01085
MPMX19_01086: MPMX19_01086 - Blue light- and temperature-regulated antirepressor BluF, at 1,121,845 to 1,122,543
_01086
Position (kb) 1120
1121
1122 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1119.632 kb on + strand at 1119.632 kb on + strand at 1119.632 kb on + strand at 1119.633 kb on - strand at 1119.633 kb on - strand at 1119.633 kb on - strand at 1119.633 kb on - strand at 1119.633 kb on - strand at 1119.633 kb on - strand at 1119.633 kb on - strand at 1119.633 kb on - strand at 1119.635 kb on + strand at 1119.635 kb on + strand at 1119.635 kb on + strand at 1119.635 kb on + strand at 1119.636 kb on - strand at 1119.636 kb on - strand at 1119.998 kb on + strand, within MPMX19_01083 at 1119.998 kb on + strand, within MPMX19_01083 at 1119.998 kb on + strand, within MPMX19_01083 at 1119.998 kb on + strand, within MPMX19_01083 at 1119.999 kb on - strand, within MPMX19_01083 at 1119.999 kb on - strand, within MPMX19_01083 at 1120.328 kb on + strand, within MPMX19_01083 at 1120.328 kb on + strand, within MPMX19_01083 at 1120.328 kb on + strand, within MPMX19_01083 at 1120.328 kb on + strand, within MPMX19_01083 at 1120.329 kb on - strand, within MPMX19_01083 at 1120.329 kb on - strand, within MPMX19_01083 at 1120.329 kb on - strand, within MPMX19_01083 at 1120.329 kb on - strand, within MPMX19_01083 at 1120.430 kb on - strand at 1120.469 kb on - strand at 1120.648 kb on + strand, within MPMX19_01084 at 1120.648 kb on + strand, within MPMX19_01084 at 1120.649 kb on - strand, within MPMX19_01084 at 1120.649 kb on - strand, within MPMX19_01084 at 1120.649 kb on - strand, within MPMX19_01084 at 1120.649 kb on - strand, within MPMX19_01084 at 1120.649 kb on - strand, within MPMX19_01084 at 1120.801 kb on + strand, within MPMX19_01084 at 1120.801 kb on + strand, within MPMX19_01084 at 1120.801 kb on + strand, within MPMX19_01084 at 1120.802 kb on - strand, within MPMX19_01084 at 1120.802 kb on - strand, within MPMX19_01084 at 1120.825 kb on + strand, within MPMX19_01084 at 1120.825 kb on + strand, within MPMX19_01084 at 1120.825 kb on + strand, within MPMX19_01084 at 1121.110 kb on + strand, within MPMX19_01084 at 1121.110 kb on + strand, within MPMX19_01084 at 1121.111 kb on - strand, within MPMX19_01084 at 1121.111 kb on - strand, within MPMX19_01084 at 1121.111 kb on - strand, within MPMX19_01084 at 1121.205 kb on + strand at 1121.205 kb on + strand at 1121.205 kb on + strand at 1121.206 kb on - strand at 1121.206 kb on - strand at 1121.206 kb on - strand at 1121.206 kb on - strand at 1121.206 kb on - strand at 1121.206 kb on - strand at 1121.206 kb on - strand at 1121.206 kb on - strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.210 kb on + strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.211 kb on - strand at 1121.225 kb on + strand at 1121.225 kb on + strand at 1121.225 kb on + strand at 1121.225 kb on + strand at 1121.225 kb on + strand at 1121.225 kb on + strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.226 kb on - strand at 1121.340 kb on + strand, within MPMX19_01085 at 1121.340 kb on + strand, within MPMX19_01085 at 1121.341 kb on - strand, within MPMX19_01085 at 1121.341 kb on - strand, within MPMX19_01085 at 1121.350 kb on + strand, within MPMX19_01085 at 1121.350 kb on + strand, within MPMX19_01085 at 1121.350 kb on + strand, within MPMX19_01085 at 1121.350 kb on + strand, within MPMX19_01085 at 1121.351 kb on - strand, within MPMX19_01085 at 1121.351 kb on - strand, within MPMX19_01085 at 1121.408 kb on + strand, within MPMX19_01085 at 1121.451 kb on - strand, within MPMX19_01085 at 1121.451 kb on - strand, within MPMX19_01085 at 1121.585 kb on + strand, within MPMX19_01085 at 1121.585 kb on + strand, within MPMX19_01085 at 1121.585 kb on + strand, within MPMX19_01085 at 1121.585 kb on + strand, within MPMX19_01085 at 1121.586 kb on - strand, within MPMX19_01085 at 1121.586 kb on - strand, within MPMX19_01085 at 1121.586 kb on - strand, within MPMX19_01085 at 1121.651 kb on + strand, within MPMX19_01085 at 1121.651 kb on + strand, within MPMX19_01085 at 1121.652 kb on - strand, within MPMX19_01085 at 1121.704 kb on + strand, within MPMX19_01085 at 1121.723 kb on + strand, within MPMX19_01085 at 1121.723 kb on + strand, within MPMX19_01085 at 1121.723 kb on + strand, within MPMX19_01085 at 1121.723 kb on + strand, within MPMX19_01085 at 1121.724 kb on - strand, within MPMX19_01085 at 1121.724 kb on - strand, within MPMX19_01085 at 1121.724 kb on - strand, within MPMX19_01085 at 1121.750 kb on + strand, within MPMX19_01085 at 1121.751 kb on - strand, within MPMX19_01085 at 1121.792 kb on + strand at 1121.792 kb on + strand at 1121.792 kb on + strand at 1121.792 kb on + strand at 1121.792 kb on + strand at 1121.793 kb on - strand at 1121.793 kb on - strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.810 kb on + strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.811 kb on - strand at 1121.812 kb on + strand at 1121.812 kb on + strand at 1121.812 kb on + strand at 1121.812 kb on + strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.813 kb on - strand at 1121.854 kb on + strand at 1121.855 kb on - strand at 1121.855 kb on - strand at 1121.855 kb on - strand at 1121.855 kb on - strand at 1121.855 kb on - strand at 1121.912 kb on + strand at 1121.912 kb on + strand at 1121.912 kb on + strand at 1121.912 kb on + strand at 1121.912 kb on + strand at 1121.912 kb on + strand at 1121.912 kb on + strand at 1121.913 kb on - strand at 1121.913 kb on - strand at 1121.913 kb on - strand at 1121.913 kb on - strand at 1121.913 kb on - strand at 1121.913 kb on - strand at 1121.913 kb on - strand at 1122.179 kb on + strand, within MPMX19_01086 at 1122.179 kb on + strand, within MPMX19_01086 at 1122.179 kb on + strand, within MPMX19_01086 at 1122.179 kb on + strand, within MPMX19_01086 at 1122.180 kb on - strand, within MPMX19_01086 at 1122.180 kb on - strand, within MPMX19_01086 at 1122.180 kb on - strand, within MPMX19_01086 at 1122.180 kb on - strand, within MPMX19_01086 at 1122.180 kb on - strand, within MPMX19_01086 at 1122.180 kb on - strand, within MPMX19_01086 at 1122.180 kb on - strand, within MPMX19_01086 at 1122.180 kb on - strand, within MPMX19_01086
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 1,119,632 + +0.2 1,119,632 + +1.9 1,119,632 + +0.3 1,119,633 - -1.4 1,119,633 - -0.1 1,119,633 - -0.7 1,119,633 - -0.4 1,119,633 - -1.2 1,119,633 - -1.6 1,119,633 - +1.0 1,119,633 - -0.3 1,119,635 + -1.0 1,119,635 + -0.7 1,119,635 + -1.2 1,119,635 + -1.4 1,119,636 - +0.1 1,119,636 - -0.2 1,119,998 + MPMX19_01083 0.49 -0.1 1,119,998 + MPMX19_01083 0.49 -0.2 1,119,998 + MPMX19_01083 0.49 -0.5 1,119,998 + MPMX19_01083 0.49 +1.6 1,119,999 - MPMX19_01083 0.50 -0.1 1,119,999 - MPMX19_01083 0.50 -1.0 1,120,328 + MPMX19_01083 0.89 -0.1 1,120,328 + MPMX19_01083 0.89 +0.2 1,120,328 + MPMX19_01083 0.89 -0.4 1,120,328 + MPMX19_01083 0.89 -1.2 1,120,329 - MPMX19_01083 0.89 +0.8 1,120,329 - MPMX19_01083 0.89 +1.0 1,120,329 - MPMX19_01083 0.89 -1.4 1,120,329 - MPMX19_01083 0.89 +2.4 1,120,430 - -1.1 1,120,469 - -1.8 1,120,648 + MPMX19_01084 0.30 -1.0 1,120,648 + MPMX19_01084 0.30 -1.6 1,120,649 - MPMX19_01084 0.30 -1.4 1,120,649 - MPMX19_01084 0.30 -1.0 1,120,649 - MPMX19_01084 0.30 -1.7 1,120,649 - MPMX19_01084 0.30 -3.5 1,120,649 - MPMX19_01084 0.30 -2.6 1,120,801 + MPMX19_01084 0.50 -2.7 1,120,801 + MPMX19_01084 0.50 -0.7 1,120,801 + MPMX19_01084 0.50 -2.6 1,120,802 - MPMX19_01084 0.50 -1.2 1,120,802 - MPMX19_01084 0.50 -1.1 1,120,825 + MPMX19_01084 0.53 -1.4 1,120,825 + MPMX19_01084 0.53 -1.8 1,120,825 + MPMX19_01084 0.53 -2.2 1,121,110 + MPMX19_01084 0.89 -0.6 1,121,110 + MPMX19_01084 0.89 -1.0 1,121,111 - MPMX19_01084 0.89 -2.5 1,121,111 - MPMX19_01084 0.89 -0.4 1,121,111 - MPMX19_01084 0.89 -1.4 1,121,205 + +0.0 1,121,205 + -1.7 1,121,205 + +0.2 1,121,206 - -0.9 1,121,206 - -0.4 1,121,206 - -0.7 1,121,206 - +0.6 1,121,206 - -0.5 1,121,206 - -0.4 1,121,206 - -0.3 1,121,206 - -0.7 1,121,210 + -0.8 1,121,210 + -1.0 1,121,210 + -0.2 1,121,210 + -1.1 1,121,210 + -2.0 1,121,210 + -2.9 1,121,210 + -1.5 1,121,210 + -0.7 1,121,210 + -0.6 1,121,210 + +0.9 1,121,210 + -0.8 1,121,210 + -0.8 1,121,210 + -1.1 1,121,210 + -1.0 1,121,210 + -2.0 1,121,211 - -1.0 1,121,211 - -1.8 1,121,211 - +0.0 1,121,211 - -1.4 1,121,211 - -1.2 1,121,211 - -1.8 1,121,211 - -0.8 1,121,211 - -1.0 1,121,211 - +0.0 1,121,211 - -1.2 1,121,211 - -0.3 1,121,211 - +0.3 1,121,211 - -0.4 1,121,211 - +0.5 1,121,211 - -1.2 1,121,225 + -0.2 1,121,225 + -1.2 1,121,225 + -2.1 1,121,225 + +0.2 1,121,225 + -1.6 1,121,225 + -0.8 1,121,226 - +0.6 1,121,226 - -0.6 1,121,226 - +0.5 1,121,226 - +0.0 1,121,226 - -0.8 1,121,226 - -0.6 1,121,226 - -1.0 1,121,226 - -0.8 1,121,226 - -1.0 1,121,226 - -0.4 1,121,226 - -1.2 1,121,226 - +0.3 1,121,226 - -1.6 1,121,226 - -2.5 1,121,226 - +0.0 1,121,226 - -0.6 1,121,340 + MPMX19_01085 0.10 -0.8 1,121,340 + MPMX19_01085 0.10 -0.4 1,121,341 - MPMX19_01085 0.11 +0.0 1,121,341 - MPMX19_01085 0.11 -0.4 1,121,350 + MPMX19_01085 0.12 -0.4 1,121,350 + MPMX19_01085 0.12 -0.1 1,121,350 + MPMX19_01085 0.12 -1.2 1,121,350 + MPMX19_01085 0.12 -1.2 1,121,351 - MPMX19_01085 0.12 -0.6 1,121,351 - MPMX19_01085 0.12 -1.7 1,121,408 + MPMX19_01085 0.22 -1.1 1,121,451 - MPMX19_01085 0.30 -1.8 1,121,451 - MPMX19_01085 0.30 -1.0 1,121,585 + MPMX19_01085 0.54 -1.0 1,121,585 + MPMX19_01085 0.54 +0.8 1,121,585 + MPMX19_01085 0.54 -1.2 1,121,585 + MPMX19_01085 0.54 -1.4 1,121,586 - MPMX19_01085 0.54 -0.4 1,121,586 - MPMX19_01085 0.54 +0.8 1,121,586 - MPMX19_01085 0.54 +0.2 1,121,651 + MPMX19_01085 0.66 -0.1 1,121,651 + MPMX19_01085 0.66 -1.6 1,121,652 - MPMX19_01085 0.66 -0.4 1,121,704 + MPMX19_01085 0.75 -1.4 1,121,723 + MPMX19_01085 0.79 +0.1 1,121,723 + MPMX19_01085 0.79 -0.6 1,121,723 + MPMX19_01085 0.79 -1.2 1,121,723 + MPMX19_01085 0.79 -1.4 1,121,724 - MPMX19_01085 0.79 -0.3 1,121,724 - MPMX19_01085 0.79 -2.4 1,121,724 - MPMX19_01085 0.79 -0.5 1,121,750 + MPMX19_01085 0.83 -1.8 1,121,751 - MPMX19_01085 0.84 +0.2 1,121,792 + +0.9 1,121,792 + +1.1 1,121,792 + -0.6 1,121,792 + -1.8 1,121,792 + +0.5 1,121,793 - -0.5 1,121,793 - -0.3 1,121,810 + -1.2 1,121,810 + +0.3 1,121,810 + -0.3 1,121,810 + -1.0 1,121,810 + +1.1 1,121,810 + -2.8 1,121,810 + +0.6 1,121,810 + -0.6 1,121,810 + -0.7 1,121,810 + -0.2 1,121,810 + -2.8 1,121,810 + +0.5 1,121,810 + -0.1 1,121,810 + -0.7 1,121,811 - -0.7 1,121,811 - -1.4 1,121,811 - +1.3 1,121,811 - +0.2 1,121,811 - -1.2 1,121,811 - -1.8 1,121,811 - +0.4 1,121,811 - +0.0 1,121,811 - -0.7 1,121,811 - +2.2 1,121,811 - -1.3 1,121,811 - -1.4 1,121,811 - -0.4 1,121,811 - +0.2 1,121,811 - -0.7 1,121,811 - -0.7 1,121,812 + +0.9 1,121,812 + -1.7 1,121,812 + +0.6 1,121,812 + -1.0 1,121,813 - -1.0 1,121,813 - -0.1 1,121,813 - -1.2 1,121,813 - -1.4 1,121,813 - +0.8 1,121,813 - -1.3 1,121,813 - +0.7 1,121,813 - -1.4 1,121,813 - -1.1 1,121,813 - +1.0 1,121,813 - -1.7 1,121,854 + +0.0 1,121,855 - -0.4 1,121,855 - +0.0 1,121,855 - +0.2 1,121,855 - +0.8 1,121,855 - -0.3 1,121,912 + -0.1 1,121,912 + +0.9 1,121,912 + -1.6 1,121,912 + +0.0 1,121,912 + +0.4 1,121,912 + -2.7 1,121,912 + +0.4 1,121,913 - +0.6 1,121,913 - -2.8 1,121,913 - +0.0 1,121,913 - -1.0 1,121,913 - -2.3 1,121,913 - -0.5 1,121,913 - -2.2 1,122,179 + MPMX19_01086 0.48 -0.8 1,122,179 + MPMX19_01086 0.48 -0.7 1,122,179 + MPMX19_01086 0.48 -0.1 1,122,179 + MPMX19_01086 0.48 -1.4 1,122,180 - MPMX19_01086 0.48 +0.4 1,122,180 - MPMX19_01086 0.48 -1.3 1,122,180 - MPMX19_01086 0.48 -1.2 1,122,180 - MPMX19_01086 0.48 -0.7 1,122,180 - MPMX19_01086 0.48 -1.0 1,122,180 - MPMX19_01086 0.48 +0.0 1,122,180 - MPMX19_01086 0.48 -0.4 1,122,180 - MPMX19_01086 0.48 +1.6
Or see this region's nucleotide sequence