Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00712 and MPMX19_00713 are separated by 196 nucleotides MPMX19_00713 and MPMX19_00714 are separated by 87 nucleotides MPMX19_00714 and MPMX19_00715 are separated by 126 nucleotides
MPMX19_00712: MPMX19_00712 - hypothetical protein, at 735,089 to 735,562
_00712
MPMX19_00713: MPMX19_00713 - Pyridoxine/pyridoxamine 5'-phosphate oxidase, at 735,759 to 736,391
_00713
MPMX19_00714: MPMX19_00714 - Ferrous-iron efflux pump FieF, at 736,479 to 737,414
_00714
MPMX19_00715: MPMX19_00715 - hypothetical protein, at 737,541 to 739,052
_00715
Position (kb) 736
737
738 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.638 kb on + strand at 735.638 kb on + strand at 735.638 kb on + strand at 735.638 kb on + strand at 735.639 kb on - strand at 736.389 kb on + strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.430 kb on - strand at 736.430 kb on - strand at 736.430 kb on - strand at 736.430 kb on - strand at 736.443 kb on + strand at 736.443 kb on + strand at 736.540 kb on - strand at 736.540 kb on - strand at 736.540 kb on - strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.599 kb on + strand, within MPMX19_00714 at 736.599 kb on + strand, within MPMX19_00714 at 736.599 kb on + strand, within MPMX19_00714 at 736.599 kb on + strand, within MPMX19_00714 at 736.599 kb on + strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 737.457 kb on + strand at 737.458 kb on - strand at 737.467 kb on + strand at 737.526 kb on + strand at 737.531 kb on + strand at 737.531 kb on + strand at 737.532 kb on - strand at 737.532 kb on - strand at 737.532 kb on - strand at 737.536 kb on + strand at 737.592 kb on + strand at 737.606 kb on + strand at 737.606 kb on + strand at 737.607 kb on - strand at 737.607 kb on - strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.610 kb on - strand at 737.610 kb on - strand at 737.610 kb on - strand at 737.610 kb on - strand at 737.610 kb on - strand at 737.610 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 735,626 + +0.9 735,626 + -1.6 735,626 + -0.6 735,626 + -2.1 735,626 + -1.1 735,626 + -1.5 735,626 + -1.5 735,626 + -1.2 735,626 + -0.5 735,626 + -0.0 735,626 + +1.7 735,626 + +0.2 735,626 + -0.3 735,626 + +0.2 735,626 + -0.9 735,626 + -0.9 735,627 - -0.6 735,627 - -2.8 735,627 - +0.6 735,627 - -0.7 735,627 - +0.1 735,627 - -1.4 735,627 - -1.4 735,627 - -1.9 735,627 - -1.8 735,627 - -1.5 735,627 - -0.3 735,627 - -0.9 735,627 - -0.6 735,627 - +0.2 735,627 - -1.6 735,627 - -1.5 735,627 - -1.6 735,628 + +0.5 735,628 + +1.2 735,628 + -2.5 735,628 + -0.1 735,628 + +0.1 735,628 + -0.4 735,628 + -1.1 735,628 + -0.3 735,628 + +0.1 735,628 + +0.9 735,628 + +0.4 735,628 + -0.1 735,628 + -0.2 735,628 + +1.1 735,628 + -0.6 735,628 + -0.1 735,628 + -1.1 735,628 + -1.3 735,628 + -0.6 735,628 + +0.2 735,628 + +0.4 735,628 + +1.2 735,628 + +1.1 735,628 + -1.0 735,628 + -0.5 735,628 + +0.7 735,629 - -1.5 735,629 - -0.6 735,629 - +1.7 735,629 - +0.2 735,629 - -1.9 735,629 - -2.1 735,629 - -1.3 735,629 - +0.9 735,629 - -1.3 735,629 - -0.6 735,629 - -1.6 735,629 - -0.6 735,629 - -0.0 735,629 - +0.7 735,629 - +0.3 735,629 - -0.0 735,629 - -0.3 735,629 - +0.2 735,629 - -1.9 735,629 - -1.4 735,629 - -1.3 735,629 - -0.4 735,629 - -0.7 735,629 - +1.3 735,629 - -0.0 735,629 - -0.6 735,629 - -1.0 735,629 - -0.1 735,629 - +0.2 735,629 - -1.9 735,629 - +0.2 735,629 - -1.3 735,629 - -0.9 735,629 - -1.0 735,629 - -1.6 735,629 - -1.0 735,629 - -2.9 735,629 - -0.3 735,629 - -1.1 735,629 - +1.1 735,629 - -0.4 735,629 - -0.3 735,638 + -0.5 735,638 + +0.2 735,638 + +0.5 735,638 + -2.0 735,639 - -1.3 736,389 + -0.9 736,419 - -0.6 736,419 - +0.9 736,429 + +0.5 736,429 + +0.5 736,429 + -1.3 736,429 + +0.0 736,429 + +1.6 736,429 + +0.7 736,429 + -0.4 736,429 + -0.3 736,430 - -0.2 736,430 - -1.2 736,430 - -1.1 736,430 - -0.5 736,443 + -0.0 736,443 + -1.5 736,540 - -2.6 736,540 - -0.6 736,540 - -2.1 736,548 + -2.7 736,548 + -2.3 736,548 + -1.5 736,548 + -0.1 736,548 + -1.1 736,548 + -2.1 736,548 + -2.6 736,548 + -0.3 736,548 + +0.1 736,548 + +0.2 736,548 + -0.9 736,548 + -3.2 736,548 + -0.6 736,548 + -1.5 736,548 + -1.5 736,548 + -2.3 736,548 + +1.4 736,548 + -2.6 736,548 + -1.2 736,548 + -1.5 736,548 + -1.6 736,548 + -2.7 736,548 + -0.1 736,548 + -2.6 736,548 + -0.1 736,549 - -1.6 736,549 - -0.7 736,549 - -0.4 736,549 - -1.5 736,549 - -1.5 736,549 - -2.4 736,549 - -2.6 736,549 - -1.1 736,549 - -1.0 736,549 - -3.3 736,549 - -1.3 736,549 - -0.3 736,549 - -1.5 736,549 - -0.3 736,549 - -1.6 736,549 - -2.2 736,549 - -1.9 736,549 - -2.2 736,549 - -1.3 736,549 - -2.4 736,549 - -1.8 736,549 - -1.6 736,549 - -2.0 736,549 - -1.8 736,549 - +1.3 736,549 - -3.1 736,599 + MPMX19_00714 0.13 -1.1 736,599 + MPMX19_00714 0.13 -4.2 736,599 + MPMX19_00714 0.13 -1.5 736,599 + MPMX19_00714 0.13 -0.8 736,599 + MPMX19_00714 0.13 -1.3 736,600 - MPMX19_00714 0.13 -0.9 736,600 - MPMX19_00714 0.13 -1.1 736,600 - MPMX19_00714 0.13 -2.1 736,600 - MPMX19_00714 0.13 -1.5 736,600 - MPMX19_00714 0.13 +0.7 736,600 - MPMX19_00714 0.13 -0.9 736,600 - MPMX19_00714 0.13 +0.7 736,600 - MPMX19_00714 0.13 +0.5 736,968 + MPMX19_00714 0.52 -1.5 736,968 + MPMX19_00714 0.52 -1.1 736,968 + MPMX19_00714 0.52 -0.3 736,968 + MPMX19_00714 0.52 -1.8 736,968 + MPMX19_00714 0.52 -3.4 736,968 + MPMX19_00714 0.52 -0.6 736,968 + MPMX19_00714 0.52 -2.1 736,968 + MPMX19_00714 0.52 -1.3 736,968 + MPMX19_00714 0.52 -0.5 736,968 + MPMX19_00714 0.52 -0.5 736,969 - MPMX19_00714 0.52 -0.7 736,969 - MPMX19_00714 0.52 -1.4 736,969 - MPMX19_00714 0.52 -2.2 736,969 - MPMX19_00714 0.52 +0.5 736,969 - MPMX19_00714 0.52 -1.8 736,969 - MPMX19_00714 0.52 -1.4 736,969 - MPMX19_00714 0.52 -0.7 736,969 - MPMX19_00714 0.52 -1.6 736,969 - MPMX19_00714 0.52 -1.3 736,969 - MPMX19_00714 0.52 -1.2 736,969 - MPMX19_00714 0.52 -1.6 737,457 + -1.1 737,458 - -0.3 737,467 + -0.2 737,526 + -0.4 737,531 + +0.3 737,531 + -0.3 737,532 - -1.8 737,532 - -0.3 737,532 - -0.7 737,536 + -0.4 737,592 + -0.9 737,606 + -0.2 737,606 + -0.1 737,607 - +0.1 737,607 - -0.6 737,609 + +0.7 737,609 + -1.3 737,609 + -0.6 737,609 + +0.0 737,609 + -0.7 737,609 + -0.3 737,609 + -0.0 737,609 + -1.2 737,610 - +1.3 737,610 - -1.3 737,610 - -2.2 737,610 - +0.1 737,610 - -0.6 737,610 - +1.2
Or see this region's nucleotide sequence