Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00145 and MPMX19_00146 overlap by 4 nucleotides MPMX19_00146 and MPMX19_00147 are separated by 68 nucleotides MPMX19_00147 and MPMX19_00148 are separated by 89 nucleotides MPMX19_00148 and MPMX19_00149 overlap by 17 nucleotides
MPMX19_00145: MPMX19_00145 - DNA adenine methyltransferase YhdJ, at 156,832 to 157,623
_00145
MPMX19_00146: MPMX19_00146 - hypothetical protein, at 157,620 to 157,883
_00146
MPMX19_00147: MPMX19_00147 - hypothetical protein, at 157,952 to 158,698
_00147
MPMX19_00148: MPMX19_00148 - hypothetical protein, at 158,788 to 159,306
_00148
MPMX19_00149: MPMX19_00149 - hypothetical protein, at 159,290 to 159,763
_00149
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1
2 at 156.985 kb on + strand, within MPMX19_00145 at 156.986 kb on - strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.276 kb on + strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.277 kb on - strand, within MPMX19_00145 at 157.567 kb on + strand at 157.568 kb on - strand at 157.881 kb on + strand at 157.881 kb on + strand at 157.882 kb on - strand at 157.990 kb on - strand at 158.009 kb on + strand at 158.009 kb on + strand at 158.010 kb on - strand at 158.010 kb on - strand at 158.010 kb on - strand at 158.030 kb on + strand, within MPMX19_00147 at 158.123 kb on + strand, within MPMX19_00147 at 158.124 kb on - strand, within MPMX19_00147 at 158.124 kb on - strand, within MPMX19_00147 at 158.124 kb on - strand, within MPMX19_00147 at 158.124 kb on - strand, within MPMX19_00147 at 158.225 kb on + strand, within MPMX19_00147 at 158.226 kb on - strand, within MPMX19_00147 at 158.226 kb on - strand, within MPMX19_00147 at 158.226 kb on - strand, within MPMX19_00147 at 158.352 kb on - strand, within MPMX19_00147 at 158.420 kb on + strand, within MPMX19_00147 at 158.420 kb on + strand, within MPMX19_00147 at 158.420 kb on + strand, within MPMX19_00147 at 158.421 kb on - strand, within MPMX19_00147 at 158.421 kb on - strand, within MPMX19_00147 at 158.421 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.478 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.526 kb on - strand, within MPMX19_00147 at 158.582 kb on + strand, within MPMX19_00147 at 158.583 kb on - strand, within MPMX19_00147 at 158.583 kb on - strand, within MPMX19_00147 at 158.583 kb on - strand, within MPMX19_00147 at 158.731 kb on + strand at 158.731 kb on + strand at 158.732 kb on - strand at 158.732 kb on - strand at 158.732 kb on - strand at 158.732 kb on - strand at 158.787 kb on + strand at 158.787 kb on + strand at 158.787 kb on + strand at 158.787 kb on + strand at 158.787 kb on + strand at 158.788 kb on - strand at 158.788 kb on - strand at 158.788 kb on - strand at 158.788 kb on - strand at 158.788 kb on - strand at 158.788 kb on - strand at 158.788 kb on - strand at 158.986 kb on + strand, within MPMX19_00148 at 158.987 kb on - strand, within MPMX19_00148 at 158.987 kb on - strand, within MPMX19_00148 at 158.987 kb on - strand, within MPMX19_00148 at 159.344 kb on + strand, within MPMX19_00149 at 159.497 kb on + strand, within MPMX19_00149 at 159.497 kb on + strand, within MPMX19_00149 at 159.497 kb on + strand, within MPMX19_00149 at 159.498 kb on - strand, within MPMX19_00149 at 159.498 kb on - strand, within MPMX19_00149 at 159.498 kb on - strand, within MPMX19_00149 at 159.498 kb on - strand, within MPMX19_00149 at 159.498 kb on - strand, within MPMX19_00149 at 159.498 kb on - strand, within MPMX19_00149 at 159.498 kb on - strand, within MPMX19_00149 at 159.503 kb on + strand, within MPMX19_00149 at 159.503 kb on + strand, within MPMX19_00149 at 159.503 kb on + strand, within MPMX19_00149 at 159.582 kb on - strand, within MPMX19_00149 at 159.582 kb on - strand, within MPMX19_00149 at 159.611 kb on + strand, within MPMX19_00149 at 159.611 kb on + strand, within MPMX19_00149 at 159.612 kb on - strand, within MPMX19_00149 at 159.612 kb on - strand, within MPMX19_00149 at 159.612 kb on - strand, within MPMX19_00149
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 156,985 + MPMX19_00145 0.19 -0.4 156,986 - MPMX19_00145 0.19 +0.5 157,276 + MPMX19_00145 0.56 -0.1 157,276 + MPMX19_00145 0.56 -1.0 157,276 + MPMX19_00145 0.56 -1.8 157,276 + MPMX19_00145 0.56 +0.1 157,276 + MPMX19_00145 0.56 -1.2 157,276 + MPMX19_00145 0.56 -0.1 157,276 + MPMX19_00145 0.56 +0.2 157,276 + MPMX19_00145 0.56 -0.1 157,276 + MPMX19_00145 0.56 -1.6 157,276 + MPMX19_00145 0.56 +0.6 157,276 + MPMX19_00145 0.56 +0.5 157,276 + MPMX19_00145 0.56 -0.3 157,276 + MPMX19_00145 0.56 -1.8 157,276 + MPMX19_00145 0.56 -0.5 157,277 - MPMX19_00145 0.56 -0.2 157,277 - MPMX19_00145 0.56 +1.1 157,277 - MPMX19_00145 0.56 -1.9 157,277 - MPMX19_00145 0.56 -1.7 157,277 - MPMX19_00145 0.56 +0.8 157,277 - MPMX19_00145 0.56 +0.9 157,277 - MPMX19_00145 0.56 +0.4 157,277 - MPMX19_00145 0.56 +0.1 157,277 - MPMX19_00145 0.56 +0.5 157,277 - MPMX19_00145 0.56 -0.5 157,277 - MPMX19_00145 0.56 -1.8 157,277 - MPMX19_00145 0.56 -0.8 157,277 - MPMX19_00145 0.56 -1.5 157,277 - MPMX19_00145 0.56 -1.0 157,277 - MPMX19_00145 0.56 -0.4 157,567 + -0.9 157,568 - +0.5 157,881 + +0.1 157,881 + +0.2 157,882 - -0.4 157,990 - +0.2 158,009 + -0.8 158,009 + +1.0 158,010 - +0.0 158,010 - -0.1 158,010 - -1.4 158,030 + MPMX19_00147 0.10 -1.5 158,123 + MPMX19_00147 0.23 -1.1 158,124 - MPMX19_00147 0.23 -1.4 158,124 - MPMX19_00147 0.23 -1.8 158,124 - MPMX19_00147 0.23 -0.5 158,124 - MPMX19_00147 0.23 -0.3 158,225 + MPMX19_00147 0.37 -0.5 158,226 - MPMX19_00147 0.37 -0.2 158,226 - MPMX19_00147 0.37 -2.3 158,226 - MPMX19_00147 0.37 -1.1 158,352 - MPMX19_00147 0.54 -2.0 158,420 + MPMX19_00147 0.63 +0.6 158,420 + MPMX19_00147 0.63 -0.5 158,420 + MPMX19_00147 0.63 +0.0 158,421 - MPMX19_00147 0.63 -1.0 158,421 - MPMX19_00147 0.63 -1.4 158,421 - MPMX19_00147 0.63 +0.0 158,478 - MPMX19_00147 0.70 +0.3 158,478 - MPMX19_00147 0.70 -1.2 158,478 - MPMX19_00147 0.70 -1.2 158,478 - MPMX19_00147 0.70 +1.0 158,478 - MPMX19_00147 0.70 +0.6 158,478 - MPMX19_00147 0.70 +0.8 158,526 - MPMX19_00147 0.77 -0.2 158,526 - MPMX19_00147 0.77 -1.1 158,526 - MPMX19_00147 0.77 -0.6 158,526 - MPMX19_00147 0.77 -1.7 158,526 - MPMX19_00147 0.77 -0.4 158,526 - MPMX19_00147 0.77 -2.5 158,526 - MPMX19_00147 0.77 -0.1 158,526 - MPMX19_00147 0.77 -1.4 158,526 - MPMX19_00147 0.77 -0.2 158,526 - MPMX19_00147 0.77 -0.1 158,526 - MPMX19_00147 0.77 -0.1 158,526 - MPMX19_00147 0.77 -0.4 158,526 - MPMX19_00147 0.77 -0.5 158,526 - MPMX19_00147 0.77 -1.8 158,526 - MPMX19_00147 0.77 -0.4 158,582 + MPMX19_00147 0.84 -1.3 158,583 - MPMX19_00147 0.84 +0.6 158,583 - MPMX19_00147 0.84 +1.4 158,583 - MPMX19_00147 0.84 +0.1 158,731 + -1.4 158,731 + +1.1 158,732 - -0.9 158,732 - -2.5 158,732 - +1.4 158,732 - -0.4 158,787 + -0.2 158,787 + -0.0 158,787 + -1.9 158,787 + -2.1 158,787 + -1.9 158,788 - -0.1 158,788 - -1.0 158,788 - +1.8 158,788 - -2.0 158,788 - -0.2 158,788 - -1.9 158,788 - -1.0 158,986 + MPMX19_00148 0.38 -2.0 158,987 - MPMX19_00148 0.38 -1.6 158,987 - MPMX19_00148 0.38 +0.4 158,987 - MPMX19_00148 0.38 -0.6 159,344 + MPMX19_00149 0.11 -0.8 159,497 + MPMX19_00149 0.44 -1.7 159,497 + MPMX19_00149 0.44 -0.5 159,497 + MPMX19_00149 0.44 -0.3 159,498 - MPMX19_00149 0.44 -1.4 159,498 - MPMX19_00149 0.44 -0.8 159,498 - MPMX19_00149 0.44 +0.1 159,498 - MPMX19_00149 0.44 -1.6 159,498 - MPMX19_00149 0.44 +0.5 159,498 - MPMX19_00149 0.44 -0.5 159,498 - MPMX19_00149 0.44 -0.9 159,503 + MPMX19_00149 0.45 -0.5 159,503 + MPMX19_00149 0.45 -0.2 159,503 + MPMX19_00149 0.45 -1.4 159,582 - MPMX19_00149 0.62 -1.2 159,582 - MPMX19_00149 0.62 -0.5 159,611 + MPMX19_00149 0.68 -1.0 159,611 + MPMX19_00149 0.68 -0.9 159,612 - MPMX19_00149 0.68 +0.6 159,612 - MPMX19_00149 0.68 -2.0 159,612 - MPMX19_00149 0.68 +0.4
Or see this region's nucleotide sequence