Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00125 and MPMX19_00126 are separated by 299 nucleotides MPMX19_00126 and MPMX19_00127 overlap by 4 nucleotides MPMX19_00127 and MPMX19_00128 are separated by 1 nucleotides
MPMX19_00125: MPMX19_00125 - hypothetical protein, at 136,790 to 137,851
_00125
MPMX19_00126: MPMX19_00126 - hypothetical protein, at 138,151 to 138,471
_00126
MPMX19_00127: MPMX19_00127 - hypothetical protein, at 138,468 to 138,650
_00127
MPMX19_00128: MPMX19_00128 - hypothetical protein, at 138,652 to 139,101
_00128
Position (kb) 138
139
140 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 137.796 kb on + strand at 137.796 kb on + strand at 137.796 kb on + strand at 137.796 kb on + strand at 137.797 kb on - strand at 137.797 kb on - strand at 137.797 kb on - strand at 137.797 kb on - strand at 137.797 kb on - strand at 137.944 kb on + strand at 137.944 kb on + strand at 137.944 kb on + strand at 137.944 kb on + strand at 137.944 kb on + strand at 137.944 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.044 kb on + strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.045 kb on - strand at 138.083 kb on + strand at 138.083 kb on + strand at 138.084 kb on - strand at 138.084 kb on - strand at 138.084 kb on - strand at 138.084 kb on - strand at 138.084 kb on - strand at 138.230 kb on + strand, within MPMX19_00126 at 138.230 kb on + strand, within MPMX19_00126 at 138.230 kb on + strand, within MPMX19_00126 at 138.230 kb on + strand, within MPMX19_00126 at 138.231 kb on - strand, within MPMX19_00126 at 138.285 kb on - strand, within MPMX19_00126 at 138.308 kb on + strand, within MPMX19_00126 at 138.308 kb on + strand, within MPMX19_00126 at 138.308 kb on + strand, within MPMX19_00126 at 138.309 kb on - strand, within MPMX19_00126 at 138.511 kb on + strand, within MPMX19_00127 at 138.511 kb on + strand, within MPMX19_00127 at 138.741 kb on - strand, within MPMX19_00128 at 138.741 kb on - strand, within MPMX19_00128 at 138.741 kb on - strand, within MPMX19_00128 at 138.741 kb on - strand, within MPMX19_00128 at 138.741 kb on - strand, within MPMX19_00128 at 138.741 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.895 kb on - strand, within MPMX19_00128 at 138.908 kb on - strand, within MPMX19_00128 at 138.908 kb on - strand, within MPMX19_00128 at 138.908 kb on - strand, within MPMX19_00128 at 138.908 kb on - strand, within MPMX19_00128 at 138.908 kb on - strand, within MPMX19_00128 at 138.908 kb on - strand, within MPMX19_00128 at 138.908 kb on - strand, within MPMX19_00128 at 138.908 kb on - strand, within MPMX19_00128 at 138.908 kb on - strand, within MPMX19_00128 at 138.908 kb on - strand, within MPMX19_00128 at 138.908 kb on - strand, within MPMX19_00128 at 138.908 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 138.939 kb on - strand, within MPMX19_00128 at 139.046 kb on - strand, within MPMX19_00128 at 139.046 kb on - strand, within MPMX19_00128 at 139.046 kb on - strand, within MPMX19_00128 at 139.046 kb on - strand, within MPMX19_00128 at 139.046 kb on - strand, within MPMX19_00128 at 139.046 kb on - strand, within MPMX19_00128 at 139.650 kb on - strand at 139.675 kb on - strand at 139.675 kb on - strand at 139.675 kb on - strand at 139.879 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 137,796 + -0.5 137,796 + +0.4 137,796 + +1.6 137,796 + -0.8 137,797 - -2.1 137,797 - -1.6 137,797 - -1.5 137,797 - +1.1 137,797 - +0.8 137,944 + -2.4 137,944 + -0.5 137,944 + -0.1 137,944 + -0.3 137,944 + -0.7 137,944 + +0.5 138,044 + -0.8 138,044 + +0.0 138,044 + -1.7 138,044 + -1.1 138,044 + -2.3 138,044 + +1.1 138,044 + +0.2 138,044 + -1.9 138,044 + -0.4 138,044 + -1.9 138,044 + -2.2 138,044 + -0.9 138,044 + -0.9 138,044 + -1.2 138,044 + -2.4 138,044 + -0.1 138,044 + -1.6 138,044 + +0.8 138,044 + +0.3 138,044 + +0.4 138,044 + -2.1 138,045 - -1.3 138,045 - -2.0 138,045 - -1.9 138,045 - -2.9 138,045 - -0.3 138,045 - -0.4 138,045 - +1.0 138,045 - +0.8 138,045 - -1.3 138,045 - -0.5 138,045 - -2.0 138,045 - -2.8 138,045 - -3.0 138,045 - -1.0 138,045 - -0.0 138,045 - +0.8 138,045 - -0.9 138,045 - -1.0 138,045 - -0.2 138,045 - +0.4 138,045 - -0.4 138,045 - +0.0 138,045 - -0.4 138,045 - +0.2 138,045 - -0.5 138,045 - -1.0 138,045 - -1.7 138,045 - -0.1 138,045 - -0.5 138,045 - -1.9 138,045 - -0.9 138,045 - -0.9 138,045 - +1.0 138,083 + -1.2 138,083 + -1.0 138,084 - +1.1 138,084 - -0.8 138,084 - -3.6 138,084 - -0.8 138,084 - -1.2 138,230 + MPMX19_00126 0.25 -1.5 138,230 + MPMX19_00126 0.25 -2.3 138,230 + MPMX19_00126 0.25 -0.8 138,230 + MPMX19_00126 0.25 -1.2 138,231 - MPMX19_00126 0.25 -2.0 138,285 - MPMX19_00126 0.42 -0.8 138,308 + MPMX19_00126 0.49 -1.2 138,308 + MPMX19_00126 0.49 -3.4 138,308 + MPMX19_00126 0.49 -1.9 138,309 - MPMX19_00126 0.49 -1.2 138,511 + MPMX19_00127 0.23 -2.2 138,511 + MPMX19_00127 0.23 -0.5 138,741 - MPMX19_00128 0.20 -2.8 138,741 - MPMX19_00128 0.20 -1.5 138,741 - MPMX19_00128 0.20 -0.2 138,741 - MPMX19_00128 0.20 -1.2 138,741 - MPMX19_00128 0.20 -0.5 138,741 - MPMX19_00128 0.20 -0.8 138,895 - MPMX19_00128 0.54 -1.0 138,895 - MPMX19_00128 0.54 -2.6 138,895 - MPMX19_00128 0.54 -0.5 138,895 - MPMX19_00128 0.54 -2.9 138,895 - MPMX19_00128 0.54 +0.5 138,895 - MPMX19_00128 0.54 -2.4 138,895 - MPMX19_00128 0.54 -1.4 138,895 - MPMX19_00128 0.54 -1.6 138,895 - MPMX19_00128 0.54 -3.0 138,895 - MPMX19_00128 0.54 -1.7 138,895 - MPMX19_00128 0.54 -1.3 138,895 - MPMX19_00128 0.54 -1.0 138,895 - MPMX19_00128 0.54 -2.5 138,895 - MPMX19_00128 0.54 +0.5 138,895 - MPMX19_00128 0.54 -0.8 138,895 - MPMX19_00128 0.54 -2.2 138,895 - MPMX19_00128 0.54 -1.2 138,895 - MPMX19_00128 0.54 -0.4 138,895 - MPMX19_00128 0.54 -2.2 138,895 - MPMX19_00128 0.54 -0.2 138,895 - MPMX19_00128 0.54 +0.1 138,895 - MPMX19_00128 0.54 -2.8 138,895 - MPMX19_00128 0.54 -1.8 138,895 - MPMX19_00128 0.54 -1.2 138,895 - MPMX19_00128 0.54 +1.0 138,895 - MPMX19_00128 0.54 -1.1 138,895 - MPMX19_00128 0.54 -2.6 138,895 - MPMX19_00128 0.54 -2.5 138,895 - MPMX19_00128 0.54 -2.1 138,895 - MPMX19_00128 0.54 -1.0 138,895 - MPMX19_00128 0.54 -0.8 138,895 - MPMX19_00128 0.54 -2.6 138,895 - MPMX19_00128 0.54 -4.2 138,895 - MPMX19_00128 0.54 -0.6 138,895 - MPMX19_00128 0.54 +0.8 138,895 - MPMX19_00128 0.54 -2.1 138,895 - MPMX19_00128 0.54 -0.5 138,895 - MPMX19_00128 0.54 -2.0 138,895 - MPMX19_00128 0.54 -3.3 138,895 - MPMX19_00128 0.54 -1.2 138,895 - MPMX19_00128 0.54 -2.6 138,895 - MPMX19_00128 0.54 -3.2 138,895 - MPMX19_00128 0.54 -1.7 138,895 - MPMX19_00128 0.54 -3.9 138,895 - MPMX19_00128 0.54 -2.4 138,895 - MPMX19_00128 0.54 -0.4 138,895 - MPMX19_00128 0.54 +0.2 138,895 - MPMX19_00128 0.54 -0.4 138,895 - MPMX19_00128 0.54 -0.0 138,895 - MPMX19_00128 0.54 -1.0 138,895 - MPMX19_00128 0.54 -4.1 138,895 - MPMX19_00128 0.54 -0.8 138,895 - MPMX19_00128 0.54 -2.5 138,895 - MPMX19_00128 0.54 -3.4 138,895 - MPMX19_00128 0.54 -1.5 138,895 - MPMX19_00128 0.54 -1.2 138,895 - MPMX19_00128 0.54 +1.0 138,895 - MPMX19_00128 0.54 -3.5 138,895 - MPMX19_00128 0.54 -0.1 138,895 - MPMX19_00128 0.54 -1.2 138,895 - MPMX19_00128 0.54 +1.8 138,895 - MPMX19_00128 0.54 -1.1 138,895 - MPMX19_00128 0.54 -1.4 138,895 - MPMX19_00128 0.54 -0.5 138,895 - MPMX19_00128 0.54 -2.4 138,895 - MPMX19_00128 0.54 -0.4 138,895 - MPMX19_00128 0.54 -2.0 138,895 - MPMX19_00128 0.54 -0.5 138,908 - MPMX19_00128 0.57 +1.2 138,908 - MPMX19_00128 0.57 -2.5 138,908 - MPMX19_00128 0.57 -2.0 138,908 - MPMX19_00128 0.57 -1.4 138,908 - MPMX19_00128 0.57 -2.0 138,908 - MPMX19_00128 0.57 +0.2 138,908 - MPMX19_00128 0.57 +0.2 138,908 - MPMX19_00128 0.57 -1.4 138,908 - MPMX19_00128 0.57 -1.5 138,908 - MPMX19_00128 0.57 -3.8 138,908 - MPMX19_00128 0.57 +1.0 138,908 - MPMX19_00128 0.57 -2.9 138,939 - MPMX19_00128 0.64 -0.3 138,939 - MPMX19_00128 0.64 -2.7 138,939 - MPMX19_00128 0.64 -3.0 138,939 - MPMX19_00128 0.64 -0.5 138,939 - MPMX19_00128 0.64 -1.2 138,939 - MPMX19_00128 0.64 -1.3 138,939 - MPMX19_00128 0.64 -1.2 138,939 - MPMX19_00128 0.64 -2.4 138,939 - MPMX19_00128 0.64 -0.8 138,939 - MPMX19_00128 0.64 -2.5 138,939 - MPMX19_00128 0.64 -0.2 138,939 - MPMX19_00128 0.64 +1.8 138,939 - MPMX19_00128 0.64 -0.8 138,939 - MPMX19_00128 0.64 -1.5 138,939 - MPMX19_00128 0.64 -2.5 138,939 - MPMX19_00128 0.64 -1.1 138,939 - MPMX19_00128 0.64 -0.5 138,939 - MPMX19_00128 0.64 +0.2 138,939 - MPMX19_00128 0.64 -3.0 138,939 - MPMX19_00128 0.64 -0.8 138,939 - MPMX19_00128 0.64 -2.0 138,939 - MPMX19_00128 0.64 -1.1 138,939 - MPMX19_00128 0.64 -3.2 139,046 - MPMX19_00128 0.88 -0.2 139,046 - MPMX19_00128 0.88 -2.1 139,046 - MPMX19_00128 0.88 -3.3 139,046 - MPMX19_00128 0.88 -0.5 139,046 - MPMX19_00128 0.88 -0.6 139,046 - MPMX19_00128 0.88 -1.8 139,650 - -0.1 139,675 - -0.9 139,675 - -0.8 139,675 - +0.2 139,879 + -0.9
Or see this region's nucleotide sequence