Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04136

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
1,706	+		MIT1002_04135	0.69	-1.5
1,709	-		MIT1002_04135	0.69	+0.2
1,723	+		MIT1002_04135	0.70	+0.2
1,744	-		MIT1002_04135	0.72	-2.1
1,744	-		MIT1002_04135	0.72	-2.4
1,757	+		MIT1002_04135	0.73	-2.6
1,757	+		MIT1002_04135	0.73	-1.0
1,757	+		MIT1002_04135	0.73	+0.3
1,757	+		MIT1002_04135	0.73	-1.7
1,757	+		MIT1002_04135	0.73	-2.6
1,757	+		MIT1002_04135	0.73	-1.2
1,757	+		MIT1002_04135	0.73	-0.9
1,757	+		MIT1002_04135	0.73	-2.4
1,757	+		MIT1002_04135	0.73	-0.7
1,757	+		MIT1002_04135	0.73	-0.5
1,757	+		MIT1002_04135	0.73	-0.4
1,765	+		MIT1002_04135	0.74	-0.7
1,765	-		MIT1002_04135	0.74	-0.6
1,765	-		MIT1002_04135	0.74	-1.6
1,765	-		MIT1002_04135	0.74	-0.6
1,765	-		MIT1002_04135	0.74	+0.7
1,765	-		MIT1002_04135	0.74	-0.6
1,801	+		MIT1002_04135	0.77	+0.2
1,810	+		MIT1002_04135	0.78	-2.1
1,810	+		MIT1002_04135	0.78	+1.2
1,810	+		MIT1002_04135	0.78	-1.8
1,810	+		MIT1002_04135	0.78	-1.1
1,810	+		MIT1002_04135	0.78	-1.5
1,810	+		MIT1002_04135	0.78	-1.7
1,810	+		MIT1002_04135	0.78	-1.6
1,810	+		MIT1002_04135	0.78	-1.0
1,810	+		MIT1002_04135	0.78	-1.1
1,810	+		MIT1002_04135	0.78	-1.1
1,818	-		MIT1002_04135	0.79	-2.4
1,818	-		MIT1002_04135	0.79	-0.8
1,818	-		MIT1002_04135	0.79	-2.2
1,826	-		MIT1002_04135	0.80	+0.7
1,860	-		MIT1002_04135	0.83	+0.0
1,892	-		MIT1002_04135	0.86	-0.8
1,976	-				+0.5
2,009	+				-0.1
2,036	-				+1.1
2,048	+				+0.7
2,048	-				-0.3
2,048	-				+1.2
2,071	+				+0.8
2,071	+				-0.3
2,071	+				-0.5
2,071	+				-1.0
2,074	+				+0.4
2,074	+				-1.6
2,076	+				-0.1
2,079	-				+0.6
2,079	-				-0.4
2,079	-				+1.2
2,079	-				-0.8
2,081	-				+0.6
2,082	-				-2.4
2,082	-				+1.1
2,082	-				+0.0
2,082	-				-0.9
2,106	+				+0.0
2,116	+				-0.5
2,116	+				+0.4
2,116	+				-0.4
2,124	-				-1.4
2,124	-				+0.4
2,168	-				+0.5
2,196	+				+0.6
2,196	+				-1.5
2,196	+				-1.3
2,196	+				-1.5
2,198	+				+0.5
2,204	-				-0.0
2,204	-				-2.8
2,204	-				-1.7
2,252	+				-0.7
2,252	+				+1.5
2,252	+				-0.7
2,252	+				+2.2
2,252	+				-0.6
2,252	+				-1.2
2,252	+				+0.1
2,260	-				+2.3
2,260	-				-0.0
2,275	+				+1.1
2,275	+				-0.8
2,283	-				-1.0
2,297	-				+1.1
2,301	+				-1.5
2,447	-				+1.5
2,519	-				+0.4
2,521	+				+0.6
2,529	-				+0.4
2,529	-				-0.4
2,534	+				+0.4
2,537	-				+0.7
2,538	-				+0.2
2,539	+				-0.0
2,542	-				-2.6
2,547	-				+1.5
2,554	-				-0.0
2,569	+				-0.3
2,577	-				+3.5
2,608	+				+0.6
2,609	-				+0.5
2,616	+				+0.0
2,616	+				-1.3
2,616	-				+0.2
2,623	+				-1.6
2,623	+				+1.0
2,624	-				+1.7
2,624	-				+0.0
2,624	-				+0.2
2,630	-				+0.9
2,630	-				+3.5
2,631	-				+0.3
2,667	+				-0.4
2,744	-		MIT1002_04136	0.21	+0.3
2,748	+		MIT1002_04136	0.23	-1.3
2,756	-		MIT1002_04136	0.28	+1.0
2,783	+		MIT1002_04136	0.43	-3.5
2,783	-		MIT1002_04136	0.43	+0.2
2,791	+		MIT1002_04136	0.47	+1.3
2,793	-		MIT1002_04136	0.48	+1.1
2,793	-		MIT1002_04136	0.48	+2.0
2,798	-		MIT1002_04136	0.51	-0.3
2,812	+		MIT1002_04136	0.58	+0.3
2,812	+		MIT1002_04136	0.58	+0.1
2,812	+		MIT1002_04136	0.58	+0.4
2,817	+		MIT1002_04136	0.61	-1.6
2,820	-		MIT1002_04136	0.63	-0.8
2,825	-		MIT1002_04136	0.66	-0.7
2,854	+		MIT1002_04136	0.81	+1.2
2,854	+		MIT1002_04136	0.81	+1.3
2,854	+		MIT1002_04136	0.81	+0.1
2,854	+		MIT1002_04136	0.81	-0.6
2,862	-		MIT1002_04136	0.86	+0.6
2,862	-		MIT1002_04136	0.86	-0.2
2,862	-		MIT1002_04136	0.86	-2.1
2,862	-		MIT1002_04136	0.86	-0.3
2,862	-		MIT1002_04136	0.86	-1.1
2,862	-		MIT1002_04136	0.86	-1.0
2,922	+				-0.8
2,936	+				-0.3
2,936	+				+1.1
2,944	-				-0.6
2,944	-				+0.6
2,944	-				+1.6
2,972	+				-2.9
2,985	-				+1.0
2,985	-				-0.2
2,985	-				+0.1
2,985	-				+0.7
2,985	-				+1.0
2,985	-				+0.6
2,985	-				+2.1
3,018	+				+0.1
3,018	+				+0.2
3,018	+				-3.0
3,035	+				+1.0
3,059	+				-0.4
3,064	+				-2.0
3,064	+				-1.0
3,122	-				-0.3
3,125	-				+0.1
3,142	+				+0.6
3,186	+				-0.9
3,187	-				-0.1
3,196	-				+1.1
3,202	-				-0.1
3,217	+				-1.1
3,217	+				-0.8
3,225	-				-0.5
3,225	-				-0.9
3,225	-				-2.8
3,225	-				-0.2
3,230	-				-0.2
3,257	-				-2.0
3,325	-				+0.0
3,333	-		MIT1002_04137	0.10	-1.0
3,340	-		MIT1002_04137	0.11	-1.9
3,401	+		MIT1002_04137	0.19	-1.3
3,437	+		MIT1002_04137	0.24	-0.5
3,437	+		MIT1002_04137	0.24	-0.2
3,437	-		MIT1002_04137	0.24	+1.5
3,445	-		MIT1002_04137	0.25	-0.1
3,445	-		MIT1002_04137	0.25	+0.3
3,445	-		MIT1002_04137	0.25	+1.2
3,452	+		MIT1002_04137	0.26	-0.2
3,455	-		MIT1002_04137	0.27	-2.0
3,522	+		MIT1002_04137	0.36	+1.5
3,522	+		MIT1002_04137	0.36	-2.3
3,530	-		MIT1002_04137	0.37	+0.2
3,557	+		MIT1002_04137	0.41	+0.7
3,583	-		MIT1002_04137	0.44	-2.4
3,583	-		MIT1002_04137	0.44	+0.5
3,634	+		MIT1002_04137	0.51	-1.1
3,634	+		MIT1002_04137	0.51	+0.8
3,634	+		MIT1002_04137	0.51	+0.3
3,634	+		MIT1002_04137	0.51	+0.9
3,634	+		MIT1002_04137	0.51	-0.5
3,642	-		MIT1002_04137	0.52	+0.8
3,642	-		MIT1002_04137	0.52	-1.3
3,661	-		MIT1002_04137	0.55	-2.3
3,663	-		MIT1002_04137	0.55	-0.4
3,702	+		MIT1002_04137	0.60	-1.6
3,710	+		MIT1002_04137	0.61	-1.3
3,757	-		MIT1002_04137	0.68	+2.0
3,801	+		MIT1002_04137	0.74	+1.0
3,801	+		MIT1002_04137	0.74	-0.5
3,801	+		MIT1002_04137	0.74	+1.7
3,801	+		MIT1002_04137	0.74	+0.3
3,809	+		MIT1002_04137	0.75	-1.0
3,809	+		MIT1002_04137	0.75	-2.8
3,809	-		MIT1002_04137	0.75	-0.2
3,817	+		MIT1002_04137	0.76	+0.6
3,817	-		MIT1002_04137	0.76	+0.2
3,817	-		MIT1002_04137	0.76	+3.5
3,817	-		MIT1002_04137	0.76	-1.2
3,852	+		MIT1002_04137	0.81	+1.5