Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04061

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
4,562,136	+		MIT1002_04060	0.45	+1.0
4,562,136	+		MIT1002_04060	0.45	-0.7
4,562,264	+		MIT1002_04060	0.54	+0.4
4,562,272	-		MIT1002_04060	0.55	-0.8
4,562,280	-		MIT1002_04060	0.55	+0.6
4,562,382	-		MIT1002_04060	0.63	-1.9
4,562,382	-		MIT1002_04060	0.63	-2.3
4,562,418	+		MIT1002_04060	0.65	-0.9
4,562,437	-		MIT1002_04060	0.67	-2.0
4,562,451	+		MIT1002_04060	0.68	-0.6
4,562,516	-		MIT1002_04060	0.72	-1.4
4,562,547	-		MIT1002_04060	0.75	-2.0
4,562,549	-		MIT1002_04060	0.75	-1.2
4,562,552	-		MIT1002_04060	0.75	-1.1
4,562,570	-		MIT1002_04060	0.76	+0.4
4,562,654	+		MIT1002_04060	0.83	-1.1
4,562,802	-				+0.0
4,562,909	-				-0.6
4,563,019	-				-0.1
4,563,028	-				+0.7
4,563,042	+				-1.0
4,563,077	+				-3.1
4,563,085	-				-0.9
4,563,085	-				+0.3
4,563,085	-				-2.5
4,563,090	+				+1.9
4,563,098	-		MIT1002_04061	0.10	+0.4
4,563,156	-		MIT1002_04061	0.29	+0.1
4,563,181	-		MIT1002_04061	0.37	-0.3
4,563,284	-		MIT1002_04061	0.71	+0.4
4,563,292	+		MIT1002_04061	0.73	+1.0
4,563,293	+		MIT1002_04061	0.73	-0.3
4,563,314	-		MIT1002_04061	0.80	-0.1
4,563,352	-				+0.6
4,563,394	+				+2.5
4,563,449	-				-1.6
4,563,524	+		MIT1002_04062	0.15	+0.4
4,563,542	+		MIT1002_04062	0.20	-0.9
4,563,568	+		MIT1002_04062	0.26	-1.3
4,563,576	-		MIT1002_04062	0.28	-0.7
4,563,576	-		MIT1002_04062	0.28	-0.4
4,563,576	-		MIT1002_04062	0.28	-0.2
4,563,578	-		MIT1002_04062	0.29	-2.8
4,563,629	+		MIT1002_04062	0.42	-0.8
4,563,644	-		MIT1002_04062	0.46	+0.3
4,563,644	-		MIT1002_04062	0.46	-0.4
4,563,741	+		MIT1002_04062	0.70	+0.7
4,563,767	+		MIT1002_04062	0.77	-2.1
4,563,767	+		MIT1002_04062	0.77	+0.0
4,563,802	-		MIT1002_04062	0.86	-0.5
4,563,810	-		MIT1002_04062	0.88	-0.6
4,563,826	+				+0.4
4,563,830	-				+1.0
4,563,830	-				+0.7
4,563,832	+				+0.2
4,563,850	-				-2.1
4,563,982	-				+1.7
4,563,982	-				-0.6
4,564,275	+				-0.8
4,564,277	+				-0.9
4,564,277	+				-0.6