Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03999 and MIT1002_04000 are separated by 20 nucleotides MIT1002_04000 and MIT1002_04001 overlap by 14 nucleotides MIT1002_04001 and MIT1002_04002 are separated by 118 nucleotides MIT1002_04002 and MIT1002_04003 are separated by 178 nucleotides
MIT1002_03999: MIT1002_03999 - putative hydrolase, at 4,486,628 to 4,487,662
_03999
MIT1002_04000: MIT1002_04000 - hypothetical protein, at 4,487,683 to 4,488,186
_04000
MIT1002_04001: MIT1002_04001 - putative ABC transporter ATP-binding protein YheS, at 4,488,173 to 4,490,125
_04001
MIT1002_04002: MIT1002_04002 - hypothetical protein, at 4,490,244 to 4,490,450
_04002
MIT1002_04003: MIT1002_04003 - AsmA family protein, at 4,490,629 to 4,491,741
_04003
Position (kb) 4488
4489
4490
4491 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4487.215 kb on + strand, within MIT1002_03999 at 4487.384 kb on + strand, within MIT1002_03999 at 4487.416 kb on + strand, within MIT1002_03999 at 4487.424 kb on - strand, within MIT1002_03999 at 4487.428 kb on + strand, within MIT1002_03999 at 4487.525 kb on - strand, within MIT1002_03999 at 4487.569 kb on + strand at 4487.569 kb on + strand at 4487.577 kb on - strand at 4487.584 kb on - strand at 4487.603 kb on + strand at 4487.611 kb on - strand at 4487.611 kb on - strand at 4487.611 kb on - strand at 4487.619 kb on - strand at 4487.619 kb on - strand at 4487.619 kb on - strand at 4487.619 kb on - strand at 4487.700 kb on + strand at 4487.707 kb on + strand at 4487.708 kb on - strand at 4487.806 kb on - strand, within MIT1002_04000 at 4487.874 kb on + strand, within MIT1002_04000 at 4487.881 kb on + strand, within MIT1002_04000 at 4487.899 kb on + strand, within MIT1002_04000 at 4487.907 kb on - strand, within MIT1002_04000 at 4487.907 kb on - strand, within MIT1002_04000 at 4488.002 kb on + strand, within MIT1002_04000 at 4488.002 kb on + strand, within MIT1002_04000 at 4488.002 kb on + strand, within MIT1002_04000 at 4488.002 kb on + strand, within MIT1002_04000 at 4488.002 kb on + strand, within MIT1002_04000 at 4488.002 kb on + strand, within MIT1002_04000 at 4488.002 kb on + strand, within MIT1002_04000 at 4488.002 kb on + strand, within MIT1002_04000 at 4488.002 kb on + strand, within MIT1002_04000 at 4488.002 kb on + strand, within MIT1002_04000 at 4488.002 kb on + strand, within MIT1002_04000 at 4488.010 kb on - strand, within MIT1002_04000 at 4488.010 kb on - strand, within MIT1002_04000 at 4488.010 kb on - strand, within MIT1002_04000 at 4488.010 kb on - strand, within MIT1002_04000 at 4488.010 kb on - strand, within MIT1002_04000 at 4488.010 kb on - strand, within MIT1002_04000 at 4488.010 kb on - strand, within MIT1002_04000 at 4488.010 kb on - strand, within MIT1002_04000 at 4488.010 kb on - strand, within MIT1002_04000 at 4488.010 kb on - strand, within MIT1002_04000 at 4488.010 kb on - strand, within MIT1002_04000 at 4488.010 kb on - strand, within MIT1002_04000 at 4488.078 kb on + strand, within MIT1002_04000 at 4488.148 kb on - strand at 4488.196 kb on - strand at 4488.196 kb on - strand at 4488.196 kb on - strand at 4488.196 kb on - strand at 4488.211 kb on + strand at 4488.242 kb on + strand at 4488.269 kb on - strand at 4488.291 kb on + strand at 4488.299 kb on - strand at 4488.299 kb on - strand at 4488.353 kb on - strand at 4488.356 kb on + strand at 4488.369 kb on - strand, within MIT1002_04001 at 4488.371 kb on + strand, within MIT1002_04001 at 4488.426 kb on - strand, within MIT1002_04001 at 4488.426 kb on - strand, within MIT1002_04001 at 4488.483 kb on + strand, within MIT1002_04001 at 4488.483 kb on + strand, within MIT1002_04001 at 4488.483 kb on + strand, within MIT1002_04001 at 4488.491 kb on - strand, within MIT1002_04001 at 4488.491 kb on - strand, within MIT1002_04001 at 4488.531 kb on + strand, within MIT1002_04001 at 4488.539 kb on - strand, within MIT1002_04001 at 4488.539 kb on - strand, within MIT1002_04001 at 4488.539 kb on - strand, within MIT1002_04001 at 4488.539 kb on - strand, within MIT1002_04001 at 4488.597 kb on + strand, within MIT1002_04001 at 4488.613 kb on + strand, within MIT1002_04001 at 4488.748 kb on + strand, within MIT1002_04001 at 4488.756 kb on + strand, within MIT1002_04001 at 4488.806 kb on + strand, within MIT1002_04001 at 4488.825 kb on - strand, within MIT1002_04001 at 4488.836 kb on - strand, within MIT1002_04001 at 4488.864 kb on + strand, within MIT1002_04001 at 4488.966 kb on - strand, within MIT1002_04001 at 4488.974 kb on - strand, within MIT1002_04001 at 4489.025 kb on + strand, within MIT1002_04001 at 4489.049 kb on + strand, within MIT1002_04001 at 4489.061 kb on + strand, within MIT1002_04001 at 4489.065 kb on + strand, within MIT1002_04001 at 4489.071 kb on + strand, within MIT1002_04001 at 4489.071 kb on + strand, within MIT1002_04001 at 4489.071 kb on + strand, within MIT1002_04001 at 4489.071 kb on + strand, within MIT1002_04001 at 4489.071 kb on + strand, within MIT1002_04001 at 4489.071 kb on + strand, within MIT1002_04001 at 4489.079 kb on - strand, within MIT1002_04001 at 4489.079 kb on - strand, within MIT1002_04001 at 4489.099 kb on + strand, within MIT1002_04001 at 4489.139 kb on + strand, within MIT1002_04001 at 4489.144 kb on + strand, within MIT1002_04001 at 4489.158 kb on + strand, within MIT1002_04001 at 4489.194 kb on + strand, within MIT1002_04001 at 4489.194 kb on + strand, within MIT1002_04001 at 4489.202 kb on - strand, within MIT1002_04001 at 4489.202 kb on - strand, within MIT1002_04001 at 4489.202 kb on - strand, within MIT1002_04001 at 4489.308 kb on + strand, within MIT1002_04001 at 4489.308 kb on + strand, within MIT1002_04001 at 4489.310 kb on - strand, within MIT1002_04001 at 4489.331 kb on - strand, within MIT1002_04001 at 4489.360 kb on - strand, within MIT1002_04001 at 4489.425 kb on - strand, within MIT1002_04001 at 4489.449 kb on + strand, within MIT1002_04001 at 4489.465 kb on + strand, within MIT1002_04001 at 4489.465 kb on + strand, within MIT1002_04001 at 4489.465 kb on + strand, within MIT1002_04001 at 4489.473 kb on - strand, within MIT1002_04001 at 4489.473 kb on - strand, within MIT1002_04001 at 4489.486 kb on + strand, within MIT1002_04001 at 4489.514 kb on - strand, within MIT1002_04001 at 4489.521 kb on + strand, within MIT1002_04001 at 4489.523 kb on + strand, within MIT1002_04001 at 4489.544 kb on + strand, within MIT1002_04001 at 4489.600 kb on - strand, within MIT1002_04001 at 4489.618 kb on + strand, within MIT1002_04001 at 4489.626 kb on + strand, within MIT1002_04001 at 4489.634 kb on - strand, within MIT1002_04001 at 4489.634 kb on - strand, within MIT1002_04001 at 4489.656 kb on - strand, within MIT1002_04001 at 4489.723 kb on - strand, within MIT1002_04001 at 4489.798 kb on + strand, within MIT1002_04001 at 4489.806 kb on - strand, within MIT1002_04001 at 4489.874 kb on - strand, within MIT1002_04001 at 4489.880 kb on + strand, within MIT1002_04001 at 4489.880 kb on + strand, within MIT1002_04001 at 4489.881 kb on - strand, within MIT1002_04001 at 4489.888 kb on - strand, within MIT1002_04001 at 4489.892 kb on - strand, within MIT1002_04001 at 4489.905 kb on + strand, within MIT1002_04001 at 4489.980 kb on + strand at 4489.980 kb on + strand at 4489.980 kb on + strand at 4489.988 kb on - strand at 4489.988 kb on - strand at 4489.988 kb on - strand at 4489.988 kb on - strand at 4489.988 kb on - strand at 4489.988 kb on - strand at 4490.005 kb on + strand at 4490.030 kb on - strand at 4490.037 kb on + strand at 4490.045 kb on - strand at 4490.116 kb on + strand at 4490.116 kb on + strand at 4490.185 kb on - strand at 4490.187 kb on + strand at 4490.235 kb on + strand at 4490.236 kb on - strand at 4490.243 kb on - strand at 4490.243 kb on - strand at 4490.243 kb on - strand at 4490.286 kb on - strand, within MIT1002_04002 at 4490.351 kb on - strand, within MIT1002_04002 at 4490.376 kb on + strand, within MIT1002_04002 at 4490.463 kb on - strand at 4490.481 kb on + strand at 4490.489 kb on - strand at 4490.489 kb on - strand at 4490.491 kb on + strand at 4490.491 kb on + strand at 4490.491 kb on + strand at 4490.491 kb on + strand at 4490.491 kb on + strand at 4490.499 kb on - strand at 4490.499 kb on - strand at 4490.499 kb on - strand at 4490.499 kb on - strand at 4490.507 kb on - strand at 4490.556 kb on + strand at 4490.599 kb on - strand at 4490.714 kb on - strand at 4490.727 kb on + strand at 4490.727 kb on - strand at 4490.727 kb on - strand at 4490.735 kb on - strand at 4490.810 kb on + strand, within MIT1002_04003 at 4490.851 kb on - strand, within MIT1002_04003 at 4490.862 kb on + strand, within MIT1002_04003 at 4490.862 kb on + strand, within MIT1002_04003 at 4490.870 kb on - strand, within MIT1002_04003 at 4490.870 kb on - strand, within MIT1002_04003 at 4490.870 kb on - strand, within MIT1002_04003 at 4490.870 kb on - strand, within MIT1002_04003 at 4490.870 kb on - strand, within MIT1002_04003 at 4490.870 kb on - strand, within MIT1002_04003 at 4490.870 kb on - strand, within MIT1002_04003 at 4490.870 kb on - strand, within MIT1002_04003 at 4490.870 kb on - strand, within MIT1002_04003 at 4490.967 kb on + strand, within MIT1002_04003 at 4490.972 kb on + strand, within MIT1002_04003 at 4490.989 kb on - strand, within MIT1002_04003 at 4490.989 kb on - strand, within MIT1002_04003 at 4491.009 kb on - strand, within MIT1002_04003 at 4491.084 kb on + strand, within MIT1002_04003 at 4491.092 kb on - strand, within MIT1002_04003 at 4491.106 kb on + strand, within MIT1002_04003
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5 remove 4,487,215 + MIT1002_03999 0.57 -1.2 4,487,384 + MIT1002_03999 0.73 +0.0 4,487,416 + MIT1002_03999 0.76 +0.3 4,487,424 - MIT1002_03999 0.77 -1.8 4,487,428 + MIT1002_03999 0.77 -0.1 4,487,525 - MIT1002_03999 0.87 +1.0 4,487,569 + +2.5 4,487,569 + +1.2 4,487,577 - +0.8 4,487,584 - +0.8 4,487,603 + -0.8 4,487,611 - -0.1 4,487,611 - +1.3 4,487,611 - +0.4 4,487,619 - -0.3 4,487,619 - -0.1 4,487,619 - +0.4 4,487,619 - -0.7 4,487,700 + -0.7 4,487,707 + +2.2 4,487,708 - -0.7 4,487,806 - MIT1002_04000 0.24 -0.2 4,487,874 + MIT1002_04000 0.38 -1.5 4,487,881 + MIT1002_04000 0.39 -0.7 4,487,899 + MIT1002_04000 0.43 +1.0 4,487,907 - MIT1002_04000 0.44 +0.2 4,487,907 - MIT1002_04000 0.44 +1.1 4,488,002 + MIT1002_04000 0.63 +0.1 4,488,002 + MIT1002_04000 0.63 +1.0 4,488,002 + MIT1002_04000 0.63 -0.9 4,488,002 + MIT1002_04000 0.63 -0.4 4,488,002 + MIT1002_04000 0.63 +0.4 4,488,002 + MIT1002_04000 0.63 +2.7 4,488,002 + MIT1002_04000 0.63 +1.5 4,488,002 + MIT1002_04000 0.63 +0.3 4,488,002 + MIT1002_04000 0.63 -0.2 4,488,002 + MIT1002_04000 0.63 -0.2 4,488,002 + MIT1002_04000 0.63 +1.5 4,488,010 - MIT1002_04000 0.65 -0.5 4,488,010 - MIT1002_04000 0.65 -0.7 4,488,010 - MIT1002_04000 0.65 -0.3 4,488,010 - MIT1002_04000 0.65 +1.2 4,488,010 - MIT1002_04000 0.65 -0.2 4,488,010 - MIT1002_04000 0.65 -0.3 4,488,010 - MIT1002_04000 0.65 +0.6 4,488,010 - MIT1002_04000 0.65 -0.6 4,488,010 - MIT1002_04000 0.65 +0.2 4,488,010 - MIT1002_04000 0.65 +1.0 4,488,010 - MIT1002_04000 0.65 -2.7 4,488,010 - MIT1002_04000 0.65 -1.1 4,488,078 + MIT1002_04000 0.78 +0.4 4,488,148 - -0.1 4,488,196 - +0.0 4,488,196 - -0.9 4,488,196 - -0.1 4,488,196 - -1.4 4,488,211 + -0.4 4,488,242 + -2.9 4,488,269 - -0.8 4,488,291 + +0.9 4,488,299 - +0.0 4,488,299 - +1.2 4,488,353 - -1.4 4,488,356 + +0.0 4,488,369 - MIT1002_04001 0.10 -1.1 4,488,371 + MIT1002_04001 0.10 -0.8 4,488,426 - MIT1002_04001 0.13 +1.7 4,488,426 - MIT1002_04001 0.13 -0.6 4,488,483 + MIT1002_04001 0.16 -0.8 4,488,483 + MIT1002_04001 0.16 +1.7 4,488,483 + MIT1002_04001 0.16 -0.7 4,488,491 - MIT1002_04001 0.16 -0.1 4,488,491 - MIT1002_04001 0.16 -0.8 4,488,531 + MIT1002_04001 0.18 -1.1 4,488,539 - MIT1002_04001 0.19 -0.9 4,488,539 - MIT1002_04001 0.19 -1.0 4,488,539 - MIT1002_04001 0.19 -0.3 4,488,539 - MIT1002_04001 0.19 +0.1 4,488,597 + MIT1002_04001 0.22 +0.7 4,488,613 + MIT1002_04001 0.23 -0.6 4,488,748 + MIT1002_04001 0.29 -2.0 4,488,756 + MIT1002_04001 0.30 +0.4 4,488,806 + MIT1002_04001 0.32 -2.0 4,488,825 - MIT1002_04001 0.33 -2.4 4,488,836 - MIT1002_04001 0.34 -0.3 4,488,864 + MIT1002_04001 0.35 -1.0 4,488,966 - MIT1002_04001 0.41 +0.4 4,488,974 - MIT1002_04001 0.41 -1.0 4,489,025 + MIT1002_04001 0.44 +1.1 4,489,049 + MIT1002_04001 0.45 -1.3 4,489,061 + MIT1002_04001 0.45 +0.1 4,489,065 + MIT1002_04001 0.46 +3.0 4,489,071 + MIT1002_04001 0.46 -0.3 4,489,071 + MIT1002_04001 0.46 +1.6 4,489,071 + MIT1002_04001 0.46 -0.7 4,489,071 + MIT1002_04001 0.46 -0.3 4,489,071 + MIT1002_04001 0.46 -1.1 4,489,071 + MIT1002_04001 0.46 -0.6 4,489,079 - MIT1002_04001 0.46 +1.5 4,489,079 - MIT1002_04001 0.46 -0.5 4,489,099 + MIT1002_04001 0.47 -1.1 4,489,139 + MIT1002_04001 0.49 -1.1 4,489,144 + MIT1002_04001 0.50 -0.1 4,489,158 + MIT1002_04001 0.50 +3.0 4,489,194 + MIT1002_04001 0.52 -1.8 4,489,194 + MIT1002_04001 0.52 -0.2 4,489,202 - MIT1002_04001 0.53 +0.1 4,489,202 - MIT1002_04001 0.53 -0.5 4,489,202 - MIT1002_04001 0.53 +0.6 4,489,308 + MIT1002_04001 0.58 +0.9 4,489,308 + MIT1002_04001 0.58 -3.0 4,489,310 - MIT1002_04001 0.58 -0.9 4,489,331 - MIT1002_04001 0.59 -1.3 4,489,360 - MIT1002_04001 0.61 +0.2 4,489,425 - MIT1002_04001 0.64 -0.6 4,489,449 + MIT1002_04001 0.65 -0.6 4,489,465 + MIT1002_04001 0.66 -1.4 4,489,465 + MIT1002_04001 0.66 +0.4 4,489,465 + MIT1002_04001 0.66 -2.3 4,489,473 - MIT1002_04001 0.67 -0.2 4,489,473 - MIT1002_04001 0.67 -0.6 4,489,486 + MIT1002_04001 0.67 -0.7 4,489,514 - MIT1002_04001 0.69 -0.6 4,489,521 + MIT1002_04001 0.69 -0.1 4,489,523 + MIT1002_04001 0.69 -0.6 4,489,544 + MIT1002_04001 0.70 -0.3 4,489,600 - MIT1002_04001 0.73 +3.5 4,489,618 + MIT1002_04001 0.74 -0.0 4,489,626 + MIT1002_04001 0.74 -0.4 4,489,634 - MIT1002_04001 0.75 +1.2 4,489,634 - MIT1002_04001 0.75 +0.3 4,489,656 - MIT1002_04001 0.76 -0.9 4,489,723 - MIT1002_04001 0.79 -2.6 4,489,798 + MIT1002_04001 0.83 +0.2 4,489,806 - MIT1002_04001 0.84 -0.3 4,489,874 - MIT1002_04001 0.87 -0.9 4,489,880 + MIT1002_04001 0.87 -0.1 4,489,880 + MIT1002_04001 0.87 -0.2 4,489,881 - MIT1002_04001 0.87 +0.4 4,489,888 - MIT1002_04001 0.88 -0.9 4,489,892 - MIT1002_04001 0.88 -0.5 4,489,905 + MIT1002_04001 0.89 -0.0 4,489,980 + +0.7 4,489,980 + -0.1 4,489,980 + +0.4 4,489,988 - +0.7 4,489,988 - -0.2 4,489,988 - +0.6 4,489,988 - +0.4 4,489,988 - +0.9 4,489,988 - -1.1 4,490,005 + -0.9 4,490,030 - -1.7 4,490,037 + -0.5 4,490,045 - -0.0 4,490,116 + +1.0 4,490,116 + -0.8 4,490,185 - -0.8 4,490,187 + -1.1 4,490,235 + +0.8 4,490,236 - -1.1 4,490,243 - +0.6 4,490,243 - -0.4 4,490,243 - -1.2 4,490,286 - MIT1002_04002 0.20 -1.7 4,490,351 - MIT1002_04002 0.52 -1.1 4,490,376 + MIT1002_04002 0.64 -1.1 4,490,463 - -0.1 4,490,481 + +2.5 4,490,489 - -0.9 4,490,489 - +1.1 4,490,491 + -0.4 4,490,491 + +0.9 4,490,491 + -0.9 4,490,491 + +0.9 4,490,491 + +1.0 4,490,499 - -0.8 4,490,499 - +1.3 4,490,499 - +1.6 4,490,499 - -1.5 4,490,507 - +0.5 4,490,556 + -1.1 4,490,599 - -0.5 4,490,714 - +0.3 4,490,727 + +0.4 4,490,727 - +0.3 4,490,727 - +0.1 4,490,735 - -0.1 4,490,810 + MIT1002_04003 0.16 +2.8 4,490,851 - MIT1002_04003 0.20 -1.6 4,490,862 + MIT1002_04003 0.21 -1.2 4,490,862 + MIT1002_04003 0.21 -0.5 4,490,870 - MIT1002_04003 0.22 -0.4 4,490,870 - MIT1002_04003 0.22 -0.2 4,490,870 - MIT1002_04003 0.22 +0.0 4,490,870 - MIT1002_04003 0.22 +1.9 4,490,870 - MIT1002_04003 0.22 -0.1 4,490,870 - MIT1002_04003 0.22 -0.5 4,490,870 - MIT1002_04003 0.22 -2.4 4,490,870 - MIT1002_04003 0.22 +1.0 4,490,870 - MIT1002_04003 0.22 +0.5 4,490,967 + MIT1002_04003 0.30 -0.1 4,490,972 + MIT1002_04003 0.31 -1.4 4,490,989 - MIT1002_04003 0.32 -0.7 4,490,989 - MIT1002_04003 0.32 -1.1 4,491,009 - MIT1002_04003 0.34 -0.7 4,491,084 + MIT1002_04003 0.41 +0.4 4,491,092 - MIT1002_04003 0.42 -1.3 4,491,106 + MIT1002_04003 0.43 +1.0
Or see this region's nucleotide sequence