Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03970

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
4,453,366	+		MIT1002_03969	0.26	-1.7
4,453,374	-		MIT1002_03969	0.27	-1.6
4,453,392	+		MIT1002_03969	0.28	-1.4
4,453,402	-		MIT1002_03969	0.29	-0.3
4,453,473	+		MIT1002_03969	0.34	-0.9
4,453,473	+		MIT1002_03969	0.34	-1.9
4,453,503	-		MIT1002_03969	0.37	+0.3
4,453,530	+		MIT1002_03969	0.39	+0.1
4,453,548	+		MIT1002_03969	0.40	+0.2
4,453,556	-		MIT1002_03969	0.41	+1.1
4,453,564	+		MIT1002_03969	0.41	-0.6
4,453,595	+		MIT1002_03969	0.44	+1.2
4,453,595	+		MIT1002_03969	0.44	-0.3
4,453,595	+		MIT1002_03969	0.44	+2.1
4,453,595	+		MIT1002_03969	0.44	-0.6
4,453,595	+		MIT1002_03969	0.44	-1.2
4,453,595	+		MIT1002_03969	0.44	-0.4
4,453,603	-		MIT1002_03969	0.44	+0.5
4,453,603	-		MIT1002_03969	0.44	-0.7
4,453,680	-		MIT1002_03969	0.50	+1.9
4,453,684	+		MIT1002_03969	0.50	+2.8
4,453,685	-		MIT1002_03969	0.50	-0.7
4,453,702	-		MIT1002_03969	0.52	+1.5
4,453,757	-		MIT1002_03969	0.56	+3.3
4,453,801	+		MIT1002_03969	0.59	-0.2
4,453,857	-		MIT1002_03969	0.63	-1.2
4,454,081	-		MIT1002_03969	0.80	-0.0
4,454,117	-		MIT1002_03969	0.83	-0.2
4,454,131	+		MIT1002_03969	0.84	-2.0
4,454,139	-		MIT1002_03969	0.85	+1.0
4,454,160	-		MIT1002_03969	0.86	-1.2
4,454,165	-		MIT1002_03969	0.87	+0.5
4,454,230	-				-0.9
4,454,265	+				+0.9
4,454,305	-				-1.1
4,454,326	+				-0.2
4,454,378	+				-0.0
4,454,398	+				-1.5
4,454,415	-				-1.4
4,454,462	-				+0.1
4,454,511	+		MIT1002_03970	0.12	-3.8
4,454,511	+		MIT1002_03970	0.12	-1.3
4,454,519	-		MIT1002_03970	0.13	+0.3
4,454,519	-		MIT1002_03970	0.13	-0.2
4,454,545	+		MIT1002_03970	0.15	+1.1
4,454,545	+		MIT1002_03970	0.15	+0.3
4,454,545	+		MIT1002_03970	0.15	+0.5
4,454,553	-		MIT1002_03970	0.16	+0.8
4,454,553	-		MIT1002_03970	0.16	+0.6
4,454,553	-		MIT1002_03970	0.16	-0.2
4,454,553	-		MIT1002_03970	0.16	+1.7
4,454,553	-		MIT1002_03970	0.16	+1.5
4,454,611	+		MIT1002_03970	0.21	+1.2
4,454,611	+		MIT1002_03970	0.21	+4.5
4,454,619	-		MIT1002_03970	0.22	-1.0
4,454,619	-		MIT1002_03970	0.22	+0.7
4,454,638	+		MIT1002_03970	0.23	+0.1
4,454,665	+		MIT1002_03970	0.25	-1.9
4,454,667	-		MIT1002_03970	0.26	-1.1
4,454,713	-		MIT1002_03970	0.30	-0.0
4,454,762	+		MIT1002_03970	0.34	-1.1
4,454,770	-		MIT1002_03970	0.34	+0.7
4,454,892	-		MIT1002_03970	0.45	+1.1
4,454,931	-		MIT1002_03970	0.48	+0.0
4,454,931	-		MIT1002_03970	0.48	+0.0
4,454,973	+		MIT1002_03970	0.52	-0.3
4,455,047	+		MIT1002_03970	0.58	+0.6
4,455,055	-		MIT1002_03970	0.59	-1.1
4,455,089	-		MIT1002_03970	0.62	-0.0
4,455,091	-		MIT1002_03970	0.62	+0.9
4,455,091	-		MIT1002_03970	0.62	+0.2
4,455,099	-		MIT1002_03970	0.62	+2.8
4,455,131	+		MIT1002_03970	0.65	-0.5
4,455,229	-		MIT1002_03970	0.74	-0.2
4,455,230	+		MIT1002_03970	0.74	+2.4
4,455,276	+		MIT1002_03970	0.78	+1.0
4,455,276	+		MIT1002_03970	0.78	-1.1
4,455,279	-		MIT1002_03970	0.78	-0.2
4,455,282	+		MIT1002_03970	0.78	-0.1
4,455,328	+		MIT1002_03970	0.82	-1.2
4,455,377	+		MIT1002_03970	0.86	+0.3
4,455,377	+		MIT1002_03970	0.86	+0.4
4,455,419	-		MIT1002_03970	0.90	-0.4
4,455,421	+				+11.0
4,455,421	-				+1.9
4,455,429	-				-1.4
4,455,552	-				-0.6
4,455,585	+				-0.2
4,455,588	+				-0.0
4,455,600	+				-0.1
4,455,641	+				-1.2
4,455,641	+				-0.9
4,455,641	+				-2.5
4,455,643	+				-1.7
4,455,643	+				-1.9
4,455,643	+				-0.7
4,455,643	+				-1.1
4,455,649	-				-0.5
4,455,649	-				-1.1
4,455,649	-				-0.8
4,455,649	-				-2.2
4,455,649	-				+0.3
4,455,820	-				-0.0
4,455,841	+				+0.4
4,455,883	+				+1.5
4,455,891	-				+3.2
4,456,046	+		MIT1002_03971	0.15	-0.9
4,456,066	+		MIT1002_03971	0.16	+0.1
4,456,076	-		MIT1002_03971	0.16	-0.3
4,456,096	+		MIT1002_03971	0.17	+0.0
4,456,152	+		MIT1002_03971	0.19	-0.7
4,456,152	+		MIT1002_03971	0.19	-0.6
4,456,192	-		MIT1002_03971	0.21	+1.8
4,456,230	-		MIT1002_03971	0.23	-0.8
4,456,252	-		MIT1002_03971	0.24	-0.4
4,456,272	-		MIT1002_03971	0.24	+0.5
4,456,407	-		MIT1002_03971	0.30	+0.0
4,456,458	+		MIT1002_03971	0.32	-0.9
4,456,466	-		MIT1002_03971	0.32	-0.7
4,456,476	+		MIT1002_03971	0.33	+1.1
4,456,478	+		MIT1002_03971	0.33	-1.2
4,456,484	-		MIT1002_03971	0.33	-1.2