Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03939

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
4,421,136	+		MIT1002_03937	0.22	-1.4
4,421,136	+		MIT1002_03937	0.22	+10.7
4,421,201	-		MIT1002_03937	0.35	+1.2
4,421,213	-		MIT1002_03937	0.37	+0.0
4,421,233	-		MIT1002_03937	0.41	-0.9
4,421,322	-		MIT1002_03937	0.58	+1.8
4,421,387	+		MIT1002_03937	0.70	-1.1
4,421,393	-		MIT1002_03937	0.71	-1.2
4,421,443	+		MIT1002_03937	0.81	-0.2
4,421,474	+		MIT1002_03937	0.87	-0.9
4,421,482	-		MIT1002_03937	0.88	+1.6
4,421,482	-		MIT1002_03937	0.88	-0.8
4,421,482	-		MIT1002_03937	0.88	+1.5
4,421,487	-		MIT1002_03937	0.89	+0.3
4,421,498	+				+0.4
4,421,573	+				+0.3
4,421,581	-				-0.5
4,421,581	-				+1.0
4,421,581	-				-0.7
4,421,656	+				+0.2
4,421,662	-				+1.9
4,421,769	+				-0.5
4,421,865	+		MIT1002_03938	0.34	+0.5
4,421,865	+		MIT1002_03938	0.34	-1.2
4,421,866	+		MIT1002_03938	0.35	-0.8
4,421,897	+		MIT1002_03938	0.44	+0.7
4,421,906	-		MIT1002_03938	0.47	+1.0
4,422,031	-		MIT1002_03938	0.87	-2.1
4,422,047	+				+0.5
4,422,063	-				-2.4
4,422,063	-				+2.3
4,422,206	-				+0.7
4,422,257	+				+0.0
4,423,219	+		MIT1002_03939	0.57	+0.4
4,423,965	-				-2.1
4,423,982	+				+0.5
4,424,013	-				+0.9
4,424,015	+				-0.3
4,424,023	-				+0.5
4,424,024	-				-2.3
4,424,040	-				-0.3
4,424,061	+				+1.2
4,424,175	+				+0.5
4,424,336	+		MIT1002_03940	0.25	-1.9
4,424,342	-		MIT1002_03940	0.25	+1.5
4,424,476	+		MIT1002_03940	0.42	+2.8
4,424,492	+		MIT1002_03940	0.44	+1.7
4,424,589	+		MIT1002_03940	0.56	+0.5
4,424,736	-		MIT1002_03940	0.74	-0.6
4,424,773	+		MIT1002_03940	0.79	-0.1
4,424,892	+				-0.8
4,424,892	+				+0.6
4,424,892	+				+0.1
4,424,900	-				-1.4
4,424,900	-				-0.9
4,424,900	-				+1.5
4,424,900	-				+1.0
4,424,923	+				-1.2