Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03923

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
4,399,135	-				+2.3
4,399,263	-				-0.3
4,399,298	+				+1.0
4,399,313	+				-0.0
4,399,316	-				-1.1
4,399,316	-				-1.1
4,399,345	+				-0.3
4,399,345	+				+2.2
4,399,350	+		MIT1002_03922	0.10	-0.7
4,399,350	+		MIT1002_03922	0.10	-1.4
4,399,353	-		MIT1002_03922	0.11	+1.4
4,399,375	-		MIT1002_03922	0.14	-0.7
4,399,414	+		MIT1002_03922	0.19	-1.3
4,399,454	+		MIT1002_03922	0.24	+2.3
4,399,454	+		MIT1002_03922	0.24	-1.4
4,399,462	-		MIT1002_03922	0.25	+0.0
4,399,538	+		MIT1002_03922	0.35	-0.2
4,399,546	-		MIT1002_03922	0.37	+0.3
4,399,579	+		MIT1002_03922	0.41	-1.5
4,399,579	+		MIT1002_03922	0.41	+0.4
4,399,579	+		MIT1002_03922	0.41	-1.2
4,399,584	+		MIT1002_03922	0.42	-2.0
4,399,584	+		MIT1002_03922	0.42	+1.6
4,399,584	+		MIT1002_03922	0.42	+1.7
4,399,584	+		MIT1002_03922	0.42	+1.5
4,399,584	+		MIT1002_03922	0.42	+0.6
4,399,584	+		MIT1002_03922	0.42	-0.2
4,399,584	+		MIT1002_03922	0.42	-0.7
4,399,584	+		MIT1002_03922	0.42	+0.1
4,399,584	+		MIT1002_03922	0.42	+0.1
4,399,584	+		MIT1002_03922	0.42	+0.7
4,399,584	+		MIT1002_03922	0.42	+2.2
4,399,584	+		MIT1002_03922	0.42	+0.2
4,399,584	+		MIT1002_03922	0.42	+0.7
4,399,584	+		MIT1002_03922	0.42	-0.6
4,399,584	+		MIT1002_03922	0.42	-1.1
4,399,584	+		MIT1002_03922	0.42	-0.7
4,399,584	+		MIT1002_03922	0.42	-1.3
4,399,584	+		MIT1002_03922	0.42	-1.1
4,399,584	+		MIT1002_03922	0.42	+1.2
4,399,586	+		MIT1002_03922	0.42	-1.9
4,399,592	-		MIT1002_03922	0.43	-1.2
4,399,592	-		MIT1002_03922	0.43	-0.5
4,399,592	-		MIT1002_03922	0.43	-2.0
4,399,592	-		MIT1002_03922	0.43	+0.0
4,399,592	-		MIT1002_03922	0.43	+1.6
4,399,592	-		MIT1002_03922	0.43	+1.7
4,399,592	-		MIT1002_03922	0.43	-0.8
4,399,592	-		MIT1002_03922	0.43	+1.0
4,399,592	-		MIT1002_03922	0.43	-1.2
4,399,592	-		MIT1002_03922	0.43	-0.7
4,399,592	-		MIT1002_03922	0.43	+0.8
4,399,592	-		MIT1002_03922	0.43	-0.8
4,399,592	-		MIT1002_03922	0.43	+1.9
4,399,592	-		MIT1002_03922	0.43	-0.4
4,399,592	-		MIT1002_03922	0.43	-1.1
4,399,592	-		MIT1002_03922	0.43	+2.6
4,399,592	-		MIT1002_03922	0.43	-0.7
4,399,604	-		MIT1002_03922	0.44	+0.4
4,399,608	+		MIT1002_03922	0.45	-0.1
4,399,652	+		MIT1002_03922	0.51	-1.1
4,399,708	-		MIT1002_03922	0.58	+0.9
4,399,729	+		MIT1002_03922	0.61	+1.3
4,399,818	+		MIT1002_03922	0.73	+0.5
4,399,818	+		MIT1002_03922	0.73	+0.7
4,399,846	+		MIT1002_03922	0.77	+0.3
4,399,855	+		MIT1002_03922	0.78	+1.4
4,399,888	+		MIT1002_03922	0.82	+1.4
4,399,927	+		MIT1002_03922	0.88	-1.8
4,399,927	+		MIT1002_03922	0.88	+0.8
4,399,940	-		MIT1002_03922	0.89	+0.3
4,399,947	+				+0.8
4,400,079	-				+0.2
4,400,103	+				-0.7
4,400,166	-		MIT1002_03923	0.19	-2.2
4,400,209	+		MIT1002_03923	0.34	-0.6
4,400,215	+		MIT1002_03923	0.36	-2.2
4,400,217	-		MIT1002_03923	0.37	-0.9
4,400,376	+				+2.4
4,400,385	+				+0.2
4,400,445	+				-0.5
4,400,445	+				+0.2
4,400,453	-				-0.5
4,400,453	-				-0.3
4,400,455	-				-0.9
4,400,520	+				-0.1
4,400,520	+				+1.9
4,400,544	+				+0.2
4,400,544	+				-0.4
4,400,552	-				+0.0
4,400,552	-				-1.0
4,400,632	-				-2.2
4,400,632	-				+1.7
4,400,678	-		MIT1002_03924	0.19	-0.8
4,400,732	-		MIT1002_03924	0.29	+0.7
4,400,774	-		MIT1002_03924	0.38	-0.5
4,400,774	-		MIT1002_03924	0.38	-1.8
4,400,891	+		MIT1002_03924	0.60	-0.7
4,400,899	-		MIT1002_03924	0.62	-0.3
4,400,909	-		MIT1002_03924	0.64	-1.7
4,400,967	-		MIT1002_03924	0.75	-0.3
4,401,020	-		MIT1002_03924	0.86	-1.1
4,401,027	+		MIT1002_03924	0.87	-0.6
4,401,158	+				-0.6
4,401,158	+				-1.2
4,401,158	+				+0.5
4,401,166	-				-1.1
4,401,262	-				-2.5
4,401,280	+				+0.7
4,401,283	+				-0.1
4,401,361	-		MIT1002_03925	0.15	+0.9