Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03638

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
4,064,507	+		MIT1002_03637	0.44	-0.7
4,064,515	-		MIT1002_03637	0.44	+0.7
4,064,515	-		MIT1002_03637	0.44	-0.6
4,064,516	-		MIT1002_03637	0.45	+0.3
4,064,610	+		MIT1002_03637	0.52	-2.0
4,064,628	-		MIT1002_03637	0.53	+0.0
4,064,628	-		MIT1002_03637	0.53	-2.5
4,064,693	+		MIT1002_03637	0.58	-1.4
4,064,741	+		MIT1002_03637	0.62	+0.3
4,064,743	-		MIT1002_03637	0.62	-1.2
4,064,809	+		MIT1002_03637	0.67	-0.5
4,064,810	-		MIT1002_03637	0.67	+1.1
4,064,810	-		MIT1002_03637	0.67	+0.9
4,064,823	-		MIT1002_03637	0.68	-0.5
4,064,860	+		MIT1002_03637	0.71	+1.0
4,064,899	+		MIT1002_03637	0.74	-0.3
4,064,922	-		MIT1002_03637	0.76	-0.1
4,064,924	+		MIT1002_03637	0.76	-0.5
4,065,028	-		MIT1002_03637	0.84	+1.3
4,065,038	-		MIT1002_03637	0.84	-1.2
4,065,057	+		MIT1002_03637	0.86	-1.1
4,065,057	+		MIT1002_03637	0.86	+0.3
4,065,065	-		MIT1002_03637	0.87	-0.7
4,065,101	+		MIT1002_03637	0.89	-0.8
4,065,107	+		MIT1002_03637	0.90	-1.6
4,065,107	+		MIT1002_03637	0.90	+0.8
4,065,115	-				-1.0
4,065,115	-				+0.7
4,065,115	-				+1.0
4,065,115	-				+0.3
4,065,298	+				-1.2
4,065,306	-				-0.3
4,065,306	-				-2.3
4,065,320	+				-0.2
4,065,323	-				-2.2
4,065,333	-				+0.0
4,065,381	+				+2.0
4,065,394	+				-1.3
4,065,424	-				+0.4
4,065,442	-				-0.9
4,065,535	-				-1.3
4,065,598	-				-2.0
4,065,640	+		MIT1002_03638	0.11	-1.5
4,065,648	+		MIT1002_03638	0.12	-3.0
4,065,648	+		MIT1002_03638	0.12	-0.9
4,065,648	+		MIT1002_03638	0.12	-0.7
4,065,648	+		MIT1002_03638	0.12	+1.0
4,065,648	+		MIT1002_03638	0.12	-1.4
4,065,648	+		MIT1002_03638	0.12	-0.5
4,065,656	-		MIT1002_03638	0.13	-1.1
4,065,656	-		MIT1002_03638	0.13	-1.1
4,065,656	-		MIT1002_03638	0.13	+0.2
4,065,656	-		MIT1002_03638	0.13	-3.7
4,065,656	-		MIT1002_03638	0.13	+0.1
4,065,656	-		MIT1002_03638	0.13	-0.7
4,065,668	+		MIT1002_03638	0.14	-1.5
4,065,676	-		MIT1002_03638	0.14	-2.9
4,065,683	+		MIT1002_03638	0.15	-0.9
4,065,683	+		MIT1002_03638	0.15	-1.8
4,065,683	+		MIT1002_03638	0.15	-3.1
4,065,683	-		MIT1002_03638	0.15	-2.2
4,065,691	-		MIT1002_03638	0.15	-0.4
4,065,727	-		MIT1002_03638	0.18	-0.7
4,065,729	+		MIT1002_03638	0.18	-1.8
4,065,737	-		MIT1002_03638	0.19	-1.5
4,065,737	-		MIT1002_03638	0.19	-0.8
4,065,748	+		MIT1002_03638	0.19	+0.0
4,065,748	+		MIT1002_03638	0.19	-1.3
4,065,756	-		MIT1002_03638	0.20	-0.8
4,065,756	-		MIT1002_03638	0.20	-1.5
4,065,756	-		MIT1002_03638	0.20	-3.0
4,065,881	-		MIT1002_03638	0.29	-2.0
4,065,904	-		MIT1002_03638	0.31	-1.2
4,065,922	+		MIT1002_03638	0.32	-1.2
4,065,930	+		MIT1002_03638	0.33	-0.7
4,065,966	+		MIT1002_03638	0.36	-0.9
4,065,974	-		MIT1002_03638	0.36	-1.9
4,065,992	+		MIT1002_03638	0.38	+1.1
4,065,992	+		MIT1002_03638	0.38	-1.3
4,065,998	-		MIT1002_03638	0.38	-2.2
4,066,000	-		MIT1002_03638	0.38	-1.5
4,066,007	+		MIT1002_03638	0.39	-0.4
4,066,007	+		MIT1002_03638	0.39	-0.7
4,066,007	+		MIT1002_03638	0.39	-2.3
4,066,007	+		MIT1002_03638	0.39	-2.6
4,066,022	+		MIT1002_03638	0.40	-1.3
4,066,032	+		MIT1002_03638	0.41	-5.1
4,066,032	+		MIT1002_03638	0.41	-1.1
4,066,042	-		MIT1002_03638	0.41	+0.4
4,066,135	-		MIT1002_03638	0.48	-0.4
4,066,242	-		MIT1002_03638	0.56	-1.9
4,066,267	+		MIT1002_03638	0.58	-1.2
4,066,274	-		MIT1002_03638	0.58	-2.6
4,066,308	+		MIT1002_03638	0.61	-0.9
4,066,316	-		MIT1002_03638	0.62	+0.3
4,066,341	-		MIT1002_03638	0.63	-1.5
4,066,390	-		MIT1002_03638	0.67	-2.4
4,066,511	-		MIT1002_03638	0.76	-0.2
4,066,524	-		MIT1002_03638	0.77	-2.4
4,066,557	-		MIT1002_03638	0.79	+0.4
4,066,559	+		MIT1002_03638	0.80	-0.9
4,066,581	+		MIT1002_03638	0.81	+1.1
4,066,589	+		MIT1002_03638	0.82	-0.9
4,066,589	+		MIT1002_03638	0.82	-1.4
4,066,589	+		MIT1002_03638	0.82	-0.1
4,066,589	+		MIT1002_03638	0.82	-1.5
4,066,589	-		MIT1002_03638	0.82	-1.1
4,066,597	-		MIT1002_03638	0.82	-1.9
4,066,603	-		MIT1002_03638	0.83	-0.6
4,066,659	-		MIT1002_03638	0.87	-1.9
4,066,692	+		MIT1002_03638	0.89	-0.8
4,066,701	+				-0.8
4,066,701	+				-1.1
4,066,701	+				-0.3
4,066,709	-				+0.7
4,066,709	-				-1.3
4,066,709	-				-1.1
4,066,735	-				-2.3
4,066,740	-				+0.9
4,066,742	-				+1.0
4,066,781	-				-2.0
4,066,798	-				-1.2
4,066,806	+				-0.5
4,066,806	+				-1.6
4,066,806	+				-1.1
4,066,814	-				-2.0
4,066,814	-				-1.4
4,066,814	-				-0.7
4,066,814	-				+0.4
4,066,814	-				+0.4
4,066,830	+				+0.6
4,066,833	+				-1.6
4,066,836	-				+0.5
4,066,836	-				-1.1
4,066,951	-				+2.2
4,067,058	+				-0.9
4,067,093	-				+0.3
4,067,154	+		MIT1002_03639	0.11	-4.0
4,067,162	-		MIT1002_03639	0.11	+0.4
4,067,186	-		MIT1002_03639	0.12	-1.6
4,067,195	+		MIT1002_03639	0.13	-0.0
4,067,203	-		MIT1002_03639	0.13	+0.3
4,067,203	-		MIT1002_03639	0.13	+1.5
4,067,203	-		MIT1002_03639	0.13	+0.0
4,067,208	+		MIT1002_03639	0.13	-0.8
4,067,210	+		MIT1002_03639	0.13	-0.7
4,067,218	-		MIT1002_03639	0.14	-2.0
4,067,308	-		MIT1002_03639	0.18	+1.8
4,067,315	+		MIT1002_03639	0.18	+2.3
4,067,346	+		MIT1002_03639	0.20	+1.6
4,067,346	+		MIT1002_03639	0.20	-0.4
4,067,351	+		MIT1002_03639	0.20	+0.1
4,067,354	-		MIT1002_03639	0.20	+0.5
4,067,356	+		MIT1002_03639	0.20	-0.2
4,067,364	-		MIT1002_03639	0.20	-2.3
4,067,405	+		MIT1002_03639	0.22	+0.7
4,067,439	-		MIT1002_03639	0.24	+0.7
4,067,456	-		MIT1002_03639	0.25	+0.0
4,067,467	+		MIT1002_03639	0.25	+0.9
4,067,468	+		MIT1002_03639	0.25	-0.8
4,067,476	-		MIT1002_03639	0.25	+2.6
4,067,593	+		MIT1002_03639	0.31	+0.4
4,067,600	+		MIT1002_03639	0.31	-0.5
4,067,600	+		MIT1002_03639	0.31	-1.5
4,067,600	+		MIT1002_03639	0.31	-1.2
4,067,608	-		MIT1002_03639	0.31	-0.7
4,067,608	-		MIT1002_03639	0.31	-0.2
4,067,627	+		MIT1002_03639	0.32	+0.6
4,067,630	-		MIT1002_03639	0.32	-0.2
4,067,630	-		MIT1002_03639	0.32	-1.2
4,067,650	+		MIT1002_03639	0.33	-0.8