Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03599 and MIT1002_03600 are separated by 17 nucleotides MIT1002_03600 and MIT1002_03601 are separated by 12 nucleotides MIT1002_03601 and MIT1002_03602 are separated by 221 nucleotides MIT1002_03602 and MIT1002_03603 are separated by 132 nucleotides
MIT1002_03599: MIT1002_03599 - 50S ribosomal protein L5, at 4,019,775 to 4,020,314
_03599
MIT1002_03600: MIT1002_03600 - 50S ribosomal protein L24, at 4,020,332 to 4,020,646
_03600
MIT1002_03601: MIT1002_03601 - 50S ribosomal protein L14, at 4,020,659 to 4,021,027
_03601
MIT1002_03602: MIT1002_03602 - Autoinducer 2 sensor kinase/phosphatase LuxQ, at 4,021,249 to 4,023,357
_03602
MIT1002_03603: MIT1002_03603 - hypothetical protein, at 4,023,490 to 4,024,884
_03603
Position (kb) 4021
4022
4023
4024 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 4021.237 kb on + strand at 4021.237 kb on + strand at 4021.245 kb on - strand at 4021.280 kb on + strand at 4021.280 kb on + strand at 4021.290 kb on + strand at 4021.325 kb on - strand at 4021.429 kb on + strand at 4021.449 kb on - strand at 4021.470 kb on + strand, within MIT1002_03602 at 4021.478 kb on - strand, within MIT1002_03602 at 4021.478 kb on - strand, within MIT1002_03602 at 4021.478 kb on - strand, within MIT1002_03602 at 4021.491 kb on + strand, within MIT1002_03602 at 4021.693 kb on + strand, within MIT1002_03602 at 4021.727 kb on + strand, within MIT1002_03602 at 4021.763 kb on - strand, within MIT1002_03602 at 4021.803 kb on + strand, within MIT1002_03602 at 4021.807 kb on + strand, within MIT1002_03602 at 4021.811 kb on - strand, within MIT1002_03602 at 4021.817 kb on + strand, within MIT1002_03602 at 4021.817 kb on + strand, within MIT1002_03602 at 4021.817 kb on + strand, within MIT1002_03602 at 4021.817 kb on + strand, within MIT1002_03602 at 4021.825 kb on - strand, within MIT1002_03602 at 4021.825 kb on - strand, within MIT1002_03602 at 4021.850 kb on - strand, within MIT1002_03602 at 4021.851 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.852 kb on + strand, within MIT1002_03602 at 4021.859 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.860 kb on - strand, within MIT1002_03602 at 4021.973 kb on + strand, within MIT1002_03602 at 4021.976 kb on - strand, within MIT1002_03602 at 4022.118 kb on + strand, within MIT1002_03602 at 4022.120 kb on - strand, within MIT1002_03602 at 4022.121 kb on + strand, within MIT1002_03602 at 4022.139 kb on + strand, within MIT1002_03602 at 4022.155 kb on - strand, within MIT1002_03602 at 4022.187 kb on + strand, within MIT1002_03602 at 4022.187 kb on + strand, within MIT1002_03602 at 4022.197 kb on - strand, within MIT1002_03602 at 4022.207 kb on - strand, within MIT1002_03602 at 4022.284 kb on - strand, within MIT1002_03602 at 4022.307 kb on - strand, within MIT1002_03602 at 4022.336 kb on - strand, within MIT1002_03602 at 4022.336 kb on - strand, within MIT1002_03602 at 4022.363 kb on + strand, within MIT1002_03602 at 4022.376 kb on - strand, within MIT1002_03602 at 4022.383 kb on + strand, within MIT1002_03602 at 4022.499 kb on - strand, within MIT1002_03602 at 4022.504 kb on - strand, within MIT1002_03602 at 4022.540 kb on + strand, within MIT1002_03602 at 4022.578 kb on + strand, within MIT1002_03602 at 4022.578 kb on + strand, within MIT1002_03602 at 4022.650 kb on - strand, within MIT1002_03602 at 4022.650 kb on - strand, within MIT1002_03602 at 4022.673 kb on + strand, within MIT1002_03602 at 4022.695 kb on + strand, within MIT1002_03602 at 4022.749 kb on - strand, within MIT1002_03602 at 4022.754 kb on - strand, within MIT1002_03602 at 4022.793 kb on + strand, within MIT1002_03602 at 4022.793 kb on + strand, within MIT1002_03602 at 4022.795 kb on + strand, within MIT1002_03602 at 4022.944 kb on + strand, within MIT1002_03602 at 4022.960 kb on + strand, within MIT1002_03602 at 4022.967 kb on + strand, within MIT1002_03602 at 4022.968 kb on - strand, within MIT1002_03602 at 4022.968 kb on - strand, within MIT1002_03602 at 4022.989 kb on + strand, within MIT1002_03602 at 4023.106 kb on + strand, within MIT1002_03602 at 4023.124 kb on + strand, within MIT1002_03602 at 4023.132 kb on + strand, within MIT1002_03602 at 4023.132 kb on + strand, within MIT1002_03602 at 4023.135 kb on - strand, within MIT1002_03602 at 4023.146 kb on + strand, within MIT1002_03602 at 4023.148 kb on - strand at 4023.154 kb on - strand at 4023.422 kb on - strand at 4023.569 kb on + strand at 4023.577 kb on - strand at 4023.577 kb on - strand at 4023.584 kb on + strand at 4023.587 kb on + strand at 4023.593 kb on + strand at 4023.636 kb on + strand, within MIT1002_03603 at 4023.644 kb on - strand, within MIT1002_03603 at 4023.653 kb on - strand, within MIT1002_03603 at 4023.695 kb on + strand, within MIT1002_03603 at 4023.700 kb on + strand, within MIT1002_03603 at 4023.744 kb on + strand, within MIT1002_03603 at 4023.796 kb on - strand, within MIT1002_03603 at 4023.802 kb on - strand, within MIT1002_03603 at 4023.807 kb on - strand, within MIT1002_03603 at 4023.851 kb on + strand, within MIT1002_03603 at 4023.859 kb on + strand, within MIT1002_03603 at 4023.859 kb on + strand, within MIT1002_03603 at 4023.869 kb on + strand, within MIT1002_03603 at 4023.869 kb on + strand, within MIT1002_03603 at 4023.869 kb on + strand, within MIT1002_03603 at 4023.869 kb on + strand, within MIT1002_03603 at 4023.869 kb on + strand, within MIT1002_03603 at 4023.869 kb on + strand, within MIT1002_03603 at 4023.869 kb on + strand, within MIT1002_03603 at 4023.869 kb on + strand, within MIT1002_03603 at 4023.869 kb on + strand, within MIT1002_03603 at 4023.877 kb on - strand, within MIT1002_03603 at 4023.877 kb on - strand, within MIT1002_03603 at 4023.877 kb on - strand, within MIT1002_03603 at 4023.877 kb on - strand, within MIT1002_03603 at 4023.877 kb on - strand, within MIT1002_03603 at 4023.877 kb on - strand, within MIT1002_03603 at 4023.889 kb on - strand, within MIT1002_03603 at 4023.979 kb on - strand, within MIT1002_03603 at 4024.018 kb on + strand, within MIT1002_03603 at 4024.020 kb on + strand, within MIT1002_03603 at 4024.023 kb on - strand, within MIT1002_03603 at 4024.054 kb on - strand, within MIT1002_03603 at 4024.133 kb on + strand, within MIT1002_03603 at 4024.133 kb on + strand, within MIT1002_03603 at 4024.135 kb on + strand, within MIT1002_03603 at 4024.135 kb on + strand, within MIT1002_03603 at 4024.135 kb on + strand, within MIT1002_03603 at 4024.141 kb on - strand, within MIT1002_03603 at 4024.293 kb on + strand, within MIT1002_03603 at 4024.317 kb on - strand, within MIT1002_03603 at 4024.317 kb on - strand, within MIT1002_03603 at 4024.351 kb on + strand, within MIT1002_03603
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5 remove 4,021,237 + +0.2 4,021,237 + -0.2 4,021,245 - -1.4 4,021,280 + -1.6 4,021,280 + -1.1 4,021,290 + -0.1 4,021,325 - +0.3 4,021,429 + -1.0 4,021,449 - +0.1 4,021,470 + MIT1002_03602 0.10 -0.9 4,021,478 - MIT1002_03602 0.11 -1.5 4,021,478 - MIT1002_03602 0.11 +0.3 4,021,478 - MIT1002_03602 0.11 +0.2 4,021,491 + MIT1002_03602 0.11 -0.2 4,021,693 + MIT1002_03602 0.21 -0.2 4,021,727 + MIT1002_03602 0.23 -1.2 4,021,763 - MIT1002_03602 0.24 +0.1 4,021,803 + MIT1002_03602 0.26 -0.6 4,021,807 + MIT1002_03602 0.26 -2.8 4,021,811 - MIT1002_03602 0.27 -0.7 4,021,817 + MIT1002_03602 0.27 +8.1 4,021,817 + MIT1002_03602 0.27 +0.8 4,021,817 + MIT1002_03602 0.27 -1.5 4,021,817 + MIT1002_03602 0.27 -2.3 4,021,825 - MIT1002_03602 0.27 +0.5 4,021,825 - MIT1002_03602 0.27 -1.2 4,021,850 - MIT1002_03602 0.28 -0.5 4,021,851 + MIT1002_03602 0.29 -0.2 4,021,852 + MIT1002_03602 0.29 -0.5 4,021,852 + MIT1002_03602 0.29 -0.5 4,021,852 + MIT1002_03602 0.29 +0.4 4,021,852 + MIT1002_03602 0.29 +0.8 4,021,852 + MIT1002_03602 0.29 -1.1 4,021,852 + MIT1002_03602 0.29 -1.2 4,021,852 + MIT1002_03602 0.29 -0.7 4,021,852 + MIT1002_03602 0.29 +0.3 4,021,852 + MIT1002_03602 0.29 +1.6 4,021,852 + MIT1002_03602 0.29 -1.7 4,021,852 + MIT1002_03602 0.29 -0.8 4,021,852 + MIT1002_03602 0.29 -0.3 4,021,852 + MIT1002_03602 0.29 +0.6 4,021,852 + MIT1002_03602 0.29 +1.1 4,021,852 + MIT1002_03602 0.29 +1.5 4,021,852 + MIT1002_03602 0.29 +2.3 4,021,852 + MIT1002_03602 0.29 -1.7 4,021,852 + MIT1002_03602 0.29 -1.3 4,021,852 + MIT1002_03602 0.29 +1.7 4,021,852 + MIT1002_03602 0.29 -0.6 4,021,852 + MIT1002_03602 0.29 +0.7 4,021,852 + MIT1002_03602 0.29 -0.4 4,021,852 + MIT1002_03602 0.29 -2.3 4,021,852 + MIT1002_03602 0.29 -0.6 4,021,852 + MIT1002_03602 0.29 -1.0 4,021,852 + MIT1002_03602 0.29 +0.5 4,021,852 + MIT1002_03602 0.29 +1.0 4,021,852 + MIT1002_03602 0.29 +2.0 4,021,859 - MIT1002_03602 0.29 +0.4 4,021,860 - MIT1002_03602 0.29 -1.1 4,021,860 - MIT1002_03602 0.29 -1.0 4,021,860 - MIT1002_03602 0.29 -0.4 4,021,860 - MIT1002_03602 0.29 -0.4 4,021,860 - MIT1002_03602 0.29 -1.6 4,021,860 - MIT1002_03602 0.29 -2.3 4,021,860 - MIT1002_03602 0.29 -0.3 4,021,860 - MIT1002_03602 0.29 -0.5 4,021,860 - MIT1002_03602 0.29 -2.0 4,021,860 - MIT1002_03602 0.29 +1.1 4,021,860 - MIT1002_03602 0.29 -0.4 4,021,860 - MIT1002_03602 0.29 +0.4 4,021,860 - MIT1002_03602 0.29 +1.1 4,021,860 - MIT1002_03602 0.29 -2.5 4,021,860 - MIT1002_03602 0.29 +0.6 4,021,860 - MIT1002_03602 0.29 +0.1 4,021,860 - MIT1002_03602 0.29 -0.2 4,021,860 - MIT1002_03602 0.29 -0.2 4,021,860 - MIT1002_03602 0.29 -0.1 4,021,860 - MIT1002_03602 0.29 -0.7 4,021,860 - MIT1002_03602 0.29 -1.1 4,021,860 - MIT1002_03602 0.29 +0.6 4,021,860 - MIT1002_03602 0.29 +1.0 4,021,860 - MIT1002_03602 0.29 +0.4 4,021,860 - MIT1002_03602 0.29 +0.5 4,021,860 - MIT1002_03602 0.29 +0.6 4,021,860 - MIT1002_03602 0.29 -1.8 4,021,860 - MIT1002_03602 0.29 -3.8 4,021,860 - MIT1002_03602 0.29 +1.0 4,021,860 - MIT1002_03602 0.29 -0.6 4,021,860 - MIT1002_03602 0.29 -0.6 4,021,973 + MIT1002_03602 0.34 -0.4 4,021,976 - MIT1002_03602 0.34 +1.5 4,022,118 + MIT1002_03602 0.41 -0.1 4,022,120 - MIT1002_03602 0.41 +0.3 4,022,121 + MIT1002_03602 0.41 +0.5 4,022,139 + MIT1002_03602 0.42 -2.4 4,022,155 - MIT1002_03602 0.43 +1.9 4,022,187 + MIT1002_03602 0.44 +0.3 4,022,187 + MIT1002_03602 0.44 -0.8 4,022,197 - MIT1002_03602 0.45 +0.1 4,022,207 - MIT1002_03602 0.45 -0.9 4,022,284 - MIT1002_03602 0.49 -0.8 4,022,307 - MIT1002_03602 0.50 -1.9 4,022,336 - MIT1002_03602 0.52 -0.1 4,022,336 - MIT1002_03602 0.52 +1.3 4,022,363 + MIT1002_03602 0.53 -1.2 4,022,376 - MIT1002_03602 0.53 +0.1 4,022,383 + MIT1002_03602 0.54 -1.1 4,022,499 - MIT1002_03602 0.59 +0.0 4,022,504 - MIT1002_03602 0.60 -0.2 4,022,540 + MIT1002_03602 0.61 +0.5 4,022,578 + MIT1002_03602 0.63 -0.9 4,022,578 + MIT1002_03602 0.63 -2.9 4,022,650 - MIT1002_03602 0.66 +0.4 4,022,650 - MIT1002_03602 0.66 +0.5 4,022,673 + MIT1002_03602 0.68 +0.8 4,022,695 + MIT1002_03602 0.69 -1.1 4,022,749 - MIT1002_03602 0.71 -1.4 4,022,754 - MIT1002_03602 0.71 -2.1 4,022,793 + MIT1002_03602 0.73 -0.9 4,022,793 + MIT1002_03602 0.73 +1.0 4,022,795 + MIT1002_03602 0.73 +0.1 4,022,944 + MIT1002_03602 0.80 -0.0 4,022,960 + MIT1002_03602 0.81 +1.4 4,022,967 + MIT1002_03602 0.81 +0.1 4,022,968 - MIT1002_03602 0.82 -0.9 4,022,968 - MIT1002_03602 0.82 -1.3 4,022,989 + MIT1002_03602 0.83 -0.2 4,023,106 + MIT1002_03602 0.88 +0.4 4,023,124 + MIT1002_03602 0.89 -0.0 4,023,132 + MIT1002_03602 0.89 -0.3 4,023,132 + MIT1002_03602 0.89 -0.7 4,023,135 - MIT1002_03602 0.89 -0.3 4,023,146 + MIT1002_03602 0.90 -1.0 4,023,148 - -1.7 4,023,154 - -0.2 4,023,422 - -0.3 4,023,569 + -0.2 4,023,577 - -0.4 4,023,577 - -1.0 4,023,584 + -0.6 4,023,587 + -0.0 4,023,593 + +0.8 4,023,636 + MIT1002_03603 0.10 -0.8 4,023,644 - MIT1002_03603 0.11 -1.3 4,023,653 - MIT1002_03603 0.12 +0.7 4,023,695 + MIT1002_03603 0.15 +0.7 4,023,700 + MIT1002_03603 0.15 -1.0 4,023,744 + MIT1002_03603 0.18 -0.5 4,023,796 - MIT1002_03603 0.22 +0.2 4,023,802 - MIT1002_03603 0.22 -0.3 4,023,807 - MIT1002_03603 0.23 +1.2 4,023,851 + MIT1002_03603 0.26 -1.6 4,023,859 + MIT1002_03603 0.26 +0.8 4,023,859 + MIT1002_03603 0.26 +0.0 4,023,869 + MIT1002_03603 0.27 -2.3 4,023,869 + MIT1002_03603 0.27 +2.1 4,023,869 + MIT1002_03603 0.27 +0.3 4,023,869 + MIT1002_03603 0.27 -0.9 4,023,869 + MIT1002_03603 0.27 +0.1 4,023,869 + MIT1002_03603 0.27 -1.0 4,023,869 + MIT1002_03603 0.27 +0.9 4,023,869 + MIT1002_03603 0.27 -0.5 4,023,869 + MIT1002_03603 0.27 -0.4 4,023,877 - MIT1002_03603 0.28 +0.7 4,023,877 - MIT1002_03603 0.28 +0.3 4,023,877 - MIT1002_03603 0.28 -0.2 4,023,877 - MIT1002_03603 0.28 -2.5 4,023,877 - MIT1002_03603 0.28 +0.5 4,023,877 - MIT1002_03603 0.28 -0.7 4,023,889 - MIT1002_03603 0.29 +1.7 4,023,979 - MIT1002_03603 0.35 +0.2 4,024,018 + MIT1002_03603 0.38 +0.4 4,024,020 + MIT1002_03603 0.38 -0.1 4,024,023 - MIT1002_03603 0.38 +2.0 4,024,054 - MIT1002_03603 0.40 +0.5 4,024,133 + MIT1002_03603 0.46 +1.1 4,024,133 + MIT1002_03603 0.46 +0.0 4,024,135 + MIT1002_03603 0.46 -1.6 4,024,135 + MIT1002_03603 0.46 -0.4 4,024,135 + MIT1002_03603 0.46 +0.1 4,024,141 - MIT1002_03603 0.47 +0.6 4,024,293 + MIT1002_03603 0.58 -2.4 4,024,317 - MIT1002_03603 0.59 -0.0 4,024,317 - MIT1002_03603 0.59 +1.0 4,024,351 + MIT1002_03603 0.62 -0.2
Or see this region's nucleotide sequence