Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03506

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
3,915,329	-		MIT1002_03504	0.72	-0.0
3,915,346	-		MIT1002_03504	0.74	-0.3
3,915,373	-		MIT1002_03504	0.77	-0.4
3,915,374	-		MIT1002_03504	0.77	+0.2
3,915,374	-		MIT1002_03504	0.77	+0.5
3,915,399	+		MIT1002_03504	0.80	+0.1
3,915,421	+		MIT1002_03504	0.82	-0.6
3,915,421	+		MIT1002_03504	0.82	+0.5
3,915,429	-		MIT1002_03504	0.83	-4.5
3,915,429	-		MIT1002_03504	0.83	-2.3
3,915,429	-		MIT1002_03504	0.83	-0.6
3,915,440	-		MIT1002_03504	0.84	-1.4
3,915,460	-		MIT1002_03504	0.86	-0.2
3,915,484	-		MIT1002_03504	0.88	+0.7
3,915,519	-				-1.7
3,915,519	-				-1.5
3,915,555	+				-1.5
3,915,606	-				-0.7
3,915,630	-				+1.0
3,915,757	-		MIT1002_03505	0.18	+7.3
3,915,764	-		MIT1002_03505	0.19	+7.3
3,915,794	+		MIT1002_03505	0.23	+7.9
3,915,794	+		MIT1002_03505	0.23	+8.2
3,915,802	-		MIT1002_03505	0.25	+6.1
3,915,836	-		MIT1002_03505	0.30	+7.2
3,915,842	+		MIT1002_03505	0.30	+7.6
3,915,850	-		MIT1002_03505	0.32	+6.8
3,915,865	+		MIT1002_03505	0.34	+8.1
3,915,873	-		MIT1002_03505	0.35	+7.5
3,915,883	-		MIT1002_03505	0.36	+7.2
3,915,891	+		MIT1002_03505	0.38	+7.7
3,915,891	+		MIT1002_03505	0.38	+8.4
3,915,923	-		MIT1002_03505	0.42	+8.0
3,915,944	-		MIT1002_03505	0.45	+8.3
3,916,011	-		MIT1002_03505	0.55	+8.0
3,916,029	-		MIT1002_03505	0.58	+7.7
3,916,196	-		MIT1002_03505	0.82	+7.4
3,916,198	-		MIT1002_03505	0.82	+7.1
3,916,355	-				+2.2
3,916,499	+				-2.8
3,916,576	+		MIT1002_03506	0.14	+0.2
3,916,576	+		MIT1002_03506	0.14	-1.4
3,916,576	+		MIT1002_03506	0.14	-1.4
3,916,584	-		MIT1002_03506	0.14	+0.5
3,916,673	+		MIT1002_03506	0.19	+0.1
3,916,820	-		MIT1002_03506	0.27	-1.8
3,916,883	+		MIT1002_03506	0.30	+1.2
3,916,893	+		MIT1002_03506	0.31	-0.9
3,916,928	+		MIT1002_03506	0.33	+1.6
3,916,942	-		MIT1002_03506	0.34	-2.7
3,916,993	+		MIT1002_03506	0.36	+0.1
3,916,993	+		MIT1002_03506	0.36	+0.8
3,917,001	-		MIT1002_03506	0.37	-0.3
3,917,081	-		MIT1002_03506	0.41	+0.7
3,917,101	+		MIT1002_03506	0.42	-2.0
3,917,109	-		MIT1002_03506	0.43	+2.1
3,917,144	-		MIT1002_03506	0.45	-0.1
3,917,160	-		MIT1002_03506	0.46	-0.2
3,917,195	-		MIT1002_03506	0.47	-0.9
3,917,263	-		MIT1002_03506	0.51	-0.8
3,917,352	-		MIT1002_03506	0.56	+4.3
3,917,420	-		MIT1002_03506	0.60	+4.7
3,917,516	+		MIT1002_03506	0.65	+1.4
3,917,552	-		MIT1002_03506	0.67	+4.5
3,917,554	+		MIT1002_03506	0.67	-2.2
3,917,562	-		MIT1002_03506	0.68	+5.6
3,917,563	-		MIT1002_03506	0.68	+1.0
3,917,595	-		MIT1002_03506	0.69	+1.0
3,917,595	-		MIT1002_03506	0.69	+1.9
3,917,638	+		MIT1002_03506	0.72	+0.6
3,917,646	-		MIT1002_03506	0.72	+2.4
3,917,646	-		MIT1002_03506	0.72	+1.1
3,917,754	-		MIT1002_03506	0.78	+0.5
3,917,850	+		MIT1002_03506	0.83	+0.2
3,917,855	+		MIT1002_03506	0.84	-0.4
3,917,855	+		MIT1002_03506	0.84	-2.5
3,917,870	+		MIT1002_03506	0.84	-0.5
3,917,943	-		MIT1002_03506	0.88	-0.5
3,917,995	-				+0.7
3,918,061	-				-2.2
3,918,126	+				-2.5
3,918,230	+				+1.5
3,918,247	+				+2.4
3,918,255	-				+1.8
3,918,268	+				+6.9
3,918,279	+				+9.7
3,918,297	+				+8.9
3,918,339	+				+9.0
3,918,405	-				+7.9
3,918,478	+		MIT1002_03507	0.13	+1.6
3,918,486	-		MIT1002_03507	0.14	+9.2
3,918,532	-		MIT1002_03507	0.16	+4.3
3,918,633	-		MIT1002_03507	0.22	+8.6
3,918,681	+		MIT1002_03507	0.25	+9.6
3,918,737	+		MIT1002_03507	0.28	+9.7
3,918,742	+		MIT1002_03507	0.29	+8.7
3,918,750	-		MIT1002_03507	0.29	+8.7
3,918,828	-		MIT1002_03507	0.34	+9.0
3,918,865	-		MIT1002_03507	0.36	+8.3
3,918,865	-		MIT1002_03507	0.36	+8.5
3,918,872	-		MIT1002_03507	0.36	-2.4
3,918,891	+		MIT1002_03507	0.37	+9.6
3,918,925	-		MIT1002_03507	0.39	+7.2
3,918,932	+		MIT1002_03507	0.40	+10.1
3,919,023	-		MIT1002_03507	0.45	+9.4
3,919,052	+		MIT1002_03507	0.47	+5.7
3,919,052	+		MIT1002_03507	0.47	+5.1
3,919,060	-		MIT1002_03507	0.47	+2.8
3,919,060	-		MIT1002_03507	0.47	+3.1
3,919,060	-		MIT1002_03507	0.47	+3.6
3,919,072	+		MIT1002_03507	0.48	+9.4
3,919,080	-		MIT1002_03507	0.48	+9.5
3,919,080	-		MIT1002_03507	0.48	+7.6
3,919,100	+		MIT1002_03507	0.50	+8.8
3,919,137	+		MIT1002_03507	0.52	+10.5