Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03473

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
3,880,376	+		MIT1002_03471	0.34	+0.4
3,880,402	-		MIT1002_03471	0.37	+0.8
3,880,409	+		MIT1002_03471	0.38	-1.2
3,880,419	-		MIT1002_03471	0.39	+2.1
3,880,419	-		MIT1002_03471	0.39	+0.7
3,880,459	+		MIT1002_03471	0.44	-0.1
3,880,459	+		MIT1002_03471	0.44	+0.6
3,880,534	+		MIT1002_03471	0.52	-1.0
3,880,539	+		MIT1002_03471	0.52	-0.0
3,880,573	+		MIT1002_03471	0.56	+1.3
3,880,576	-		MIT1002_03471	0.57	-0.2
3,880,613	+		MIT1002_03471	0.61	-0.8
3,880,642	+		MIT1002_03471	0.64	-0.8
3,880,702	+		MIT1002_03471	0.70	-0.4
3,880,724	+		MIT1002_03471	0.73	+0.6
3,880,747	+		MIT1002_03471	0.75	+0.5
3,880,747	+		MIT1002_03471	0.75	+0.3
3,880,755	-		MIT1002_03471	0.76	-1.0
3,880,776	+		MIT1002_03471	0.79	-0.9
3,880,784	+		MIT1002_03471	0.79	+1.2
3,880,784	-		MIT1002_03471	0.79	+1.2
3,880,799	-		MIT1002_03471	0.81	-0.8
3,880,861	+		MIT1002_03471	0.88	+0.4
3,880,861	+		MIT1002_03471	0.88	+1.9
3,880,861	+		MIT1002_03471	0.88	+1.5
3,880,861	+		MIT1002_03471	0.88	-0.1
3,880,861	+		MIT1002_03471	0.88	+1.7
3,880,861	+		MIT1002_03471	0.88	+1.3
3,880,869	-		MIT1002_03471	0.89	-0.5
3,880,869	-		MIT1002_03471	0.89	+0.2
3,880,869	-		MIT1002_03471	0.89	-0.3
3,880,980	-				-1.1
3,881,004	-				+1.0
3,881,009	-				-0.2
3,881,009	-				-0.7
3,881,115	-		MIT1002_03472	0.32	-0.8
3,881,132	-		MIT1002_03472	0.39	-0.4
3,881,215	+		MIT1002_03472	0.73	-1.3
3,881,223	-		MIT1002_03472	0.77	+0.4
3,881,223	-		MIT1002_03472	0.77	-1.0
3,881,223	-		MIT1002_03472	0.77	-0.4
3,881,333	+				-0.1
3,881,333	+				+0.6
3,881,333	+				-1.3
3,881,333	+				-1.3
3,881,341	-				+1.4
3,881,341	-				-0.9
3,881,341	-				+1.8
3,881,341	-				-1.5
3,881,341	-				+0.5
3,881,341	-				-1.4
3,881,341	-				-0.2
3,881,400	+				+3.5
3,881,435	-				-1.0
3,881,486	-				-0.7
3,881,493	+		MIT1002_03473	0.10	-0.4
3,881,500	-		MIT1002_03473	0.11	-2.4
3,881,505	-		MIT1002_03473	0.11	+0.6
3,881,536	-		MIT1002_03473	0.14	-1.3
3,881,539	+		MIT1002_03473	0.14	+0.9
3,881,547	-		MIT1002_03473	0.14	+1.7
3,881,569	+		MIT1002_03473	0.16	-0.2
3,881,574	+		MIT1002_03473	0.16	-1.3
3,881,574	+		MIT1002_03473	0.16	+1.9
3,881,582	-		MIT1002_03473	0.17	-2.2
3,881,582	-		MIT1002_03473	0.17	-0.6
3,881,584	+		MIT1002_03473	0.17	-1.9
3,881,707	+		MIT1002_03473	0.26	+1.3
3,881,707	+		MIT1002_03473	0.26	+0.4
3,881,707	+		MIT1002_03473	0.26	-0.3
3,881,707	+		MIT1002_03473	0.26	+0.9
3,881,707	+		MIT1002_03473	0.26	+0.1
3,881,707	+		MIT1002_03473	0.26	+0.9
3,881,715	-		MIT1002_03473	0.27	+0.6
3,881,715	-		MIT1002_03473	0.27	-0.8
3,881,715	-		MIT1002_03473	0.27	+0.6
3,881,715	-		MIT1002_03473	0.27	+0.8
3,881,715	-		MIT1002_03473	0.27	-0.7
3,881,781	-		MIT1002_03473	0.32	+0.0
3,881,795	-		MIT1002_03473	0.33	+0.6
3,881,835	-		MIT1002_03473	0.36	+0.3
3,881,878	+		MIT1002_03473	0.39	+0.4
3,881,878	+		MIT1002_03473	0.39	+3.8
3,881,878	+		MIT1002_03473	0.39	+1.0
3,881,886	+		MIT1002_03473	0.40	-2.9
3,881,886	-		MIT1002_03473	0.40	+1.7
3,881,900	+		MIT1002_03473	0.41	-0.5
3,881,930	+		MIT1002_03473	0.43	+0.6
3,881,948	-		MIT1002_03473	0.44	+0.0
3,882,058	+		MIT1002_03473	0.53	-1.8
3,882,066	-		MIT1002_03473	0.53	+1.1
3,882,066	-		MIT1002_03473	0.53	+0.3
3,882,163	+		MIT1002_03473	0.60	+0.9
3,882,163	+		MIT1002_03473	0.60	-1.8
3,882,194	+		MIT1002_03473	0.63	-2.3
3,882,200	+		MIT1002_03473	0.63	+1.7
3,882,201	+		MIT1002_03473	0.63	-0.7
3,882,208	-		MIT1002_03473	0.64	+1.5
3,882,209	-		MIT1002_03473	0.64	-0.2
3,882,209	-		MIT1002_03473	0.64	+0.1
3,882,240	+		MIT1002_03473	0.66	-0.1
3,882,240	+		MIT1002_03473	0.66	+0.9
3,882,333	+		MIT1002_03473	0.73	-0.5
3,882,517	-		MIT1002_03473	0.87	-1.8
3,882,543	-		MIT1002_03473	0.89	-0.3
3,882,560	+				+1.6
3,882,560	+				-1.1
3,882,568	-				+1.2
3,882,595	-				-0.8
3,882,632	+				+0.7
3,882,652	+				-0.9
3,882,652	+				+1.8
3,882,759	+				+1.8
3,882,913	+				-1.5
3,882,943	+				-1.5
3,882,958	+				-0.5
3,882,958	-				-1.7
3,882,958	-				+1.2
3,883,101	+		MIT1002_03474	0.28	+0.6
3,883,108	-		MIT1002_03474	0.30	-0.9
3,883,134	-		MIT1002_03474	0.35	-1.0
3,883,177	-		MIT1002_03474	0.43	+1.6
3,883,191	+		MIT1002_03474	0.46	+0.4
3,883,191	+		MIT1002_03474	0.46	+0.6
3,883,199	-		MIT1002_03474	0.47	-0.7
3,883,199	-		MIT1002_03474	0.47	+11.4
3,883,199	-		MIT1002_03474	0.47	-1.4
3,883,199	-		MIT1002_03474	0.47	-0.3
3,883,206	-		MIT1002_03474	0.49	-0.5
3,883,209	-		MIT1002_03474	0.49	+0.4
3,883,222	+		MIT1002_03474	0.52	+0.2
3,883,285	+		MIT1002_03474	0.64	+0.2
3,883,363	+		MIT1002_03474	0.79	-0.6
3,883,437	+				-2.5
3,883,502	-				-0.1
3,883,514	+				-2.3
3,883,661	-		MIT1002_03475	0.12	-0.9