Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03385

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
3,786,012	-		MIT1002_03382	0.78	+0.2
3,786,033	-		MIT1002_03382	0.80	+0.1
3,786,119	+		MIT1002_03382	0.89	-0.1
3,786,127	-		MIT1002_03382	0.90	+2.3
3,786,136	-				-1.1
3,786,142	+				-0.7
3,786,277	-				-1.1
3,786,284	+				-1.2
3,786,386	+				-0.1
3,786,610	-		MIT1002_03383	0.63	-1.6
3,786,612	-		MIT1002_03383	0.63	-0.4
3,786,678	+		MIT1002_03383	0.82	+0.9
3,786,678	+		MIT1002_03383	0.82	+0.6
3,786,678	+		MIT1002_03383	0.82	-2.4
3,786,678	+		MIT1002_03383	0.82	+1.6
3,786,726	-				-0.5
3,786,840	-		MIT1002_03384	0.48	+0.8
3,786,840	-		MIT1002_03384	0.48	-0.5
3,786,841	-		MIT1002_03384	0.48	+0.3
3,786,845	-		MIT1002_03384	0.50	+0.7
3,786,845	-		MIT1002_03384	0.50	-1.5
3,786,894	-		MIT1002_03384	0.75	-0.9
3,786,994	+				+1.9
3,787,069	-				-0.6
3,787,118	-		MIT1002_03385	0.17	-0.6
3,787,166	-		MIT1002_03385	0.24	-1.1
3,787,166	-		MIT1002_03385	0.24	+0.2
3,787,285	+		MIT1002_03385	0.42	+0.1
3,787,297	+		MIT1002_03385	0.43	+0.5
3,787,305	-		MIT1002_03385	0.45	-0.6
3,787,310	+		MIT1002_03385	0.45	+1.2
3,787,417	-		MIT1002_03385	0.61	+1.5
3,787,473	-		MIT1002_03385	0.70	-2.6
3,787,490	+		MIT1002_03385	0.72	-0.9
3,787,492	+		MIT1002_03385	0.73	-0.7
3,787,498	-		MIT1002_03385	0.74	-2.8
3,787,508	-		MIT1002_03385	0.75	-1.7
3,787,518	+		MIT1002_03385	0.77	+0.9
3,787,535	+		MIT1002_03385	0.79	-0.8
3,787,633	-				+1.1
3,787,731	-				-0.3
3,787,740	+				-2.2
3,787,754	+				+0.5
3,787,761	+				-2.5
3,787,761	+				-0.5
3,787,938	+				+2.2
3,787,950	+				-1.2
3,787,958	-				+0.7
3,788,108	+		MIT1002_03386	0.35	+0.0
3,788,137	+		MIT1002_03386	0.45	-0.7
3,788,145	-		MIT1002_03386	0.48	-1.7
3,788,178	-		MIT1002_03386	0.59	+0.7
3,788,317	+				-1.1
3,788,325	-				-1.4
3,788,343	+				+0.1
3,788,351	-				+2.1
3,788,351	-				+0.2
3,788,351	-				-0.7
3,788,502	+				-2.5
3,788,510	-				+2.1