Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03351

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
3,746,579	-		MIT1002_03350	0.52	+0.0
3,746,625	-		MIT1002_03350	0.57	-0.6
3,746,632	+		MIT1002_03350	0.57	-0.7
3,746,632	+		MIT1002_03350	0.57	-0.6
3,746,640	-		MIT1002_03350	0.58	+0.6
3,746,658	+		MIT1002_03350	0.60	-0.7
3,746,658	+		MIT1002_03350	0.60	+1.7
3,746,666	-		MIT1002_03350	0.61	-1.0
3,746,668	+		MIT1002_03350	0.61	-0.2
3,746,678	+		MIT1002_03350	0.62	+0.9
3,746,723	-		MIT1002_03350	0.67	+0.3
3,746,774	-		MIT1002_03350	0.72	-0.2
3,746,819	-		MIT1002_03350	0.76	-0.1
3,746,819	-		MIT1002_03350	0.76	-1.2
3,746,953	-				-0.4
3,746,958	-				-2.4
3,746,980	-				-0.2
3,746,997	+				-0.3
3,747,005	-				-0.6
3,747,047	+				-0.1
3,747,049	+				+0.7
3,747,074	+				+0.3
3,747,138	-				-0.1
3,747,230	+				-0.9
3,747,230	+				+0.8
3,747,238	-				+0.7
3,747,238	-				+0.8
3,747,238	-				-0.3
3,747,289	+				-0.3
3,747,355	+				+0.1
3,747,355	+				-2.9
3,747,355	+				-2.3
3,747,375	-				+0.6
3,747,378	+				-0.1
3,747,411	-				-2.4
3,747,436	+				+0.6
3,747,480	+				-2.6
3,747,533	+				-0.7
3,747,605	-				-0.1
3,747,626	+				-0.4
3,747,626	+				-0.0
3,747,626	+				+1.6
3,747,626	+				+0.4
3,747,626	+				-0.3
3,747,626	+				+0.8
3,747,626	+				+0.7
3,747,631	+				+0.9
3,747,634	-				-1.2
3,747,634	-				+1.6
3,747,639	-				-1.4
3,747,648	-				-0.6
3,747,660	+				+0.2
3,747,660	+				-0.5
3,747,660	+				+0.9
3,747,714	-				+1.8
3,747,754	+		MIT1002_03351	0.11	+0.1
3,747,774	+		MIT1002_03351	0.12	-0.9
3,747,774	+		MIT1002_03351	0.12	-0.8
3,747,782	-		MIT1002_03351	0.12	+0.0
3,747,782	-		MIT1002_03351	0.12	+0.1
3,747,823	+		MIT1002_03351	0.14	+1.3
3,747,823	-		MIT1002_03351	0.14	+0.1
3,747,823	-		MIT1002_03351	0.14	+0.7
3,747,824	-		MIT1002_03351	0.14	-1.3
3,747,824	-		MIT1002_03351	0.14	-1.0
3,747,833	+		MIT1002_03351	0.14	+0.6
3,747,833	+		MIT1002_03351	0.14	+0.1
3,747,911	+		MIT1002_03351	0.17	+0.9
3,747,919	+		MIT1002_03351	0.18	+1.2
3,747,919	+		MIT1002_03351	0.18	+1.1
3,747,940	+		MIT1002_03351	0.18	+0.1
3,747,940	-		MIT1002_03351	0.18	-0.3
3,748,016	+		MIT1002_03351	0.21	-1.4
3,748,071	+		MIT1002_03351	0.23	+0.1
3,748,079	-		MIT1002_03351	0.24	-0.4
3,748,092	-		MIT1002_03351	0.24	+0.4
3,748,161	-		MIT1002_03351	0.27	+0.3
3,748,195	+		MIT1002_03351	0.28	-0.3
3,748,195	+		MIT1002_03351	0.28	-0.3
3,748,195	+		MIT1002_03351	0.28	-0.7
3,748,203	-		MIT1002_03351	0.28	-0.1
3,748,254	-		MIT1002_03351	0.30	-0.1
3,748,266	-		MIT1002_03351	0.31	+1.8
3,748,269	+		MIT1002_03351	0.31	+0.6
3,748,315	-		MIT1002_03351	0.33	-0.3
3,748,320	-		MIT1002_03351	0.33	+0.8
3,748,327	+		MIT1002_03351	0.33	+0.7
3,748,373	-		MIT1002_03351	0.35	-0.4
3,748,423	+		MIT1002_03351	0.37	-1.4
3,748,424	-		MIT1002_03351	0.37	-0.4
3,748,424	-		MIT1002_03351	0.37	-1.9
3,748,478	-		MIT1002_03351	0.39	+1.6
3,748,584	+		MIT1002_03351	0.43	+1.9
3,748,586	+		MIT1002_03351	0.43	+1.3
3,748,596	+		MIT1002_03351	0.43	-0.5
3,748,596	+		MIT1002_03351	0.43	+0.7
3,748,604	-		MIT1002_03351	0.44	-1.6
3,748,612	-		MIT1002_03351	0.44	-1.4
3,748,662	-		MIT1002_03351	0.46	+0.8
3,748,662	-		MIT1002_03351	0.46	+0.3
3,748,677	+		MIT1002_03351	0.46	-0.1
3,748,702	-		MIT1002_03351	0.47	-0.6
3,748,722	-		MIT1002_03351	0.48	+1.5
3,748,736	+		MIT1002_03351	0.49	+1.2
3,748,766	-		MIT1002_03351	0.50	-2.9
3,748,802	+		MIT1002_03351	0.51	+1.1
3,748,802	+		MIT1002_03351	0.51	+0.9
3,748,810	-		MIT1002_03351	0.51	-0.4
3,748,841	-		MIT1002_03351	0.52	-1.0
3,748,846	+		MIT1002_03351	0.53	-0.4
3,748,872	+		MIT1002_03351	0.54	-1.1
3,748,879	+		MIT1002_03351	0.54	+0.1
3,748,880	-		MIT1002_03351	0.54	-1.3
3,748,894	+		MIT1002_03351	0.54	+0.9
3,748,902	-		MIT1002_03351	0.55	+0.6
3,748,960	+		MIT1002_03351	0.57	+0.8
3,749,013	+		MIT1002_03351	0.59	-0.9
3,749,047	+		MIT1002_03351	0.60	-0.1
3,749,070	+		MIT1002_03351	0.61	+0.3
3,749,111	-		MIT1002_03351	0.63	+1.9
3,749,142	+		MIT1002_03351	0.64	-0.8
3,749,182	+		MIT1002_03351	0.65	+0.8
3,749,216	+		MIT1002_03351	0.67	-0.4
3,749,224	-		MIT1002_03351	0.67	+0.8
3,749,230	+		MIT1002_03351	0.67	+1.1
3,749,270	+		MIT1002_03351	0.69	+0.6
3,749,282	+		MIT1002_03351	0.69	+0.5
3,749,295	-		MIT1002_03351	0.70	+0.8
3,749,295	-		MIT1002_03351	0.70	+0.1
3,749,360	+		MIT1002_03351	0.72	-2.0
3,749,360	+		MIT1002_03351	0.72	+1.1
3,749,368	-		MIT1002_03351	0.72	-1.0
3,749,368	-		MIT1002_03351	0.72	-0.8
3,749,368	-		MIT1002_03351	0.72	+0.1
3,749,370	+		MIT1002_03351	0.72	+1.5
3,749,370	+		MIT1002_03351	0.72	-2.5
3,749,370	+		MIT1002_03351	0.72	+0.1
3,749,370	+		MIT1002_03351	0.72	+0.9
3,749,378	-		MIT1002_03351	0.73	-1.2
3,749,378	-		MIT1002_03351	0.73	-1.7
3,749,378	-		MIT1002_03351	0.73	-0.7
3,749,378	-		MIT1002_03351	0.73	+0.2
3,749,378	-		MIT1002_03351	0.73	+11.4
3,749,386	-		MIT1002_03351	0.73	-1.0
3,749,405	+		MIT1002_03351	0.74	+1.7
3,749,405	+		MIT1002_03351	0.74	-1.4
3,749,413	-		MIT1002_03351	0.74	+0.7
3,749,426	+		MIT1002_03351	0.75	-0.3
3,749,434	-		MIT1002_03351	0.75	-0.7
3,749,439	+		MIT1002_03351	0.75	+0.1
3,749,439	+		MIT1002_03351	0.75	-0.1
3,749,439	+		MIT1002_03351	0.75	+0.5
3,749,447	-		MIT1002_03351	0.75	+0.1
3,749,447	-		MIT1002_03351	0.75	+0.9
3,749,447	-		MIT1002_03351	0.75	+1.1
3,749,447	-		MIT1002_03351	0.75	+0.2
3,749,447	-		MIT1002_03351	0.75	-2.2
3,749,449	+		MIT1002_03351	0.75	+1.7
3,749,472	-		MIT1002_03351	0.76	-0.7
3,749,501	+		MIT1002_03351	0.77	+0.4
3,749,501	+		MIT1002_03351	0.77	+0.4
3,749,509	-		MIT1002_03351	0.78	-2.8
3,749,567	-		MIT1002_03351	0.80	-0.4
3,749,569	+		MIT1002_03351	0.80	+2.0
3,749,611	+		MIT1002_03351	0.82	+0.6
3,749,629	+		MIT1002_03351	0.82	-1.6
3,749,654	+		MIT1002_03351	0.83	+1.4
3,749,697	+		MIT1002_03351	0.85	-0.6
3,749,783	-		MIT1002_03351	0.88	-0.8
3,749,785	+		MIT1002_03351	0.88	+2.2
3,749,791	-		MIT1002_03351	0.88	-1.2
3,749,793	+		MIT1002_03351	0.88	+0.5
3,749,803	-		MIT1002_03351	0.89	-2.0
3,749,892	-				-1.6
3,749,924	+				-0.1
3,749,924	+				+0.8
3,749,953	-				+1.0
3,750,028	+				-0.8
3,750,030	+				-0.9
3,750,036	-				+0.1
3,750,064	+				-0.2
3,750,064	+				+1.4
3,750,191	-				-0.1
3,750,198	+				-0.6
3,750,243	-				+0.1
3,750,316	-		MIT1002_03352	0.12	+2.5
3,750,451	-		MIT1002_03352	0.29	+0.1
3,750,513	+		MIT1002_03352	0.36	-0.5
3,750,627	-		MIT1002_03352	0.50	+0.6
3,750,641	+		MIT1002_03352	0.52	+0.1
3,750,698	+		MIT1002_03352	0.59	-0.8
3,750,706	-		MIT1002_03352	0.60	+0.9
3,750,706	-		MIT1002_03352	0.60	+1.8
3,750,706	-		MIT1002_03352	0.60	+0.2
3,750,754	+		MIT1002_03352	0.65	+0.5
3,750,754	+		MIT1002_03352	0.65	+0.2
3,750,754	+		MIT1002_03352	0.65	+1.7
3,750,815	-		MIT1002_03352	0.73	-2.2
3,750,886	-		MIT1002_03352	0.82	-0.8
3,750,889	-		MIT1002_03352	0.82	+0.1
3,751,022	+				-1.3
3,751,047	-				-1.3
3,751,060	+				-0.1
3,751,083	+				+1.6