Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03293

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
3,671,076	-		MIT1002_03292	0.64	+0.0
3,671,222	+		MIT1002_03292	0.73	+0.1
3,671,354	+		MIT1002_03292	0.82	+0.8
3,671,362	-		MIT1002_03292	0.82	-0.8
3,671,412	+		MIT1002_03292	0.85	+0.6
3,671,428	+		MIT1002_03292	0.86	-2.7
3,671,475	+		MIT1002_03292	0.89	-1.6
3,671,500	+				+1.0
3,671,500	+				-1.2
3,671,500	+				+1.0
3,671,507	+				+0.3
3,671,508	-				-1.7
3,671,508	-				+0.8
3,671,508	-				+1.1
3,671,611	+				-0.9
3,671,657	+				-0.3
3,671,665	-				+0.8
3,671,665	-				+0.7
3,671,684	+				+0.6
3,671,684	-				+1.2
3,671,696	+				+0.7
3,671,697	-				-0.1
3,671,698	-				+1.2
3,671,755	-				-0.1
3,671,951	-				+0.3
3,672,092	-				+1.2
3,672,202	+				+0.9
3,672,210	-				-0.7
3,672,220	-				+0.2
3,672,304	+		MIT1002_03293	0.10	+0.2
3,672,312	-		MIT1002_03293	0.10	+1.6
3,672,328	+		MIT1002_03293	0.11	-0.5
3,672,328	+		MIT1002_03293	0.11	-1.7
3,672,374	+		MIT1002_03293	0.13	+1.6
3,672,374	+		MIT1002_03293	0.13	+0.0
3,672,374	+		MIT1002_03293	0.13	-0.6
3,672,374	+		MIT1002_03293	0.13	-2.0
3,672,374	+		MIT1002_03293	0.13	-0.9
3,672,382	-		MIT1002_03293	0.13	-0.5
3,672,382	-		MIT1002_03293	0.13	-0.8
3,672,463	+		MIT1002_03293	0.16	+2.2
3,672,479	+		MIT1002_03293	0.16	+0.4
3,672,479	+		MIT1002_03293	0.16	-1.3
3,672,479	+		MIT1002_03293	0.16	+0.6
3,672,479	+		MIT1002_03293	0.16	-1.4
3,672,487	-		MIT1002_03293	0.16	-0.5
3,672,516	-		MIT1002_03293	0.17	-2.0
3,672,523	-		MIT1002_03293	0.18	+3.1
3,672,562	-		MIT1002_03293	0.19	+0.2
3,672,562	-		MIT1002_03293	0.19	+0.1
3,672,569	+		MIT1002_03293	0.19	+2.9
3,672,577	-		MIT1002_03293	0.20	+0.6
3,672,577	-		MIT1002_03293	0.20	+2.1
3,672,701	-		MIT1002_03293	0.24	+0.9
3,672,701	-		MIT1002_03293	0.24	+1.6
3,672,711	-		MIT1002_03293	0.24	+0.7
3,672,711	-		MIT1002_03293	0.24	+1.0
3,672,711	-		MIT1002_03293	0.24	+1.1
3,672,750	+		MIT1002_03293	0.25	+0.2
3,672,750	+		MIT1002_03293	0.25	-0.4
3,672,876	-		MIT1002_03293	0.30	+2.9
3,672,914	+		MIT1002_03293	0.31	+0.3
3,672,915	+		MIT1002_03293	0.31	-1.1
3,672,922	-		MIT1002_03293	0.31	+0.2
3,672,963	+		MIT1002_03293	0.33	-0.7
3,672,975	+		MIT1002_03293	0.33	-0.6
3,672,976	-		MIT1002_03293	0.33	+1.5
3,672,998	+		MIT1002_03293	0.34	+3.6
3,673,040	+		MIT1002_03293	0.35	-0.6
3,673,087	-		MIT1002_03293	0.37	+1.4
3,673,236	+		MIT1002_03293	0.42	+1.3
3,673,236	+		MIT1002_03293	0.42	-0.2
3,673,236	+		MIT1002_03293	0.42	-0.9
3,673,239	-		MIT1002_03293	0.42	-0.8
3,673,244	-		MIT1002_03293	0.42	+1.7
3,673,244	-		MIT1002_03293	0.42	-1.5
3,673,244	-		MIT1002_03293	0.42	-0.3
3,673,244	-		MIT1002_03293	0.42	+0.8
3,673,259	-		MIT1002_03293	0.43	-0.4
3,673,506	-		MIT1002_03293	0.51	-2.3
3,673,528	+		MIT1002_03293	0.52	+0.3
3,673,536	-		MIT1002_03293	0.52	-2.0
3,673,536	-		MIT1002_03293	0.52	+0.1
3,673,549	-		MIT1002_03293	0.53	-0.7
3,673,630	+		MIT1002_03293	0.56	+0.4
3,673,630	+		MIT1002_03293	0.56	-1.2
3,673,630	-		MIT1002_03293	0.56	-1.6
3,673,640	+		MIT1002_03293	0.56	-0.2
3,673,648	-		MIT1002_03293	0.56	-0.9
3,673,656	+		MIT1002_03293	0.56	+0.8
3,673,656	+		MIT1002_03293	0.56	+0.5
3,673,656	+		MIT1002_03293	0.56	+0.1
3,673,664	-		MIT1002_03293	0.57	+0.6
3,673,664	-		MIT1002_03293	0.57	-0.3
3,673,664	-		MIT1002_03293	0.57	+0.0
3,673,664	-		MIT1002_03293	0.57	-0.9
3,673,664	-		MIT1002_03293	0.57	+2.3
3,673,740	-		MIT1002_03293	0.59	+0.9
3,673,746	-		MIT1002_03293	0.60	-0.1
3,673,751	+		MIT1002_03293	0.60	+1.6
3,673,763	+		MIT1002_03293	0.60	-0.8
3,673,771	-		MIT1002_03293	0.60	-1.5
3,673,915	-		MIT1002_03293	0.65	-0.2
3,673,934	-		MIT1002_03293	0.66	-2.1
3,673,979	-		MIT1002_03293	0.68	-1.0
3,673,987	+		MIT1002_03293	0.68	-0.2
3,673,992	+		MIT1002_03293	0.68	-0.2
3,674,014	-		MIT1002_03293	0.69	+0.9
3,674,046	+		MIT1002_03293	0.70	-0.1
3,674,075	+		MIT1002_03293	0.71	+1.2
3,674,145	-		MIT1002_03293	0.73	-2.5
3,674,156	-		MIT1002_03293	0.74	+0.9
3,674,180	+		MIT1002_03293	0.74	-0.1
3,674,188	-		MIT1002_03293	0.75	-1.4
3,674,249	-		MIT1002_03293	0.77	-0.1
3,674,391	-		MIT1002_03293	0.82	+0.2
3,674,417	-		MIT1002_03293	0.83	+0.2
3,674,525	+		MIT1002_03293	0.86	-0.4
3,674,546	+		MIT1002_03293	0.87	+0.6
3,674,645	+				+1.0
3,674,647	+				-0.8
3,675,211	+		MIT1002_03294	0.76	+0.3
3,675,229	-		MIT1002_03294	0.85	+1.7
3,675,229	-		MIT1002_03294	0.85	+0.7
3,675,229	-		MIT1002_03294	0.85	-0.6
3,675,229	-		MIT1002_03294	0.85	+0.4
3,675,248	-				+0.1
3,675,250	+				-0.2
3,675,327	+				-1.4
3,675,375	+				-0.6
3,675,505	-				-0.9
3,675,505	-				+0.6
3,675,572	+				-0.9
3,675,611	-				-0.8
3,675,778	+		MIT1002_03295	0.37	+0.6
3,675,788	+		MIT1002_03295	0.39	-0.4
3,675,790	+		MIT1002_03295	0.40	-2.3
3,675,858	-		MIT1002_03295	0.60	-1.9
3,675,858	-		MIT1002_03295	0.60	-0.8
3,675,858	-		MIT1002_03295	0.60	+0.1
3,675,885	-		MIT1002_03295	0.68	-2.3
3,675,895	+		MIT1002_03295	0.70	+0.4