Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02980

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
3,315,586	-		MIT1002_02979	0.34	+3.7
3,315,672	+		MIT1002_02979	0.41	+0.2
3,315,687	+		MIT1002_02979	0.42	+0.6
3,315,736	-		MIT1002_02979	0.46	-0.4
3,315,772	-		MIT1002_02979	0.48	+0.7
3,315,781	+		MIT1002_02979	0.49	+1.8
3,315,781	+		MIT1002_02979	0.49	-0.3
3,315,781	+		MIT1002_02979	0.49	+0.5
3,315,781	+		MIT1002_02979	0.49	+0.9
3,315,788	-		MIT1002_02979	0.50	+0.2
3,315,789	-		MIT1002_02979	0.50	-0.2
3,315,789	-		MIT1002_02979	0.50	-1.8
3,315,789	-		MIT1002_02979	0.50	-1.9
3,315,825	+		MIT1002_02979	0.52	-0.8
3,315,861	+		MIT1002_02979	0.55	+0.5
3,315,869	-		MIT1002_02979	0.56	-0.5
3,315,873	+		MIT1002_02979	0.56	+0.6
3,315,881	-		MIT1002_02979	0.57	-1.0
3,315,906	+		MIT1002_02979	0.59	-0.4
3,316,032	+		MIT1002_02979	0.68	+0.1
3,316,038	-		MIT1002_02979	0.69	+2.8
3,316,113	+		MIT1002_02979	0.75	-1.0
3,316,204	+		MIT1002_02979	0.82	-0.5
3,316,217	-		MIT1002_02979	0.83	-0.7
3,316,232	+		MIT1002_02979	0.84	+0.6
3,316,240	-		MIT1002_02979	0.85	-0.1
3,316,240	-		MIT1002_02979	0.85	+1.8
3,316,240	-		MIT1002_02979	0.85	-0.5
3,316,240	-		MIT1002_02979	0.85	-2.0
3,316,240	-		MIT1002_02979	0.85	-1.9
3,316,240	-		MIT1002_02979	0.85	-0.2
3,316,282	+		MIT1002_02979	0.88	+1.0
3,316,282	+		MIT1002_02979	0.88	+0.0
3,316,290	-		MIT1002_02979	0.88	-2.9
3,316,290	-		MIT1002_02979	0.88	-1.2
3,316,290	-		MIT1002_02979	0.88	-1.4
3,316,290	-		MIT1002_02979	0.88	-0.0
3,316,326	-				+0.5
3,316,530	+				+0.6
3,316,539	+				-0.5
3,316,644	+		MIT1002_02980	0.11	+0.3
3,316,670	-		MIT1002_02980	0.14	-0.3
3,316,687	-		MIT1002_02980	0.16	-1.5
3,316,788	-		MIT1002_02980	0.27	-0.6
3,316,801	+		MIT1002_02980	0.29	-2.0
3,316,801	+		MIT1002_02980	0.29	-0.3
3,316,802	+		MIT1002_02980	0.29	-0.6
3,316,810	-		MIT1002_02980	0.30	-0.3
3,316,810	-		MIT1002_02980	0.30	-0.9
3,316,810	-		MIT1002_02980	0.30	+1.5
3,316,810	-		MIT1002_02980	0.30	+1.7
3,316,810	-		MIT1002_02980	0.30	-1.6
3,316,830	+		MIT1002_02980	0.32	+1.7
3,316,893	-		MIT1002_02980	0.39	-0.5
3,316,905	+		MIT1002_02980	0.41	-0.5
3,316,926	-		MIT1002_02980	0.43	+1.4
3,317,008	+		MIT1002_02980	0.52	-1.1
3,317,053	+		MIT1002_02980	0.58	-0.5
3,317,061	-		MIT1002_02980	0.58	-1.4
3,317,089	+		MIT1002_02980	0.62	+0.1
3,317,091	-		MIT1002_02980	0.62	-0.2
3,317,104	+		MIT1002_02980	0.63	+0.1
3,317,122	+		MIT1002_02980	0.65	-1.4
3,317,189	+		MIT1002_02980	0.73	+0.8
3,317,197	-		MIT1002_02980	0.74	-0.5
3,317,328	+		MIT1002_02980	0.89	-1.4
3,317,335	+		MIT1002_02980	0.90	-1.2
3,317,336	-		MIT1002_02980	0.90	-0.1
3,317,336	-		MIT1002_02980	0.90	-1.0
3,317,336	-		MIT1002_02980	0.90	-0.0
3,317,336	-		MIT1002_02980	0.90	-0.9
3,317,336	-		MIT1002_02980	0.90	-1.2
3,317,336	-		MIT1002_02980	0.90	+1.5
3,317,336	-		MIT1002_02980	0.90	+0.8
3,317,340	+				-0.8
3,317,397	+				-0.4
3,317,461	-				-0.0
3,317,573	+				-0.9
3,317,573	+				+0.1
3,317,573	+				+0.6
3,317,576	-				+0.2
3,317,576	-				-1.5
3,317,630	-				+0.2
3,317,634	+				-2.5
3,317,642	-		MIT1002_02981	0.10	-1.1
3,317,723	-		MIT1002_02981	0.15	-0.4
3,317,786	+		MIT1002_02981	0.18	-0.3
3,317,787	-		MIT1002_02981	0.19	-1.2
3,317,793	+		MIT1002_02981	0.19	-0.2
3,317,956	+		MIT1002_02981	0.28	-0.9
3,317,961	+		MIT1002_02981	0.29	+1.1
3,317,964	-		MIT1002_02981	0.29	+0.0
3,317,969	-		MIT1002_02981	0.29	-0.2
3,317,969	-		MIT1002_02981	0.29	-0.1
3,317,974	-		MIT1002_02981	0.30	-0.6
3,317,974	-		MIT1002_02981	0.30	-1.0
3,317,994	+		MIT1002_02981	0.31	+0.3
3,317,994	+		MIT1002_02981	0.31	-0.1
3,318,004	-		MIT1002_02981	0.31	+1.5
3,318,054	-		MIT1002_02981	0.34	-0.5
3,318,065	+		MIT1002_02981	0.35	-0.6
3,318,135	+		MIT1002_02981	0.39	-1.0
3,318,135	+		MIT1002_02981	0.39	-0.9
3,318,160	-		MIT1002_02981	0.40	-1.8
3,318,172	-		MIT1002_02981	0.41	-0.5
3,318,174	+		MIT1002_02981	0.41	+0.3
3,318,181	-		MIT1002_02981	0.42	+0.0
3,318,221	+		MIT1002_02981	0.44	-0.3
3,318,269	+		MIT1002_02981	0.47	-1.4
3,318,366	-		MIT1002_02981	0.53	-1.3