Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02679

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
2,980,512	+				+1.1
2,980,521	-				-0.3
2,980,567	+				-1.1
2,980,567	+				-2.4
2,980,569	+				-4.2
2,980,717	-				-1.7
2,980,717	-				-1.1
2,980,747	+				-0.5
2,980,755	-				+1.5
2,980,755	-				-0.7
2,980,830	+		MIT1002_02678	0.12	-0.1
2,980,836	+		MIT1002_02678	0.13	+0.1
2,980,916	+		MIT1002_02678	0.23	-0.1
2,980,935	-		MIT1002_02678	0.26	-0.6
2,980,990	-		MIT1002_02678	0.33	-1.2
2,981,087	+		MIT1002_02678	0.46	+0.3
2,981,087	+		MIT1002_02678	0.46	+0.6
2,981,087	+		MIT1002_02678	0.46	-1.6
2,981,095	-		MIT1002_02678	0.47	-1.1
2,981,104	-		MIT1002_02678	0.48	-0.1
2,981,255	+		MIT1002_02678	0.68	-0.3
2,981,302	+		MIT1002_02678	0.74	-0.0
2,981,334	+		MIT1002_02678	0.79	-1.4
2,981,386	+		MIT1002_02678	0.86	-2.3
2,981,411	-		MIT1002_02678	0.89	-0.3
2,981,432	-				-0.5
2,981,433	-				-0.3
2,981,447	-				-0.3
2,981,464	+				+1.0
2,981,472	-				-0.1
2,981,509	-				+1.6
2,981,554	+				-0.5
2,981,575	+				-2.3
2,981,620	+		MIT1002_02679	0.11	-0.6
2,981,761	-		MIT1002_02679	0.25	-1.3
2,981,786	-		MIT1002_02679	0.28	-0.4
2,981,866	+		MIT1002_02679	0.36	-0.1
2,981,866	+		MIT1002_02679	0.36	-0.7
2,981,875	+		MIT1002_02679	0.37	-0.1
2,982,046	+		MIT1002_02679	0.54	-1.6
2,982,048	+		MIT1002_02679	0.55	-1.7
2,982,148	-		MIT1002_02679	0.65	-1.6
2,982,218	-		MIT1002_02679	0.72	-0.6
2,982,350	-		MIT1002_02679	0.85	+0.5
2,982,545	+				-0.2
2,982,545	+				-0.1
2,982,631	+				-0.1
2,982,631	+				-3.1
2,982,631	+				+0.4
2,982,646	+				-1.2
2,982,646	+				-0.2
2,983,405	+				-1.2
2,983,411	+				-1.5
2,983,413	-				+0.3
2,983,413	-				-0.4
2,983,478	-				+0.8