Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02519

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
2,809,163	+		MIT1002_02518	0.49	-1.7
2,809,219	-		MIT1002_02518	0.53	-1.0
2,809,332	-		MIT1002_02518	0.60	-1.0
2,809,363	+		MIT1002_02518	0.62	+1.8
2,809,413	+		MIT1002_02518	0.65	-1.9
2,809,413	+		MIT1002_02518	0.65	+1.7
2,809,430	+		MIT1002_02518	0.66	-0.1
2,809,430	+		MIT1002_02518	0.66	+1.0
2,809,430	+		MIT1002_02518	0.66	-1.5
2,809,430	+		MIT1002_02518	0.66	+0.3
2,809,430	+		MIT1002_02518	0.66	+0.9
2,809,430	+		MIT1002_02518	0.66	+0.4
2,809,438	-		MIT1002_02518	0.66	+1.4
2,809,438	-		MIT1002_02518	0.66	-0.3
2,809,438	-		MIT1002_02518	0.66	+0.8
2,809,438	-		MIT1002_02518	0.66	+0.3
2,809,440	+		MIT1002_02518	0.67	-1.1
2,809,496	+		MIT1002_02518	0.70	-2.6
2,809,506	+		MIT1002_02518	0.71	+0.3
2,809,506	+		MIT1002_02518	0.71	-0.6
2,809,506	+		MIT1002_02518	0.71	-0.6
2,809,506	+		MIT1002_02518	0.71	-0.4
2,809,506	+		MIT1002_02518	0.71	-1.0
2,809,506	+		MIT1002_02518	0.71	+0.6
2,809,506	+		MIT1002_02518	0.71	+0.8
2,809,514	-		MIT1002_02518	0.71	-0.2
2,809,514	-		MIT1002_02518	0.71	+1.2
2,809,514	-		MIT1002_02518	0.71	+2.1
2,809,514	-		MIT1002_02518	0.71	-2.0
2,809,514	-		MIT1002_02518	0.71	+0.3
2,809,514	-		MIT1002_02518	0.71	+2.7
2,809,514	-		MIT1002_02518	0.71	-2.4
2,809,519	-		MIT1002_02518	0.71	+0.3
2,809,519	-		MIT1002_02518	0.71	-1.1
2,809,524	-		MIT1002_02518	0.72	-0.3
2,809,529	-		MIT1002_02518	0.72	-0.4
2,809,560	+		MIT1002_02518	0.74	-0.9
2,809,560	+		MIT1002_02518	0.74	-0.2
2,809,560	+		MIT1002_02518	0.74	-0.8
2,809,560	+		MIT1002_02518	0.74	+1.7
2,809,563	-		MIT1002_02518	0.74	+1.4
2,809,563	-		MIT1002_02518	0.74	-0.4
2,809,563	-		MIT1002_02518	0.74	-1.6
2,809,565	+		MIT1002_02518	0.74	+0.8
2,809,568	-		MIT1002_02518	0.74	-0.1
2,809,583	-		MIT1002_02518	0.75	+0.5
2,809,590	+		MIT1002_02518	0.76	-0.2
2,809,592	+		MIT1002_02518	0.76	+1.3
2,809,592	+		MIT1002_02518	0.76	-0.3
2,809,592	+		MIT1002_02518	0.76	-0.0
2,809,592	+		MIT1002_02518	0.76	-2.1
2,809,592	+		MIT1002_02518	0.76	+0.1
2,809,600	-		MIT1002_02518	0.76	-0.5
2,809,632	+		MIT1002_02518	0.78	+0.1
2,809,665	+		MIT1002_02518	0.80	-0.2
2,809,673	-		MIT1002_02518	0.81	+0.8
2,809,708	-		MIT1002_02518	0.83	+1.7
2,809,741	-		MIT1002_02518	0.85	-0.4
2,809,782	-		MIT1002_02518	0.88	-0.1
2,809,916	-				-0.7
2,810,058	+				-0.1
2,810,117	+				+1.1
2,810,125	-				+0.4
2,810,168	+				-0.2
2,810,206	+		MIT1002_02519	0.13	+0.4
2,810,226	-		MIT1002_02519	0.16	+0.1
2,810,305	-		MIT1002_02519	0.30	-1.0
2,810,344	+		MIT1002_02519	0.37	-0.9
2,810,344	+		MIT1002_02519	0.37	+0.2
2,810,352	-		MIT1002_02519	0.38	-0.8
2,810,352	-		MIT1002_02519	0.38	-0.2
2,810,436	+		MIT1002_02519	0.52	+1.4
2,810,486	-		MIT1002_02519	0.61	-2.2
2,810,546	-		MIT1002_02519	0.71	+0.2
2,810,605	-		MIT1002_02519	0.81	-0.5
2,810,661	-				+0.4
2,810,760	-				-0.8
2,810,760	-				-0.4
2,810,902	+				+0.9
2,810,915	+				-0.3
2,810,935	-				-1.6
2,810,976	+				-0.3
2,810,984	-		MIT1002_02520	0.11	-0.7
2,811,018	+		MIT1002_02520	0.15	-1.1
2,811,064	+		MIT1002_02520	0.21	+1.8
2,811,120	-		MIT1002_02520	0.28	+0.6
2,811,125	+		MIT1002_02520	0.29	+0.7
2,811,156	+		MIT1002_02520	0.33	-0.1
2,811,182	+		MIT1002_02520	0.36	-1.3
2,811,220	+		MIT1002_02520	0.41	-0.9
2,811,220	+		MIT1002_02520	0.41	+0.2
2,811,221	+		MIT1002_02520	0.41	+0.6
2,811,221	+		MIT1002_02520	0.41	-0.8
2,811,221	+		MIT1002_02520	0.41	-4.4
2,811,228	-		MIT1002_02520	0.42	+0.7
2,811,228	-		MIT1002_02520	0.42	+0.9
2,811,228	-		MIT1002_02520	0.42	+1.7
2,811,336	-		MIT1002_02520	0.56	+2.4
2,811,364	+		MIT1002_02520	0.60	+0.4
2,811,364	+		MIT1002_02520	0.60	-0.5
2,811,425	-		MIT1002_02520	0.68	-2.1
2,811,431	+		MIT1002_02520	0.68	+1.2
2,811,456	-		MIT1002_02520	0.72	-0.3
2,811,498	+		MIT1002_02520	0.77	+0.4
2,811,498	+		MIT1002_02520	0.77	+0.4
2,811,511	+		MIT1002_02520	0.79	-0.3
2,811,511	+		MIT1002_02520	0.79	-3.9
2,811,526	-		MIT1002_02520	0.81	-1.5
2,811,527	-		MIT1002_02520	0.81	-1.0
2,811,527	-		MIT1002_02520	0.81	+0.8
2,811,545	+		MIT1002_02520	0.83	-3.0
2,811,545	+		MIT1002_02520	0.83	+0.9
2,811,545	+		MIT1002_02520	0.83	-0.9
2,811,545	+		MIT1002_02520	0.83	+2.5
2,811,545	+		MIT1002_02520	0.83	-2.1
2,811,545	+		MIT1002_02520	0.83	+0.5
2,811,553	-		MIT1002_02520	0.84	+1.1
2,811,553	-		MIT1002_02520	0.84	-0.3
2,811,595	+		MIT1002_02520	0.90	-1.0
2,811,600	+				-0.9
2,811,684	-				+2.6