Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02397

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
2,672,363	-		MIT1002_02395	0.68	-1.1
2,672,387	-		MIT1002_02395	0.71	-0.0
2,672,395	+		MIT1002_02395	0.72	-0.1
2,672,532	-		MIT1002_02395	0.87	-1.0
2,672,537	-		MIT1002_02395	0.88	+0.5
2,672,597	-				-0.6
2,672,597	-				-1.5
2,672,655	+				-1.3
2,672,724	+				+0.4
2,672,741	-				-2.3
2,672,780	+				+0.3
2,672,844	+				-0.4
2,672,883	+		MIT1002_02396	0.16	-0.1
2,672,927	+		MIT1002_02396	0.26	+1.0
2,672,949	+		MIT1002_02396	0.31	-1.2
2,672,957	-		MIT1002_02396	0.33	-0.2
2,672,971	+		MIT1002_02396	0.36	+0.1
2,672,986	+		MIT1002_02396	0.40	+0.1
2,673,010	-		MIT1002_02396	0.45	+1.9
2,673,101	-		MIT1002_02396	0.67	-3.0
2,673,109	-		MIT1002_02396	0.69	-0.8
2,673,120	+		MIT1002_02396	0.71	-0.1
2,673,212	+				-0.2
2,673,251	-				-0.6
2,673,304	+				-1.1
2,673,333	-				-1.0
2,673,358	+				-1.2
2,673,366	-				+0.9
2,673,373	+				-1.2
2,673,373	+				-0.6
2,673,396	-				-2.4
2,673,436	+				-0.9
2,673,477	+				-0.2
2,673,534	+		MIT1002_02397	0.12	-0.6
2,673,686	+		MIT1002_02397	0.22	-2.6
2,673,694	-		MIT1002_02397	0.23	-2.7
2,673,728	+		MIT1002_02397	0.25	+0.6
2,673,747	-		MIT1002_02397	0.26	-1.5
2,673,854	+		MIT1002_02397	0.33	+0.4
2,673,884	+		MIT1002_02397	0.35	+1.5
2,673,949	-		MIT1002_02397	0.39	-2.4
2,673,954	+		MIT1002_02397	0.39	-1.4
2,673,954	+		MIT1002_02397	0.39	-1.5
2,673,959	+		MIT1002_02397	0.40	+0.2
2,673,962	-		MIT1002_02397	0.40	-1.7
2,673,962	-		MIT1002_02397	0.40	-0.2
2,673,967	-		MIT1002_02397	0.40	+0.4
2,673,967	-		MIT1002_02397	0.40	+1.3
2,673,967	-		MIT1002_02397	0.40	-1.0
2,674,090	-		MIT1002_02397	0.48	+1.2
2,674,099	+		MIT1002_02397	0.49	+0.2
2,674,159	+		MIT1002_02397	0.53	-0.2
2,674,167	+		MIT1002_02397	0.53	-0.8
2,674,167	+		MIT1002_02397	0.53	-0.8
2,674,167	+		MIT1002_02397	0.53	-0.8
2,674,167	+		MIT1002_02397	0.53	+0.4
2,674,167	+		MIT1002_02397	0.53	+0.5
2,674,167	+		MIT1002_02397	0.53	+0.8
2,674,167	+		MIT1002_02397	0.53	-1.3
2,674,175	-		MIT1002_02397	0.54	-0.1
2,674,175	-		MIT1002_02397	0.54	-2.8
2,674,175	-		MIT1002_02397	0.54	+0.5
2,674,175	-		MIT1002_02397	0.54	-2.4
2,674,175	-		MIT1002_02397	0.54	-0.3
2,674,175	-		MIT1002_02397	0.54	-2.2
2,674,175	-		MIT1002_02397	0.54	-0.3
2,674,217	-		MIT1002_02397	0.56	-0.6
2,674,261	+		MIT1002_02397	0.59	-0.2
2,674,264	-		MIT1002_02397	0.59	-0.9
2,674,271	+		MIT1002_02397	0.60	+1.7
2,674,275	+		MIT1002_02397	0.60	-0.5
2,674,297	+		MIT1002_02397	0.61	-1.2
2,674,299	+		MIT1002_02397	0.62	+0.2
2,674,299	+		MIT1002_02397	0.62	-1.1
2,674,307	-		MIT1002_02397	0.62	-1.8
2,674,307	-		MIT1002_02397	0.62	-0.3
2,674,307	-		MIT1002_02397	0.62	+0.3
2,674,307	-		MIT1002_02397	0.62	-0.3
2,674,318	+		MIT1002_02397	0.63	-1.8
2,674,321	-		MIT1002_02397	0.63	-0.4
2,674,327	-		MIT1002_02397	0.63	+0.1
2,674,327	-		MIT1002_02397	0.63	+1.5
2,674,327	-		MIT1002_02397	0.63	-0.5
2,674,327	-		MIT1002_02397	0.63	-1.8
2,674,337	-		MIT1002_02397	0.64	+0.2
2,674,337	-		MIT1002_02397	0.64	-0.4
2,674,359	-		MIT1002_02397	0.65	+1.0
2,674,392	-		MIT1002_02397	0.68	-1.9
2,674,402	+		MIT1002_02397	0.68	-0.8
2,674,402	+		MIT1002_02397	0.68	+0.1
2,674,410	-		MIT1002_02397	0.69	+0.5
2,674,410	-		MIT1002_02397	0.69	-0.7
2,674,458	+		MIT1002_02397	0.72	-1.3
2,674,466	-		MIT1002_02397	0.72	-0.9
2,674,492	+		MIT1002_02397	0.74	-2.1
2,674,492	+		MIT1002_02397	0.74	-0.2
2,674,492	+		MIT1002_02397	0.74	+0.7
2,674,497	+		MIT1002_02397	0.74	+0.5
2,674,505	-		MIT1002_02397	0.75	+0.0
2,674,514	+		MIT1002_02397	0.75	+0.9
2,674,514	+		MIT1002_02397	0.75	-2.7
2,674,522	-		MIT1002_02397	0.76	-1.6
2,674,656	-		MIT1002_02397	0.85	-1.8
2,674,827	-				-0.1
2,674,829	+				+2.0
2,674,829	+				+1.2
2,674,829	+				-0.7
2,674,829	+				+2.4
2,674,829	+				-0.4
2,674,837	-				-1.5
2,674,837	-				-1.2
2,674,837	-				-3.1
2,674,933	-				-0.1
2,674,990	-				+0.1
2,675,006	-				-0.9
2,675,112	-				-1.6
2,675,112	-				-1.0
2,675,112	-				-0.9
2,675,143	+				-0.8
2,675,196	+				+1.6
2,675,224	-				-1.5
2,675,261	-				-0.7
2,675,330	+				-0.7
2,675,340	+				-0.5
2,675,362	-				-1.2
2,675,362	-				-2.8
2,675,362	-				-2.6
2,675,362	-				+0.4
2,675,367	-				-2.5
2,675,419	+				+0.2
2,675,445	+		MIT1002_02398	0.11	-0.8
2,675,479	+		MIT1002_02398	0.12	-0.8
2,675,487	-		MIT1002_02398	0.13	-1.7
2,675,552	+		MIT1002_02398	0.16	+0.7
2,675,583	+		MIT1002_02398	0.17	-2.9
2,675,583	+		MIT1002_02398	0.17	-1.5
2,675,591	-		MIT1002_02398	0.18	-0.9
2,675,598	+		MIT1002_02398	0.18	-0.8
2,675,603	+		MIT1002_02398	0.18	-1.9
2,675,814	-		MIT1002_02398	0.28	-0.9
2,675,815	+		MIT1002_02398	0.28	-3.4
2,675,878	+		MIT1002_02398	0.31	-2.0
2,675,878	+		MIT1002_02398	0.31	-0.3
2,675,885	-		MIT1002_02398	0.32	+1.1