Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01877

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
2,087,716	+		MIT1002_01876	0.29	-2.2
2,087,716	+		MIT1002_01876	0.29	-0.7
2,087,716	+		MIT1002_01876	0.29	-1.2
2,087,724	-		MIT1002_01876	0.29	+1.5
2,087,724	-		MIT1002_01876	0.29	+3.5
2,087,724	-		MIT1002_01876	0.29	-0.5
2,087,726	+		MIT1002_01876	0.30	-1.5
2,087,726	+		MIT1002_01876	0.30	-0.5
2,087,781	+		MIT1002_01876	0.34	+0.9
2,087,809	+		MIT1002_01876	0.36	+0.8
2,087,834	-		MIT1002_01876	0.38	-2.1
2,087,834	-		MIT1002_01876	0.38	-2.3
2,087,943	+		MIT1002_01876	0.46	+0.7
2,087,972	+		MIT1002_01876	0.48	+0.2
2,088,001	+		MIT1002_01876	0.50	-0.0
2,088,228	+		MIT1002_01876	0.67	+0.5
2,088,228	+		MIT1002_01876	0.67	-0.0
2,088,302	-		MIT1002_01876	0.72	-1.5
2,088,304	+		MIT1002_01876	0.72	+1.0
2,088,307	+		MIT1002_01876	0.72	+1.1
2,088,360	+		MIT1002_01876	0.76	-0.4
2,088,434	+		MIT1002_01876	0.82	-2.3
2,088,442	-		MIT1002_01876	0.82	-2.1
2,088,447	-		MIT1002_01876	0.83	+0.6
2,088,504	+		MIT1002_01876	0.87	+0.3
2,088,712	-				+1.6
2,088,717	+				+1.0
2,088,725	-				+0.5
2,088,759	-				+0.3
2,088,797	-				+1.3
2,088,879	-		MIT1002_01877	0.12	+0.8
2,088,911	+		MIT1002_01877	0.14	+0.2
2,088,919	-		MIT1002_01877	0.14	+0.5
2,088,924	+		MIT1002_01877	0.14	-2.0
2,088,924	-		MIT1002_01877	0.14	-0.1
2,088,987	+		MIT1002_01877	0.18	-0.6
2,088,997	+		MIT1002_01877	0.19	+0.1
2,089,049	+		MIT1002_01877	0.22	+0.7
2,089,105	+		MIT1002_01877	0.26	-1.3
2,089,120	-		MIT1002_01877	0.27	-2.0
2,089,211	+		MIT1002_01877	0.32	-1.5
2,089,242	-		MIT1002_01877	0.34	+0.8
2,089,247	+		MIT1002_01877	0.34	+0.2
2,089,247	+		MIT1002_01877	0.34	+0.8
2,089,255	-		MIT1002_01877	0.35	-0.9
2,089,294	-		MIT1002_01877	0.37	-0.2
2,089,314	+		MIT1002_01877	0.38	-0.7
2,089,373	-		MIT1002_01877	0.42	+2.2
2,089,590	+		MIT1002_01877	0.55	-0.9
2,089,590	+		MIT1002_01877	0.55	+0.7
2,089,625	+		MIT1002_01877	0.58	+0.8
2,089,633	-		MIT1002_01877	0.58	-0.8
2,089,633	-		MIT1002_01877	0.58	+0.4
2,089,665	+		MIT1002_01877	0.60	-0.3
2,089,668	-		MIT1002_01877	0.60	-0.7
2,089,753	+		MIT1002_01877	0.65	-1.4
2,089,761	-		MIT1002_01877	0.66	-0.1
2,089,851	+		MIT1002_01877	0.71	+1.3
2,089,851	+		MIT1002_01877	0.71	-0.2
2,089,851	+		MIT1002_01877	0.71	+1.5
2,089,851	+		MIT1002_01877	0.71	+0.1
2,089,851	+		MIT1002_01877	0.71	+2.0
2,089,859	-		MIT1002_01877	0.72	+1.5
2,089,859	-		MIT1002_01877	0.72	-0.5
2,089,859	-		MIT1002_01877	0.72	-1.7
2,089,859	-		MIT1002_01877	0.72	+0.8
2,089,859	-		MIT1002_01877	0.72	+1.2
2,089,859	-		MIT1002_01877	0.72	+0.8
2,089,859	-		MIT1002_01877	0.72	+0.1
2,089,881	-		MIT1002_01877	0.73	+0.6
2,090,088	+		MIT1002_01877	0.86	+0.3
2,090,088	+		MIT1002_01877	0.86	+1.2
2,090,088	+		MIT1002_01877	0.86	-1.1
2,090,096	-		MIT1002_01877	0.86	-0.8
2,090,096	-		MIT1002_01877	0.86	+1.8
2,090,136	+		MIT1002_01877	0.89	-0.8
2,090,144	-		MIT1002_01877	0.89	+1.2
2,090,144	-		MIT1002_01877	0.89	+0.2
2,090,146	+		MIT1002_01877	0.90	-0.2
2,090,154	-				+0.7
2,090,166	+				-1.1
2,090,166	+				+0.3
2,090,258	+				-2.0
2,090,271	-				-0.4
2,090,300	-				+1.2
2,090,368	-				-0.0
2,090,406	+				-0.8
2,090,472	+				+0.7
2,090,472	+				+0.1
2,090,482	+				+1.3
2,090,482	+				-0.5
2,090,490	-				-1.6
2,090,499	+				+1.3
2,090,508	+				-1.5
2,090,541	-		MIT1002_01878	0.14	+1.1
2,090,544	+		MIT1002_01878	0.15	+0.0
2,090,551	+		MIT1002_01878	0.16	-2.5
2,090,615	+		MIT1002_01878	0.28	-0.3
2,090,623	-		MIT1002_01878	0.29	-0.0
2,090,671	+		MIT1002_01878	0.38	+0.3
2,090,773	+		MIT1002_01878	0.58	-0.7
2,090,783	-		MIT1002_01878	0.60	-2.4
2,090,902	-		MIT1002_01878	0.82	-1.4
2,090,923	+		MIT1002_01878	0.86	+1.8
2,090,923	+		MIT1002_01878	0.86	+0.1
2,090,933	+		MIT1002_01878	0.88	+0.9
2,091,055	+				+0.3
2,091,212	-		MIT1002_01879	0.28	-0.9
2,091,246	-		MIT1002_01879	0.32	-0.9
2,091,257	-		MIT1002_01879	0.34	-1.7