Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01788

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_01786 and MIT1002_01787 are separated by 9 nucleotidesMIT1002_01787 and MIT1002_01788 are separated by 10 nucleotidesMIT1002_01788 and MIT1002_01789 are separated by 312 nucleotides MIT1002_01786: MIT1002_01786 - Ferric hydroxamate uptake, at 1,986,273 to 1,988,435 _01786 MIT1002_01787: MIT1002_01787 - hypothetical protein, at 1,988,445 to 1,988,981 _01787 MIT1002_01788: MIT1002_01788 - putative iron-regulated membrane protein, at 1,988,992 to 1,990,476 _01788 MIT1002_01789: MIT1002_01789 - Ubiquinone biosynthesis protein COQ7, at 1,990,789 to 1,991,367 _01789 Position (kb) 1988 1989 1990 1991Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1988.003 kb on + strand, within MIT1002_01786at 1988.009 kb on - strand, within MIT1002_01786at 1988.030 kb on - strand, within MIT1002_01786at 1988.037 kb on - strand, within MIT1002_01786at 1988.073 kb on - strand, within MIT1002_01786at 1988.090 kb on + strand, within MIT1002_01786at 1988.105 kb on + strand, within MIT1002_01786at 1988.133 kb on - strand, within MIT1002_01786at 1988.191 kb on + strand, within MIT1002_01786at 1988.193 kb on + strand, within MIT1002_01786at 1988.277 kb on - strandat 1988.377 kb on - strandat 1988.386 kb on + strandat 1988.399 kb on - strandat 1988.404 kb on - strandat 1988.423 kb on - strandat 1988.423 kb on - strandat 1988.467 kb on + strandat 1988.555 kb on + strand, within MIT1002_01787at 1988.563 kb on - strand, within MIT1002_01787at 1988.563 kb on - strand, within MIT1002_01787at 1988.567 kb on + strand, within MIT1002_01787at 1988.567 kb on + strand, within MIT1002_01787at 1988.575 kb on - strand, within MIT1002_01787at 1988.575 kb on - strand, within MIT1002_01787at 1988.592 kb on + strand, within MIT1002_01787at 1988.593 kb on + strand, within MIT1002_01787at 1988.615 kb on + strand, within MIT1002_01787at 1988.615 kb on + strand, within MIT1002_01787at 1988.719 kb on + strand, within MIT1002_01787at 1988.724 kb on + strand, within MIT1002_01787at 1988.727 kb on + strand, within MIT1002_01787at 1988.727 kb on - strand, within MIT1002_01787at 1988.727 kb on - strand, within MIT1002_01787at 1988.732 kb on - strand, within MIT1002_01787at 1988.732 kb on - strand, within MIT1002_01787at 1988.744 kb on + strand, within MIT1002_01787at 1988.757 kb on - strand, within MIT1002_01787at 1988.763 kb on + strand, within MIT1002_01787at 1988.771 kb on + strand, within MIT1002_01787at 1988.791 kb on + strand, within MIT1002_01787at 1988.791 kb on + strand, within MIT1002_01787at 1988.827 kb on - strand, within MIT1002_01787at 1988.831 kb on + strand, within MIT1002_01787at 1988.845 kb on - strand, within MIT1002_01787at 1988.852 kb on - strand, within MIT1002_01787at 1988.853 kb on - strand, within MIT1002_01787at 1988.872 kb on + strand, within MIT1002_01787at 1988.893 kb on - strand, within MIT1002_01787at 1989.055 kb on + strandat 1989.078 kb on + strandat 1989.116 kb on + strandat 1989.117 kb on + strandat 1989.209 kb on + strand, within MIT1002_01788at 1989.228 kb on + strand, within MIT1002_01788at 1989.399 kb on - strand, within MIT1002_01788at 1989.409 kb on - strand, within MIT1002_01788at 1989.417 kb on + strand, within MIT1002_01788at 1989.425 kb on + strand, within MIT1002_01788at 1989.427 kb on + strand, within MIT1002_01788at 1989.538 kb on - strand, within MIT1002_01788at 1989.678 kb on + strand, within MIT1002_01788at 1989.682 kb on + strand, within MIT1002_01788at 1989.799 kb on - strand, within MIT1002_01788at 1989.823 kb on + strand, within MIT1002_01788at 1989.850 kb on - strand, within MIT1002_01788at 1989.884 kb on - strand, within MIT1002_01788at 1989.932 kb on - strand, within MIT1002_01788at 1989.986 kb on + strand, within MIT1002_01788at 1989.989 kb on - strand, within MIT1002_01788at 1990.030 kb on + strand, within MIT1002_01788at 1990.044 kb on + strand, within MIT1002_01788at 1990.086 kb on - strand, within MIT1002_01788at 1990.086 kb on - strand, within MIT1002_01788at 1990.093 kb on + strand, within MIT1002_01788at 1990.093 kb on + strand, within MIT1002_01788at 1990.101 kb on - strand, within MIT1002_01788at 1990.101 kb on - strand, within MIT1002_01788at 1990.101 kb on - strand, within MIT1002_01788at 1990.101 kb on - strand, within MIT1002_01788at 1990.101 kb on - strand, within MIT1002_01788at 1990.101 kb on - strand, within MIT1002_01788at 1990.101 kb on - strand, within MIT1002_01788at 1990.158 kb on - strand, within MIT1002_01788at 1990.196 kb on + strand, within MIT1002_01788at 1990.256 kb on + strand, within MIT1002_01788at 1990.321 kb on + strand, within MIT1002_01788at 1990.359 kb on - strandat 1990.391 kb on - strandat 1990.544 kb on + strandat 1990.629 kb on + strandat 1990.947 kb on + strand, within MIT1002_01789at 1990.955 kb on - strand, within MIT1002_01789at 1990.963 kb on + strand, within MIT1002_01789at 1991.016 kb on + strand, within MIT1002_01789at 1991.016 kb on + strand, within MIT1002_01789at 1991.024 kb on - strand, within MIT1002_01789at 1991.024 kb on - strand, within MIT1002_01789at 1991.093 kb on - strand, within MIT1002_01789at 1991.194 kb on + strand, within MIT1002_01789at 1991.460 kb on + strandat 1991.468 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
remove
1,988,003 + MIT1002_01786 0.80 +0.2
1,988,009 - MIT1002_01786 0.80 -1.6
1,988,030 - MIT1002_01786 0.81 -0.6
1,988,037 - MIT1002_01786 0.82 -0.3
1,988,073 - MIT1002_01786 0.83 +0.9
1,988,090 + MIT1002_01786 0.84 -1.6
1,988,105 + MIT1002_01786 0.85 -0.2
1,988,133 - MIT1002_01786 0.86 -0.8
1,988,191 + MIT1002_01786 0.89 -0.8
1,988,193 + MIT1002_01786 0.89 -0.6
1,988,277 - -0.7
1,988,377 - +1.7
1,988,386 + +0.2
1,988,399 - -1.0
1,988,404 - +0.4
1,988,423 - +1.2
1,988,423 - +0.1
1,988,467 + +1.5
1,988,555 + MIT1002_01787 0.20 -0.6
1,988,563 - MIT1002_01787 0.22 -1.4
1,988,563 - MIT1002_01787 0.22 -0.2
1,988,567 + MIT1002_01787 0.23 -1.0
1,988,567 + MIT1002_01787 0.23 -0.9
1,988,575 - MIT1002_01787 0.24 -0.2
1,988,575 - MIT1002_01787 0.24 -0.2
1,988,592 + MIT1002_01787 0.27 +3.0
1,988,593 + MIT1002_01787 0.28 +0.4
1,988,615 + MIT1002_01787 0.32 -0.8
1,988,615 + MIT1002_01787 0.32 -0.6
1,988,719 + MIT1002_01787 0.51 +1.3
1,988,724 + MIT1002_01787 0.52 +0.9
1,988,727 + MIT1002_01787 0.53 +1.1
1,988,727 - MIT1002_01787 0.53 -0.0
1,988,727 - MIT1002_01787 0.53 +1.4
1,988,732 - MIT1002_01787 0.53 +0.2
1,988,732 - MIT1002_01787 0.53 -1.0
1,988,744 + MIT1002_01787 0.56 -1.1
1,988,757 - MIT1002_01787 0.58 +0.8
1,988,763 + MIT1002_01787 0.59 +1.5
1,988,771 + MIT1002_01787 0.61 -0.0
1,988,791 + MIT1002_01787 0.64 +0.3
1,988,791 + MIT1002_01787 0.64 -0.7
1,988,827 - MIT1002_01787 0.71 -0.7
1,988,831 + MIT1002_01787 0.72 +0.1
1,988,845 - MIT1002_01787 0.74 -0.7
1,988,852 - MIT1002_01787 0.76 +0.7
1,988,853 - MIT1002_01787 0.76 -0.0
1,988,872 + MIT1002_01787 0.80 +0.4
1,988,893 - MIT1002_01787 0.83 +0.9
1,989,055 + +0.6
1,989,078 + -0.9
1,989,116 + +0.5
1,989,117 + -0.2
1,989,209 + MIT1002_01788 0.15 +0.4
1,989,228 + MIT1002_01788 0.16 -1.4
1,989,399 - MIT1002_01788 0.27 +1.0
1,989,409 - MIT1002_01788 0.28 -0.6
1,989,417 + MIT1002_01788 0.29 +1.0
1,989,425 + MIT1002_01788 0.29 -1.7
1,989,427 + MIT1002_01788 0.29 -0.6
1,989,538 - MIT1002_01788 0.37 +0.1
1,989,678 + MIT1002_01788 0.46 -1.8
1,989,682 + MIT1002_01788 0.46 +0.7
1,989,799 - MIT1002_01788 0.54 -0.0
1,989,823 + MIT1002_01788 0.56 +0.2
1,989,850 - MIT1002_01788 0.58 -0.8
1,989,884 - MIT1002_01788 0.60 -0.1
1,989,932 - MIT1002_01788 0.63 -0.9
1,989,986 + MIT1002_01788 0.67 -3.9
1,989,989 - MIT1002_01788 0.67 -0.0
1,990,030 + MIT1002_01788 0.70 -1.2
1,990,044 + MIT1002_01788 0.71 -0.0
1,990,086 - MIT1002_01788 0.74 -0.9
1,990,086 - MIT1002_01788 0.74 -3.1
1,990,093 + MIT1002_01788 0.74 +0.9
1,990,093 + MIT1002_01788 0.74 -0.9
1,990,101 - MIT1002_01788 0.75 -0.1
1,990,101 - MIT1002_01788 0.75 +0.1
1,990,101 - MIT1002_01788 0.75 +0.7
1,990,101 - MIT1002_01788 0.75 +0.1
1,990,101 - MIT1002_01788 0.75 -3.0
1,990,101 - MIT1002_01788 0.75 -2.4
1,990,101 - MIT1002_01788 0.75 -0.9
1,990,158 - MIT1002_01788 0.79 +1.6
1,990,196 + MIT1002_01788 0.81 +2.1
1,990,256 + MIT1002_01788 0.85 -0.7
1,990,321 + MIT1002_01788 0.89 +0.4
1,990,359 - -0.6
1,990,391 - -0.3
1,990,544 + +0.4
1,990,629 + -1.2
1,990,947 + MIT1002_01789 0.27 +0.9
1,990,955 - MIT1002_01789 0.29 +0.4
1,990,963 + MIT1002_01789 0.30 +1.2
1,991,016 + MIT1002_01789 0.39 -1.3
1,991,016 + MIT1002_01789 0.39 -0.1
1,991,024 - MIT1002_01789 0.41 +0.8
1,991,024 - MIT1002_01789 0.41 +0.6
1,991,093 - MIT1002_01789 0.53 +2.9
1,991,194 + MIT1002_01789 0.70 +1.6
1,991,460 + -0.0
1,991,468 - +0.6

Or see this region's nucleotide sequence