Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01169

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
1,284,207	-		MIT1002_01168	0.84	-0.4
1,284,234	-		MIT1002_01168	0.86	-0.4
1,284,285	+				-1.0
1,284,521	-				+1.4
1,284,523	+				+0.8
1,284,523	+				-1.5
1,284,531	-				+1.5
1,284,579	+				+0.8
1,284,648	+				+0.3
1,284,691	-				+1.2
1,284,819	-				-2.3
1,284,822	-				-0.4
1,284,829	-				-1.3
1,284,848	-				-0.4
1,284,870	-		MIT1002_01169	0.10	-1.6
1,284,870	-		MIT1002_01169	0.10	-1.2
1,284,917	+		MIT1002_01169	0.12	+0.4
1,284,993	+		MIT1002_01169	0.16	-0.7
1,285,022	+		MIT1002_01169	0.17	+2.4
1,285,062	+		MIT1002_01169	0.19	-0.4
1,285,070	-		MIT1002_01169	0.19	-0.9
1,285,092	+		MIT1002_01169	0.20	-0.1
1,285,261	+		MIT1002_01169	0.28	-1.1
1,285,261	+		MIT1002_01169	0.28	+1.3
1,285,261	+		MIT1002_01169	0.28	-1.0
1,285,261	+		MIT1002_01169	0.28	-0.7
1,285,261	+		MIT1002_01169	0.28	+0.0
1,285,261	+		MIT1002_01169	0.28	-2.2
1,285,262	-		MIT1002_01169	0.28	+0.2
1,285,262	-		MIT1002_01169	0.28	-0.4
1,285,269	-		MIT1002_01169	0.28	-0.5
1,285,269	-		MIT1002_01169	0.28	-0.7
1,285,269	-		MIT1002_01169	0.28	+1.7
1,285,269	-		MIT1002_01169	0.28	-1.8
1,285,269	-		MIT1002_01169	0.28	-1.1
1,285,269	-		MIT1002_01169	0.28	-0.4
1,285,269	-		MIT1002_01169	0.28	+1.6
1,285,269	-		MIT1002_01169	0.28	+1.5
1,285,269	-		MIT1002_01169	0.28	-1.3
1,285,269	-		MIT1002_01169	0.28	-0.9
1,285,269	-		MIT1002_01169	0.28	-1.4
1,285,294	-		MIT1002_01169	0.29	-1.5
1,285,317	-		MIT1002_01169	0.30	+2.4
1,285,336	+		MIT1002_01169	0.31	+0.3
1,285,363	-		MIT1002_01169	0.32	-1.0
1,285,496	+		MIT1002_01169	0.38	+2.1
1,285,555	-		MIT1002_01169	0.41	-0.8
1,285,637	+		MIT1002_01169	0.44	-1.2
1,285,664	+		MIT1002_01169	0.45	+0.8
1,285,821	+		MIT1002_01169	0.52	-0.6
1,285,829	-		MIT1002_01169	0.53	+0.8
1,285,865	-		MIT1002_01169	0.54	+0.7
1,285,957	+		MIT1002_01169	0.58	+0.1
1,285,974	+		MIT1002_01169	0.59	+0.5
1,285,980	-		MIT1002_01169	0.59	+0.5
1,286,038	-		MIT1002_01169	0.62	+0.2
1,286,048	+		MIT1002_01169	0.62	+0.7
1,286,064	-		MIT1002_01169	0.63	-1.1
1,286,079	-		MIT1002_01169	0.64	+0.6
1,286,142	+		MIT1002_01169	0.67	+0.5
1,286,155	+		MIT1002_01169	0.67	-0.3
1,286,282	-		MIT1002_01169	0.73	-0.2
1,286,307	-		MIT1002_01169	0.74	+2.2
1,286,325	-		MIT1002_01169	0.75	+0.3
1,286,325	-		MIT1002_01169	0.75	+0.7
1,286,396	+		MIT1002_01169	0.78	+1.8
1,286,459	+		MIT1002_01169	0.81	-0.7
1,286,459	+		MIT1002_01169	0.81	-0.9
1,286,467	-		MIT1002_01169	0.81	-0.5
1,286,476	-		MIT1002_01169	0.81	-0.8
1,286,503	+		MIT1002_01169	0.83	-0.4
1,286,508	+		MIT1002_01169	0.83	+1.8
1,286,581	+		MIT1002_01169	0.86	-0.5
1,286,628	+		MIT1002_01169	0.88	-1.9
1,286,636	-		MIT1002_01169	0.88	-1.5
1,286,699	-				-2.8
1,286,720	-				-1.5
1,286,724	+				-0.8
1,286,724	+				-1.1
1,286,807	-				+0.6
1,286,893	-				-0.4
1,286,949	-				+0.4
1,286,974	+				-2.0
1,286,974	+				+2.9
1,287,068	+		MIT1002_01170	0.26	+0.7
1,287,084	-		MIT1002_01170	0.30	-0.8
1,287,142	+		MIT1002_01170	0.43	+0.7
1,287,176	+		MIT1002_01170	0.51	-0.8
1,287,197	+		MIT1002_01170	0.56	+0.9
1,287,200	-		MIT1002_01170	0.57	-1.6
1,287,271	+		MIT1002_01170	0.74	-0.5
1,287,377	+				+2.4
1,287,385	-				+0.6
1,287,398	+				-0.4
1,287,398	+				-2.6
1,287,429	-				-0.4
1,287,444	+				-0.5
1,287,456	+				-0.4
1,287,464	-				-3.1
1,287,464	-				+0.1
1,287,497	+				+0.8
1,287,497	+				-1.3
1,287,505	-				-1.0
1,287,507	+				+0.1
1,287,512	+				-0.1
1,287,519	+				+1.0
1,287,519	+				+1.1
1,287,520	-				-0.7
1,287,527	-				-1.5
1,287,527	-				-1.2
1,287,527	-				+2.1
1,287,564	+				-0.0
1,287,565	+				+0.4
1,287,572	-				-0.0
1,287,610	-				+0.5
1,287,722	-				+0.3
1,287,837	-				+1.9
1,287,890	-		MIT1002_01172	0.10	+2.6
1,287,894	+		MIT1002_01172	0.11	+0.3
1,287,894	+		MIT1002_01172	0.11	+0.1
1,287,894	+		MIT1002_01172	0.11	+0.2