Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01082

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
1,188,727	+		MIT1002_01081	0.50	-0.5
1,188,727	+		MIT1002_01081	0.50	+1.7
1,188,735	-		MIT1002_01081	0.51	-0.7
1,188,737	+		MIT1002_01081	0.51	-1.5
1,188,756	+		MIT1002_01081	0.52	+0.9
1,188,886	+		MIT1002_01081	0.61	-2.0
1,188,886	+		MIT1002_01081	0.61	-0.0
1,188,894	-		MIT1002_01081	0.61	-1.6
1,188,909	+		MIT1002_01081	0.62	-0.4
1,188,948	+		MIT1002_01081	0.65	+0.5
1,188,962	+		MIT1002_01081	0.66	-0.9
1,188,962	+		MIT1002_01081	0.66	-0.7
1,188,970	-		MIT1002_01081	0.67	-0.9
1,189,000	+		MIT1002_01081	0.69	+1.3
1,189,008	-		MIT1002_01081	0.69	-0.0
1,189,075	-		MIT1002_01081	0.74	-0.6
1,189,085	-		MIT1002_01081	0.75	+1.1
1,189,085	-		MIT1002_01081	0.75	-1.0
1,189,123	+		MIT1002_01081	0.77	+0.2
1,189,123	+		MIT1002_01081	0.77	+0.8
1,189,123	+		MIT1002_01081	0.77	-0.6
1,189,131	-		MIT1002_01081	0.78	+1.3
1,189,131	-		MIT1002_01081	0.78	-0.9
1,189,177	-		MIT1002_01081	0.81	+0.5
1,189,256	-		MIT1002_01081	0.86	-1.8
1,189,304	+		MIT1002_01081	0.89	+0.1
1,189,349	-				-2.4
1,189,349	-				-1.2
1,189,399	+				+0.5
1,189,407	-				-0.4
1,189,407	-				+1.9
1,189,441	+				+0.0
1,189,460	-				+0.9
1,189,587	+				+0.2
1,189,612	+				+0.1
1,189,613	-				-1.7
1,189,614	+				+1.0
1,189,621	+				+1.0
1,189,626	+				-1.2
1,189,629	-				-0.5
1,189,629	-				+0.6
1,189,629	-				-1.1
1,189,629	-				-0.4
1,189,641	-				+0.9
1,189,641	-				-0.7
1,189,681	+				-1.9
1,189,698	-				-0.0
1,189,700	+				+1.4
1,189,736	+		MIT1002_01082	0.12	+2.0
1,189,738	+		MIT1002_01082	0.13	-0.6
1,189,756	-		MIT1002_01082	0.14	+0.6
1,189,873	-		MIT1002_01082	0.24	-1.5
1,189,873	-		MIT1002_01082	0.24	+1.7
1,189,880	+		MIT1002_01082	0.25	-1.3
1,189,888	-		MIT1002_01082	0.26	-0.2
1,189,888	-		MIT1002_01082	0.26	-1.4
1,189,888	-		MIT1002_01082	0.26	-1.3
1,189,888	-		MIT1002_01082	0.26	-0.8
1,189,888	-		MIT1002_01082	0.26	-0.1
1,189,888	-		MIT1002_01082	0.26	+0.4
1,189,895	-		MIT1002_01082	0.26	-1.1
1,190,030	+		MIT1002_01082	0.38	-0.4
1,190,038	-		MIT1002_01082	0.39	-0.9
1,190,038	-		MIT1002_01082	0.39	-1.2
1,190,107	+		MIT1002_01082	0.45	-0.6
1,190,107	+		MIT1002_01082	0.45	-1.6
1,190,115	-		MIT1002_01082	0.46	+1.4
1,190,189	+		MIT1002_01082	0.52	-1.1
1,190,197	-		MIT1002_01082	0.53	-1.6
1,190,197	-		MIT1002_01082	0.53	+0.8
1,190,211	+		MIT1002_01082	0.54	-1.9
1,190,226	+		MIT1002_01082	0.55	-0.1
1,190,305	+		MIT1002_01082	0.62	-0.7
1,190,381	+		MIT1002_01082	0.69	-0.3
1,190,475	-		MIT1002_01082	0.77	-0.5
1,190,584	+		MIT1002_01082	0.87	-0.8
1,190,584	+		MIT1002_01082	0.87	+1.5
1,190,585	+		MIT1002_01082	0.87	-3.5
1,190,591	+		MIT1002_01082	0.87	+0.9
1,190,599	-		MIT1002_01082	0.88	-1.9
1,190,601	+		MIT1002_01082	0.88	-1.4
1,190,601	+		MIT1002_01082	0.88	+0.1
1,190,601	+		MIT1002_01082	0.88	-0.8
1,190,629	+				-1.1
1,190,687	-				-2.2
1,190,709	-				+1.3
1,190,725	-				-1.3
1,190,736	+				-1.1
1,190,736	+				-1.6
1,190,736	+				-1.5
1,190,736	+				-1.9
1,190,736	+				+0.2
1,190,736	+				-0.7
1,190,736	+				-2.4
1,190,744	-				+0.6
1,190,744	-				-0.1
1,190,744	-				-0.8
1,190,792	+				-0.8
1,190,800	-				-2.2
1,190,800	-				+0.3
1,190,800	-				-2.1
1,190,807	+				+0.6
1,190,807	+				-0.3
1,190,807	+				-0.1
1,190,815	-				-1.0
1,190,861	+				-0.4
1,190,937	+		MIT1002_01083	0.14	+2.2
1,190,945	-		MIT1002_01083	0.14	+0.2
1,190,945	-		MIT1002_01083	0.14	-0.1
1,190,947	+		MIT1002_01083	0.14	-0.9
1,190,997	-		MIT1002_01083	0.18	+1.0
1,190,999	+		MIT1002_01083	0.18	-1.8
1,191,017	-		MIT1002_01083	0.20	-0.7
1,191,042	+		MIT1002_01083	0.22	-1.5
1,191,176	-		MIT1002_01083	0.32	-1.6
1,191,244	-		MIT1002_01083	0.37	-1.8
1,191,290	-		MIT1002_01083	0.40	+0.4
1,191,365	+		MIT1002_01083	0.46	+1.1
1,191,370	+		MIT1002_01083	0.46	+0.9
1,191,380	+		MIT1002_01083	0.47	-0.9
1,191,383	-		MIT1002_01083	0.47	-0.8
1,191,410	+		MIT1002_01083	0.49	+1.5
1,191,410	+		MIT1002_01083	0.49	-1.5
1,191,418	-		MIT1002_01083	0.50	+0.3
1,191,605	+		MIT1002_01083	0.64	+1.4
1,191,626	-		MIT1002_01083	0.65	-2.7
1,191,714	-		MIT1002_01083	0.72	-0.1
1,191,719	+		MIT1002_01083	0.72	-0.5