Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00850 and MIT1002_00851 overlap by 19 nucleotides MIT1002_00851 and MIT1002_00853 are separated by 10 nucleotides MIT1002_00853 and MIT1002_00854 are separated by 334 nucleotides
MIT1002_00850: MIT1002_00850 - potassium/proton antiporter, at 931,683 to 933,146
_00850
MIT1002_00851: MIT1002_00851 - hypothetical protein, at 933,128 to 933,592
_00851
MIT1002_00853: MIT1002_00853 - hypothetical protein, at 933,603 to 936,077
_00853
MIT1002_00854: MIT1002_00854 - aromatic amino acid exporter, at 936,412 to 937,344
_00854
Position (kb) 933
934
935
936
937 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 932.715 kb on - strand, within MIT1002_00850 at 932.818 kb on + strand, within MIT1002_00850 at 932.828 kb on + strand, within MIT1002_00850 at 932.828 kb on + strand, within MIT1002_00850 at 932.912 kb on - strand, within MIT1002_00850 at 932.920 kb on - strand, within MIT1002_00850 at 932.931 kb on - strand, within MIT1002_00850 at 932.931 kb on - strand, within MIT1002_00850 at 932.940 kb on - strand, within MIT1002_00850 at 932.963 kb on + strand, within MIT1002_00850 at 932.971 kb on - strand, within MIT1002_00850 at 933.042 kb on - strand at 933.042 kb on - strand at 933.124 kb on + strand at 933.136 kb on + strand at 933.140 kb on + strand at 933.144 kb on - strand at 933.148 kb on + strand at 933.637 kb on + strand at 933.637 kb on + strand at 933.637 kb on + strand at 933.645 kb on - strand at 933.735 kb on + strand at 933.743 kb on - strand at 933.774 kb on + strand at 933.789 kb on + strand at 933.891 kb on + strand, within MIT1002_00853 at 933.896 kb on + strand, within MIT1002_00853 at 933.918 kb on - strand, within MIT1002_00853 at 933.918 kb on - strand, within MIT1002_00853 at 933.928 kb on - strand, within MIT1002_00853 at 933.954 kb on + strand, within MIT1002_00853 at 933.973 kb on - strand, within MIT1002_00853 at 934.041 kb on + strand, within MIT1002_00853 at 934.049 kb on - strand, within MIT1002_00853 at 934.049 kb on - strand, within MIT1002_00853 at 934.049 kb on - strand, within MIT1002_00853 at 934.111 kb on - strand, within MIT1002_00853 at 934.124 kb on + strand, within MIT1002_00853 at 934.145 kb on + strand, within MIT1002_00853 at 934.159 kb on + strand, within MIT1002_00853 at 934.159 kb on + strand, within MIT1002_00853 at 934.181 kb on + strand, within MIT1002_00853 at 934.189 kb on - strand, within MIT1002_00853 at 934.193 kb on + strand, within MIT1002_00853 at 934.219 kb on + strand, within MIT1002_00853 at 934.260 kb on + strand, within MIT1002_00853 at 934.260 kb on + strand, within MIT1002_00853 at 934.263 kb on - strand, within MIT1002_00853 at 934.369 kb on + strand, within MIT1002_00853 at 934.369 kb on + strand, within MIT1002_00853 at 934.377 kb on - strand, within MIT1002_00853 at 934.386 kb on - strand, within MIT1002_00853 at 934.386 kb on - strand, within MIT1002_00853 at 934.386 kb on - strand, within MIT1002_00853 at 934.417 kb on + strand, within MIT1002_00853 at 934.456 kb on + strand, within MIT1002_00853 at 934.464 kb on - strand, within MIT1002_00853 at 934.469 kb on - strand, within MIT1002_00853 at 934.628 kb on - strand, within MIT1002_00853 at 934.646 kb on + strand, within MIT1002_00853 at 934.663 kb on + strand, within MIT1002_00853 at 934.767 kb on - strand, within MIT1002_00853 at 934.790 kb on + strand, within MIT1002_00853 at 934.790 kb on + strand, within MIT1002_00853 at 934.790 kb on + strand, within MIT1002_00853 at 934.790 kb on + strand, within MIT1002_00853 at 934.798 kb on - strand, within MIT1002_00853 at 934.798 kb on - strand, within MIT1002_00853 at 934.798 kb on - strand, within MIT1002_00853 at 934.798 kb on - strand, within MIT1002_00853 at 934.845 kb on - strand, within MIT1002_00853 at 934.856 kb on + strand, within MIT1002_00853 at 934.856 kb on + strand, within MIT1002_00853 at 934.864 kb on - strand, within MIT1002_00853 at 934.866 kb on + strand, within MIT1002_00853 at 934.910 kb on - strand, within MIT1002_00853 at 934.958 kb on - strand, within MIT1002_00853 at 935.004 kb on - strand, within MIT1002_00853 at 935.009 kb on - strand, within MIT1002_00853 at 935.110 kb on - strand, within MIT1002_00853 at 935.140 kb on + strand, within MIT1002_00853 at 935.140 kb on + strand, within MIT1002_00853 at 935.140 kb on + strand, within MIT1002_00853 at 935.140 kb on + strand, within MIT1002_00853 at 935.140 kb on + strand, within MIT1002_00853 at 935.140 kb on + strand, within MIT1002_00853 at 935.140 kb on + strand, within MIT1002_00853 at 935.140 kb on + strand, within MIT1002_00853 at 935.140 kb on + strand, within MIT1002_00853 at 935.148 kb on - strand, within MIT1002_00853 at 935.148 kb on - strand, within MIT1002_00853 at 935.148 kb on - strand, within MIT1002_00853 at 935.148 kb on - strand, within MIT1002_00853 at 935.148 kb on - strand, within MIT1002_00853 at 935.148 kb on - strand, within MIT1002_00853 at 935.148 kb on - strand, within MIT1002_00853 at 935.148 kb on - strand, within MIT1002_00853 at 935.148 kb on - strand, within MIT1002_00853 at 935.148 kb on - strand, within MIT1002_00853 at 935.148 kb on - strand, within MIT1002_00853 at 935.148 kb on - strand, within MIT1002_00853 at 935.168 kb on - strand, within MIT1002_00853 at 935.206 kb on + strand, within MIT1002_00853 at 935.221 kb on - strand, within MIT1002_00853 at 935.224 kb on + strand, within MIT1002_00853 at 935.231 kb on + strand, within MIT1002_00853 at 935.232 kb on - strand, within MIT1002_00853 at 935.258 kb on - strand, within MIT1002_00853 at 935.272 kb on + strand, within MIT1002_00853 at 935.318 kb on - strand, within MIT1002_00853 at 935.336 kb on - strand, within MIT1002_00853 at 935.360 kb on - strand, within MIT1002_00853 at 935.360 kb on - strand, within MIT1002_00853 at 935.369 kb on + strand, within MIT1002_00853 at 935.404 kb on + strand, within MIT1002_00853 at 935.404 kb on + strand, within MIT1002_00853 at 935.404 kb on + strand, within MIT1002_00853 at 935.404 kb on + strand, within MIT1002_00853 at 935.404 kb on + strand, within MIT1002_00853 at 935.404 kb on + strand, within MIT1002_00853 at 935.412 kb on - strand, within MIT1002_00853 at 935.412 kb on - strand, within MIT1002_00853 at 935.412 kb on - strand, within MIT1002_00853 at 935.412 kb on - strand, within MIT1002_00853 at 935.452 kb on + strand, within MIT1002_00853 at 935.522 kb on + strand, within MIT1002_00853 at 935.561 kb on - strand, within MIT1002_00853 at 935.585 kb on - strand, within MIT1002_00853 at 935.638 kb on + strand, within MIT1002_00853 at 935.641 kb on - strand, within MIT1002_00853 at 935.667 kb on + strand, within MIT1002_00853 at 935.687 kb on + strand, within MIT1002_00853 at 935.708 kb on - strand, within MIT1002_00853 at 935.720 kb on - strand, within MIT1002_00853 at 935.720 kb on - strand, within MIT1002_00853 at 935.731 kb on - strand, within MIT1002_00853 at 935.768 kb on + strand, within MIT1002_00853 at 935.864 kb on - strand at 935.879 kb on + strand at 935.910 kb on + strand at 935.918 kb on + strand at 935.918 kb on - strand at 935.937 kb on - strand at 935.937 kb on - strand at 935.996 kb on + strand at 936.111 kb on + strand at 936.111 kb on + strand at 936.119 kb on - strand at 936.119 kb on - strand at 936.119 kb on - strand at 936.119 kb on - strand at 936.241 kb on - strand at 936.241 kb on - strand at 936.248 kb on + strand at 936.251 kb on - strand at 936.311 kb on - strand at 936.311 kb on - strand at 936.355 kb on + strand at 936.355 kb on + strand at 936.365 kb on + strand at 936.373 kb on - strand at 936.373 kb on - strand at 936.392 kb on + strand at 936.473 kb on + strand at 936.540 kb on + strand, within MIT1002_00854 at 936.540 kb on + strand, within MIT1002_00854 at 936.548 kb on - strand, within MIT1002_00854 at 936.548 kb on - strand, within MIT1002_00854 at 936.548 kb on - strand, within MIT1002_00854 at 936.549 kb on - strand, within MIT1002_00854 at 936.549 kb on - strand, within MIT1002_00854 at 936.559 kb on - strand, within MIT1002_00854 at 936.559 kb on - strand, within MIT1002_00854 at 936.559 kb on - strand, within MIT1002_00854 at 936.583 kb on + strand, within MIT1002_00854 at 936.616 kb on + strand, within MIT1002_00854 at 936.616 kb on + strand, within MIT1002_00854 at 936.616 kb on + strand, within MIT1002_00854 at 936.623 kb on + strand, within MIT1002_00854 at 936.624 kb on - strand, within MIT1002_00854 at 936.664 kb on + strand, within MIT1002_00854 at 936.697 kb on + strand, within MIT1002_00854 at 936.705 kb on - strand, within MIT1002_00854 at 936.705 kb on - strand, within MIT1002_00854 at 936.712 kb on - strand, within MIT1002_00854 at 936.738 kb on - strand, within MIT1002_00854 at 936.738 kb on - strand, within MIT1002_00854 at 936.901 kb on - strand, within MIT1002_00854 at 936.931 kb on + strand, within MIT1002_00854 at 936.931 kb on + strand, within MIT1002_00854 at 936.931 kb on + strand, within MIT1002_00854 at 936.944 kb on - strand, within MIT1002_00854 at 937.015 kb on - strand, within MIT1002_00854 at 937.021 kb on - strand, within MIT1002_00854
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5 remove 932,715 - MIT1002_00850 0.70 +0.4 932,818 + MIT1002_00850 0.78 +0.3 932,828 + MIT1002_00850 0.78 -1.8 932,828 + MIT1002_00850 0.78 -0.0 932,912 - MIT1002_00850 0.84 +0.6 932,920 - MIT1002_00850 0.84 +1.8 932,931 - MIT1002_00850 0.85 +0.4 932,931 - MIT1002_00850 0.85 -0.4 932,940 - MIT1002_00850 0.86 -0.5 932,963 + MIT1002_00850 0.87 -0.9 932,971 - MIT1002_00850 0.88 +1.2 933,042 - -0.7 933,042 - +0.9 933,124 + -0.2 933,136 + +0.2 933,140 + -0.2 933,144 - +0.4 933,148 + -0.7 933,637 + -0.9 933,637 + +0.8 933,637 + -0.0 933,645 - +1.7 933,735 + +0.4 933,743 - -3.4 933,774 + -0.1 933,789 + +0.1 933,891 + MIT1002_00853 0.12 -0.6 933,896 + MIT1002_00853 0.12 -0.9 933,918 - MIT1002_00853 0.13 +0.2 933,918 - MIT1002_00853 0.13 -1.2 933,928 - MIT1002_00853 0.13 +0.1 933,954 + MIT1002_00853 0.14 -1.3 933,973 - MIT1002_00853 0.15 +0.0 934,041 + MIT1002_00853 0.18 -0.7 934,049 - MIT1002_00853 0.18 +1.2 934,049 - MIT1002_00853 0.18 +0.5 934,049 - MIT1002_00853 0.18 -0.1 934,111 - MIT1002_00853 0.21 -2.0 934,124 + MIT1002_00853 0.21 -0.0 934,145 + MIT1002_00853 0.22 +0.1 934,159 + MIT1002_00853 0.22 -1.5 934,159 + MIT1002_00853 0.22 +2.7 934,181 + MIT1002_00853 0.23 -1.3 934,189 - MIT1002_00853 0.24 +1.3 934,193 + MIT1002_00853 0.24 +0.0 934,219 + MIT1002_00853 0.25 +2.3 934,260 + MIT1002_00853 0.27 -1.3 934,260 + MIT1002_00853 0.27 -0.5 934,263 - MIT1002_00853 0.27 -1.4 934,369 + MIT1002_00853 0.31 +0.4 934,369 + MIT1002_00853 0.31 +1.5 934,377 - MIT1002_00853 0.31 +0.2 934,386 - MIT1002_00853 0.32 +0.7 934,386 - MIT1002_00853 0.32 +0.4 934,386 - MIT1002_00853 0.32 -0.7 934,417 + MIT1002_00853 0.33 +0.0 934,456 + MIT1002_00853 0.34 -1.4 934,464 - MIT1002_00853 0.35 +0.4 934,469 - MIT1002_00853 0.35 -1.1 934,628 - MIT1002_00853 0.41 -1.8 934,646 + MIT1002_00853 0.42 +2.0 934,663 + MIT1002_00853 0.43 -0.3 934,767 - MIT1002_00853 0.47 +0.8 934,790 + MIT1002_00853 0.48 +1.2 934,790 + MIT1002_00853 0.48 -1.4 934,790 + MIT1002_00853 0.48 -1.7 934,790 + MIT1002_00853 0.48 +0.4 934,798 - MIT1002_00853 0.48 +0.4 934,798 - MIT1002_00853 0.48 -1.1 934,798 - MIT1002_00853 0.48 -1.6 934,798 - MIT1002_00853 0.48 -0.0 934,845 - MIT1002_00853 0.50 -1.6 934,856 + MIT1002_00853 0.51 +0.3 934,856 + MIT1002_00853 0.51 -1.0 934,864 - MIT1002_00853 0.51 +0.0 934,866 + MIT1002_00853 0.51 +0.3 934,910 - MIT1002_00853 0.53 -0.7 934,958 - MIT1002_00853 0.55 -1.0 935,004 - MIT1002_00853 0.57 +0.2 935,009 - MIT1002_00853 0.57 -0.5 935,110 - MIT1002_00853 0.61 +0.7 935,140 + MIT1002_00853 0.62 +1.0 935,140 + MIT1002_00853 0.62 -0.4 935,140 + MIT1002_00853 0.62 +1.6 935,140 + MIT1002_00853 0.62 +0.8 935,140 + MIT1002_00853 0.62 -1.9 935,140 + MIT1002_00853 0.62 +0.8 935,140 + MIT1002_00853 0.62 +2.0 935,140 + MIT1002_00853 0.62 -0.6 935,140 + MIT1002_00853 0.62 -0.2 935,148 - MIT1002_00853 0.62 -0.8 935,148 - MIT1002_00853 0.62 +0.3 935,148 - MIT1002_00853 0.62 +0.0 935,148 - MIT1002_00853 0.62 -1.2 935,148 - MIT1002_00853 0.62 +0.2 935,148 - MIT1002_00853 0.62 -1.0 935,148 - MIT1002_00853 0.62 +0.2 935,148 - MIT1002_00853 0.62 +0.9 935,148 - MIT1002_00853 0.62 -1.0 935,148 - MIT1002_00853 0.62 -1.7 935,148 - MIT1002_00853 0.62 +0.3 935,148 - MIT1002_00853 0.62 -0.8 935,168 - MIT1002_00853 0.63 +1.7 935,206 + MIT1002_00853 0.65 -0.9 935,221 - MIT1002_00853 0.65 -2.6 935,224 + MIT1002_00853 0.65 -1.7 935,231 + MIT1002_00853 0.66 +0.6 935,232 - MIT1002_00853 0.66 -1.8 935,258 - MIT1002_00853 0.67 -1.4 935,272 + MIT1002_00853 0.67 -1.6 935,318 - MIT1002_00853 0.69 -0.1 935,336 - MIT1002_00853 0.70 +1.7 935,360 - MIT1002_00853 0.71 -1.6 935,360 - MIT1002_00853 0.71 -0.3 935,369 + MIT1002_00853 0.71 -0.2 935,404 + MIT1002_00853 0.73 +1.8 935,404 + MIT1002_00853 0.73 -0.8 935,404 + MIT1002_00853 0.73 +0.5 935,404 + MIT1002_00853 0.73 -0.4 935,404 + MIT1002_00853 0.73 -0.7 935,404 + MIT1002_00853 0.73 +0.6 935,412 - MIT1002_00853 0.73 +0.2 935,412 - MIT1002_00853 0.73 +0.2 935,412 - MIT1002_00853 0.73 +0.0 935,412 - MIT1002_00853 0.73 +3.3 935,452 + MIT1002_00853 0.75 +0.7 935,522 + MIT1002_00853 0.78 -1.7 935,561 - MIT1002_00853 0.79 -0.0 935,585 - MIT1002_00853 0.80 +0.2 935,638 + MIT1002_00853 0.82 +2.3 935,641 - MIT1002_00853 0.82 +1.3 935,667 + MIT1002_00853 0.83 -1.6 935,687 + MIT1002_00853 0.84 +0.0 935,708 - MIT1002_00853 0.85 +0.3 935,720 - MIT1002_00853 0.86 -1.4 935,720 - MIT1002_00853 0.86 -1.4 935,731 - MIT1002_00853 0.86 -2.3 935,768 + MIT1002_00853 0.87 +0.4 935,864 - +1.0 935,879 + -0.3 935,910 + +0.4 935,918 + -0.1 935,918 - -1.1 935,937 - -0.2 935,937 - +0.6 935,996 + -0.3 936,111 + -0.5 936,111 + +1.7 936,119 - +1.4 936,119 - -0.8 936,119 - -0.8 936,119 - +2.3 936,241 - +1.1 936,241 - -2.6 936,248 + +0.2 936,251 - -0.2 936,311 - -0.7 936,311 - -1.0 936,355 + -0.4 936,355 + +3.9 936,365 + +3.0 936,373 - -0.5 936,373 - +2.5 936,392 + -0.5 936,473 + +0.2 936,540 + MIT1002_00854 0.14 +0.4 936,540 + MIT1002_00854 0.14 +0.7 936,548 - MIT1002_00854 0.15 +1.0 936,548 - MIT1002_00854 0.15 -0.2 936,548 - MIT1002_00854 0.15 +1.0 936,549 - MIT1002_00854 0.15 +0.8 936,549 - MIT1002_00854 0.15 -1.0 936,559 - MIT1002_00854 0.16 -1.6 936,559 - MIT1002_00854 0.16 +0.6 936,559 - MIT1002_00854 0.16 +0.9 936,583 + MIT1002_00854 0.18 +0.6 936,616 + MIT1002_00854 0.22 +0.3 936,616 + MIT1002_00854 0.22 -3.2 936,616 + MIT1002_00854 0.22 -0.1 936,623 + MIT1002_00854 0.23 -1.6 936,624 - MIT1002_00854 0.23 -0.4 936,664 + MIT1002_00854 0.27 -1.0 936,697 + MIT1002_00854 0.31 +0.6 936,705 - MIT1002_00854 0.31 -0.6 936,705 - MIT1002_00854 0.31 +0.3 936,712 - MIT1002_00854 0.32 +0.4 936,738 - MIT1002_00854 0.35 -2.2 936,738 - MIT1002_00854 0.35 -0.6 936,901 - MIT1002_00854 0.52 -1.1 936,931 + MIT1002_00854 0.56 +0.7 936,931 + MIT1002_00854 0.56 -0.0 936,931 + MIT1002_00854 0.56 +1.3 936,944 - MIT1002_00854 0.57 -0.7 937,015 - MIT1002_00854 0.65 -0.9 937,021 - MIT1002_00854 0.65 +1.2
Or see this region's nucleotide sequence