Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00809 and MIT1002_00810 are separated by 1 nucleotides MIT1002_00810 and MIT1002_00811 are separated by 75 nucleotides
MIT1002_00809: MIT1002_00809 - Sensor protein QseC, at 894,991 to 896,280
_00809
MIT1002_00810: MIT1002_00810 - Transcriptional regulatory protein BasR, at 896,282 to 896,947
_00810
MIT1002_00811: MIT1002_00811 - hypothetical protein, at 897,023 to 897,895
_00811
Position (kb) 896
897 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 895.297 kb on + strand, within MIT1002_00809 at 895.297 kb on + strand, within MIT1002_00809 at 895.305 kb on - strand, within MIT1002_00809 at 895.309 kb on + strand, within MIT1002_00809 at 895.312 kb on + strand, within MIT1002_00809 at 895.323 kb on + strand, within MIT1002_00809 at 895.403 kb on + strand, within MIT1002_00809 at 895.461 kb on + strand, within MIT1002_00809 at 895.469 kb on - strand, within MIT1002_00809 at 895.526 kb on + strand, within MIT1002_00809 at 895.526 kb on + strand, within MIT1002_00809 at 895.526 kb on + strand, within MIT1002_00809 at 895.526 kb on + strand, within MIT1002_00809 at 895.534 kb on - strand, within MIT1002_00809 at 895.610 kb on + strand, within MIT1002_00809 at 895.618 kb on - strand, within MIT1002_00809 at 895.618 kb on - strand, within MIT1002_00809 at 895.618 kb on - strand, within MIT1002_00809 at 895.618 kb on - strand, within MIT1002_00809 at 895.618 kb on - strand, within MIT1002_00809 at 895.664 kb on + strand, within MIT1002_00809 at 895.672 kb on - strand, within MIT1002_00809 at 895.672 kb on - strand, within MIT1002_00809 at 895.685 kb on + strand, within MIT1002_00809 at 895.693 kb on - strand, within MIT1002_00809 at 895.695 kb on - strand, within MIT1002_00809 at 895.697 kb on + strand, within MIT1002_00809 at 895.704 kb on - strand, within MIT1002_00809 at 895.729 kb on + strand, within MIT1002_00809 at 895.811 kb on - strand, within MIT1002_00809 at 895.917 kb on - strand, within MIT1002_00809 at 895.926 kb on + strand, within MIT1002_00809 at 895.926 kb on + strand, within MIT1002_00809 at 895.983 kb on - strand, within MIT1002_00809 at 895.984 kb on - strand, within MIT1002_00809 at 895.984 kb on - strand, within MIT1002_00809 at 896.020 kb on + strand, within MIT1002_00809 at 896.020 kb on - strand, within MIT1002_00809 at 896.028 kb on - strand, within MIT1002_00809 at 896.028 kb on - strand, within MIT1002_00809 at 896.028 kb on - strand, within MIT1002_00809 at 896.028 kb on - strand, within MIT1002_00809 at 896.051 kb on - strand, within MIT1002_00809 at 896.143 kb on - strand, within MIT1002_00809 at 896.143 kb on - strand, within MIT1002_00809 at 896.143 kb on - strand, within MIT1002_00809 at 896.171 kb on + strand at 896.190 kb on - strand at 896.202 kb on - strand at 896.208 kb on - strand at 896.245 kb on - strand at 896.323 kb on - strand at 896.374 kb on + strand, within MIT1002_00810 at 896.374 kb on + strand, within MIT1002_00810 at 896.441 kb on - strand, within MIT1002_00810 at 896.531 kb on + strand, within MIT1002_00810 at 896.596 kb on - strand, within MIT1002_00810 at 896.596 kb on - strand, within MIT1002_00810 at 896.608 kb on + strand, within MIT1002_00810 at 896.616 kb on - strand, within MIT1002_00810 at 896.644 kb on + strand, within MIT1002_00810 at 896.664 kb on - strand, within MIT1002_00810 at 896.697 kb on + strand, within MIT1002_00810 at 896.720 kb on - strand, within MIT1002_00810 at 896.786 kb on - strand, within MIT1002_00810 at 896.868 kb on + strand, within MIT1002_00810 at 896.896 kb on + strand at 896.904 kb on - strand at 896.912 kb on - strand at 896.936 kb on + strand at 896.936 kb on + strand at 897.013 kb on + strand at 897.013 kb on - strand at 897.020 kb on + strand at 897.070 kb on + strand at 897.076 kb on - strand at 897.105 kb on + strand at 897.175 kb on + strand, within MIT1002_00811 at 897.183 kb on - strand, within MIT1002_00811 at 897.220 kb on - strand, within MIT1002_00811 at 897.229 kb on + strand, within MIT1002_00811 at 897.261 kb on - strand, within MIT1002_00811 at 897.283 kb on + strand, within MIT1002_00811 at 897.288 kb on + strand, within MIT1002_00811 at 897.308 kb on + strand, within MIT1002_00811 at 897.316 kb on + strand, within MIT1002_00811 at 897.316 kb on + strand, within MIT1002_00811 at 897.321 kb on + strand, within MIT1002_00811 at 897.417 kb on - strand, within MIT1002_00811 at 897.423 kb on + strand, within MIT1002_00811 at 897.446 kb on - strand, within MIT1002_00811 at 897.456 kb on + strand, within MIT1002_00811 at 897.458 kb on - strand, within MIT1002_00811 at 897.459 kb on - strand, within MIT1002_00811 at 897.503 kb on + strand, within MIT1002_00811 at 897.531 kb on - strand, within MIT1002_00811 at 897.706 kb on - strand, within MIT1002_00811 at 897.706 kb on - strand, within MIT1002_00811 at 897.739 kb on + strand, within MIT1002_00811 at 897.739 kb on + strand, within MIT1002_00811 at 897.739 kb on + strand, within MIT1002_00811 at 897.739 kb on + strand, within MIT1002_00811 at 897.756 kb on + strand, within MIT1002_00811 at 897.783 kb on + strand, within MIT1002_00811 at 897.788 kb on + strand, within MIT1002_00811 at 897.788 kb on + strand, within MIT1002_00811 at 897.796 kb on - strand, within MIT1002_00811 at 897.834 kb on + strand at 897.836 kb on + strand at 897.840 kb on - strand at 897.842 kb on - strand at 897.850 kb on - strand at 897.855 kb on + strand at 897.856 kb on + strand at 897.871 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5 remove 895,297 + MIT1002_00809 0.24 -2.0 895,297 + MIT1002_00809 0.24 -2.2 895,305 - MIT1002_00809 0.24 -2.0 895,309 + MIT1002_00809 0.25 +0.2 895,312 + MIT1002_00809 0.25 -2.2 895,323 + MIT1002_00809 0.26 -1.8 895,403 + MIT1002_00809 0.32 -1.7 895,461 + MIT1002_00809 0.36 -3.4 895,469 - MIT1002_00809 0.37 -3.3 895,526 + MIT1002_00809 0.41 -4.6 895,526 + MIT1002_00809 0.41 -8.7 895,526 + MIT1002_00809 0.41 -3.1 895,526 + MIT1002_00809 0.41 -4.3 895,534 - MIT1002_00809 0.42 -3.3 895,610 + MIT1002_00809 0.48 -2.2 895,618 - MIT1002_00809 0.49 -0.2 895,618 - MIT1002_00809 0.49 -3.1 895,618 - MIT1002_00809 0.49 -2.7 895,618 - MIT1002_00809 0.49 -2.2 895,618 - MIT1002_00809 0.49 -3.7 895,664 + MIT1002_00809 0.52 -3.1 895,672 - MIT1002_00809 0.53 -1.8 895,672 - MIT1002_00809 0.53 -1.1 895,685 + MIT1002_00809 0.54 -3.5 895,693 - MIT1002_00809 0.54 -2.1 895,695 - MIT1002_00809 0.55 -0.9 895,697 + MIT1002_00809 0.55 +1.0 895,704 - MIT1002_00809 0.55 -2.6 895,729 + MIT1002_00809 0.57 -5.1 895,811 - MIT1002_00809 0.64 -3.4 895,917 - MIT1002_00809 0.72 -2.6 895,926 + MIT1002_00809 0.72 +0.7 895,926 + MIT1002_00809 0.72 -0.5 895,983 - MIT1002_00809 0.77 -0.2 895,984 - MIT1002_00809 0.77 -1.7 895,984 - MIT1002_00809 0.77 -1.0 896,020 + MIT1002_00809 0.80 -4.6 896,020 - MIT1002_00809 0.80 -5.8 896,028 - MIT1002_00809 0.80 -0.7 896,028 - MIT1002_00809 0.80 -1.2 896,028 - MIT1002_00809 0.80 -2.4 896,028 - MIT1002_00809 0.80 -4.6 896,051 - MIT1002_00809 0.82 -1.9 896,143 - MIT1002_00809 0.89 -2.1 896,143 - MIT1002_00809 0.89 -0.2 896,143 - MIT1002_00809 0.89 -1.6 896,171 + -3.1 896,190 - -3.9 896,202 - -1.2 896,208 - -2.8 896,245 - -8.0 896,323 - +0.2 896,374 + MIT1002_00810 0.14 +0.1 896,374 + MIT1002_00810 0.14 -0.7 896,441 - MIT1002_00810 0.24 +0.1 896,531 + MIT1002_00810 0.37 -0.8 896,596 - MIT1002_00810 0.47 -0.0 896,596 - MIT1002_00810 0.47 +2.0 896,608 + MIT1002_00810 0.49 +0.9 896,616 - MIT1002_00810 0.50 +0.8 896,644 + MIT1002_00810 0.54 +1.0 896,664 - MIT1002_00810 0.57 +1.0 896,697 + MIT1002_00810 0.62 -1.1 896,720 - MIT1002_00810 0.66 +0.9 896,786 - MIT1002_00810 0.76 +1.5 896,868 + MIT1002_00810 0.88 +1.0 896,896 + -0.9 896,904 - -0.5 896,912 - +1.0 896,936 + +1.2 896,936 + +0.8 897,013 + -0.9 897,013 - -0.1 897,020 + -0.3 897,070 + +3.3 897,076 - -0.2 897,105 + +0.9 897,175 + MIT1002_00811 0.17 +1.0 897,183 - MIT1002_00811 0.18 +1.4 897,220 - MIT1002_00811 0.23 +0.2 897,229 + MIT1002_00811 0.24 +2.2 897,261 - MIT1002_00811 0.27 +1.1 897,283 + MIT1002_00811 0.30 +1.1 897,288 + MIT1002_00811 0.30 -0.2 897,308 + MIT1002_00811 0.33 +1.1 897,316 + MIT1002_00811 0.34 -0.2 897,316 + MIT1002_00811 0.34 +1.8 897,321 + MIT1002_00811 0.34 -0.5 897,417 - MIT1002_00811 0.45 -0.6 897,423 + MIT1002_00811 0.46 -1.0 897,446 - MIT1002_00811 0.48 -0.7 897,456 + MIT1002_00811 0.50 +1.5 897,458 - MIT1002_00811 0.50 -0.3 897,459 - MIT1002_00811 0.50 +0.9 897,503 + MIT1002_00811 0.55 -0.1 897,531 - MIT1002_00811 0.58 +0.4 897,706 - MIT1002_00811 0.78 -1.8 897,706 - MIT1002_00811 0.78 +0.6 897,739 + MIT1002_00811 0.82 -1.5 897,739 + MIT1002_00811 0.82 +0.9 897,739 + MIT1002_00811 0.82 -0.6 897,739 + MIT1002_00811 0.82 -0.8 897,756 + MIT1002_00811 0.84 +0.3 897,783 + MIT1002_00811 0.87 +0.3 897,788 + MIT1002_00811 0.88 -0.6 897,788 + MIT1002_00811 0.88 +0.8 897,796 - MIT1002_00811 0.89 +0.5 897,834 + +0.8 897,836 + +0.5 897,840 - +0.5 897,842 - -1.8 897,850 - +2.3 897,855 + -0.9 897,856 + +0.5 897,871 + -1.9
Or see this region's nucleotide sequence