Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00791 and MIT1002_00792 are separated by 27 nucleotides MIT1002_00792 and MIT1002_00793 are separated by 101 nucleotides
MIT1002_00791: MIT1002_00791 - Pyridoxine 5'-phosphate synthase, at 876,433 to 877,170
_00791
MIT1002_00792: MIT1002_00792 - Holo-[acyl-carrier-protein] synthase, at 877,198 to 877,578
_00792
MIT1002_00793: MIT1002_00793 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 877,680 to 879,122
_00793
Position (kb) 877
878 Strain fitness (log2 ratio) -2
-1
0
1
2 at 876.354 kb on + strand at 877.186 kb on + strand at 877.186 kb on + strand at 877.568 kb on + strand at 877.568 kb on + strand at 877.587 kb on + strand at 877.595 kb on - strand at 877.666 kb on - strand at 877.679 kb on - strand at 877.689 kb on - strand at 877.689 kb on - strand at 877.711 kb on + strand at 877.711 kb on + strand at 877.719 kb on - strand at 877.763 kb on + strand at 877.763 kb on + strand at 877.763 kb on - strand at 877.771 kb on - strand at 877.771 kb on - strand at 877.831 kb on - strand, within MIT1002_00793 at 877.853 kb on - strand, within MIT1002_00793 at 877.866 kb on + strand, within MIT1002_00793 at 877.872 kb on + strand, within MIT1002_00793 at 877.874 kb on - strand, within MIT1002_00793 at 877.935 kb on + strand, within MIT1002_00793 at 878.057 kb on + strand, within MIT1002_00793 at 878.064 kb on - strand, within MIT1002_00793 at 878.068 kb on + strand, within MIT1002_00793 at 878.074 kb on + strand, within MIT1002_00793 at 878.081 kb on - strand, within MIT1002_00793 at 878.084 kb on + strand, within MIT1002_00793 at 878.089 kb on + strand, within MIT1002_00793 at 878.095 kb on + strand, within MIT1002_00793 at 878.095 kb on - strand, within MIT1002_00793 at 878.097 kb on + strand, within MIT1002_00793 at 878.131 kb on + strand, within MIT1002_00793 at 878.151 kb on + strand, within MIT1002_00793 at 878.155 kb on + strand, within MIT1002_00793 at 878.195 kb on + strand, within MIT1002_00793 at 878.203 kb on - strand, within MIT1002_00793 at 878.203 kb on - strand, within MIT1002_00793 at 878.212 kb on + strand, within MIT1002_00793 at 878.268 kb on + strand, within MIT1002_00793 at 878.278 kb on + strand, within MIT1002_00793 at 878.278 kb on + strand, within MIT1002_00793 at 878.286 kb on - strand, within MIT1002_00793 at 878.286 kb on - strand, within MIT1002_00793 at 878.317 kb on + strand, within MIT1002_00793 at 878.337 kb on + strand, within MIT1002_00793 at 878.337 kb on - strand, within MIT1002_00793 at 878.339 kb on + strand, within MIT1002_00793 at 878.339 kb on + strand, within MIT1002_00793 at 878.345 kb on - strand, within MIT1002_00793 at 878.347 kb on - strand, within MIT1002_00793 at 878.364 kb on - strand, within MIT1002_00793 at 878.371 kb on + strand, within MIT1002_00793 at 878.392 kb on - strand, within MIT1002_00793 at 878.422 kb on - strand, within MIT1002_00793 at 878.422 kb on - strand, within MIT1002_00793 at 878.423 kb on + strand, within MIT1002_00793 at 878.438 kb on + strand, within MIT1002_00793 at 878.441 kb on - strand, within MIT1002_00793 at 878.574 kb on - strand, within MIT1002_00793 at 878.576 kb on - strand, within MIT1002_00793
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5 remove 876,354 + +1.8 877,186 + -1.3 877,186 + -0.5 877,568 + -1.4 877,568 + -0.1 877,587 + +0.5 877,595 - -0.0 877,666 - +1.2 877,679 - -1.2 877,689 - +1.9 877,689 - -0.6 877,711 + +0.9 877,711 + +1.3 877,719 - -0.9 877,763 + -0.8 877,763 + +0.1 877,763 - +0.2 877,771 - -0.7 877,771 - -0.0 877,831 - MIT1002_00793 0.10 -1.8 877,853 - MIT1002_00793 0.12 -0.6 877,866 + MIT1002_00793 0.13 +0.2 877,872 + MIT1002_00793 0.13 +0.2 877,874 - MIT1002_00793 0.13 -0.2 877,935 + MIT1002_00793 0.18 +0.8 878,057 + MIT1002_00793 0.26 -0.9 878,064 - MIT1002_00793 0.27 -1.4 878,068 + MIT1002_00793 0.27 -2.1 878,074 + MIT1002_00793 0.27 +0.5 878,081 - MIT1002_00793 0.28 +2.5 878,084 + MIT1002_00793 0.28 -0.7 878,089 + MIT1002_00793 0.28 +0.6 878,095 + MIT1002_00793 0.29 -0.3 878,095 - MIT1002_00793 0.29 -1.3 878,097 + MIT1002_00793 0.29 +1.0 878,131 + MIT1002_00793 0.31 +0.5 878,151 + MIT1002_00793 0.33 -0.0 878,155 + MIT1002_00793 0.33 -0.4 878,195 + MIT1002_00793 0.36 +0.2 878,203 - MIT1002_00793 0.36 -1.4 878,203 - MIT1002_00793 0.36 +2.0 878,212 + MIT1002_00793 0.37 -0.2 878,268 + MIT1002_00793 0.41 +1.8 878,278 + MIT1002_00793 0.41 +0.4 878,278 + MIT1002_00793 0.41 +0.9 878,286 - MIT1002_00793 0.42 +0.1 878,286 - MIT1002_00793 0.42 +0.2 878,317 + MIT1002_00793 0.44 -1.0 878,337 + MIT1002_00793 0.46 +0.4 878,337 - MIT1002_00793 0.46 +0.7 878,339 + MIT1002_00793 0.46 +1.1 878,339 + MIT1002_00793 0.46 +2.0 878,345 - MIT1002_00793 0.46 +0.5 878,347 - MIT1002_00793 0.46 -0.5 878,364 - MIT1002_00793 0.47 -0.2 878,371 + MIT1002_00793 0.48 +2.4 878,392 - MIT1002_00793 0.49 -1.7 878,422 - MIT1002_00793 0.51 +0.4 878,422 - MIT1002_00793 0.51 -0.4 878,423 + MIT1002_00793 0.51 -1.8 878,438 + MIT1002_00793 0.53 +0.8 878,441 - MIT1002_00793 0.53 +0.5 878,574 - MIT1002_00793 0.62 -0.7 878,576 - MIT1002_00793 0.62 -1.6
Or see this region's nucleotide sequence