Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00718

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00716 and MIT1002_00718 are separated by 459 nucleotidesMIT1002_00718 and MIT1002_00719 overlap by 4 nucleotides MIT1002_00716: MIT1002_00716 - Outer membrane cobalamin translocator, at 782,958 to 784,910 _00716 MIT1002_00718: MIT1002_00718 - serine/threonine protein kinase, at 785,370 to 786,353 _00718 MIT1002_00719: MIT1002_00719 - cytochrome c oxidase accessory protein CcoG, at 786,350 to 787,780 _00719 Position (kb) 785 786 787Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 784.371 kb on + strand, within MIT1002_00716at 784.371 kb on - strand, within MIT1002_00716at 784.385 kb on - strand, within MIT1002_00716at 784.395 kb on + strand, within MIT1002_00716at 784.424 kb on + strand, within MIT1002_00716at 784.427 kb on - strand, within MIT1002_00716at 784.439 kb on - strand, within MIT1002_00716at 784.478 kb on + strand, within MIT1002_00716at 784.493 kb on + strand, within MIT1002_00716at 784.503 kb on + strand, within MIT1002_00716at 784.511 kb on - strand, within MIT1002_00716at 784.530 kb on + strand, within MIT1002_00716at 784.543 kb on - strand, within MIT1002_00716at 784.592 kb on - strand, within MIT1002_00716at 784.619 kb on + strand, within MIT1002_00716at 784.619 kb on + strand, within MIT1002_00716at 784.791 kb on - strandat 784.814 kb on + strandat 784.822 kb on + strandat 784.838 kb on + strandat 784.848 kb on + strandat 784.849 kb on - strandat 784.856 kb on - strandat 784.856 kb on - strandat 784.856 kb on - strandat 784.984 kb on + strandat 784.985 kb on - strandat 784.992 kb on - strandat 785.153 kb on - strandat 785.211 kb on - strandat 785.277 kb on - strandat 785.283 kb on - strandat 785.394 kb on + strandat 785.394 kb on + strandat 785.402 kb on - strandat 785.409 kb on + strandat 785.451 kb on + strandat 785.471 kb on - strand, within MIT1002_00718at 785.500 kb on - strand, within MIT1002_00718at 785.526 kb on - strand, within MIT1002_00718at 785.538 kb on - strand, within MIT1002_00718at 785.548 kb on + strand, within MIT1002_00718at 785.564 kb on + strand, within MIT1002_00718at 785.709 kb on + strand, within MIT1002_00718at 785.724 kb on + strand, within MIT1002_00718at 785.739 kb on - strand, within MIT1002_00718at 785.778 kb on + strand, within MIT1002_00718at 785.817 kb on - strand, within MIT1002_00718at 785.833 kb on + strand, within MIT1002_00718at 785.833 kb on + strand, within MIT1002_00718at 785.833 kb on + strand, within MIT1002_00718at 785.845 kb on + strand, within MIT1002_00718at 785.859 kb on + strand, within MIT1002_00718at 785.968 kb on + strand, within MIT1002_00718at 785.977 kb on + strand, within MIT1002_00718at 785.987 kb on + strand, within MIT1002_00718at 785.995 kb on - strand, within MIT1002_00718at 786.011 kb on + strand, within MIT1002_00718at 786.019 kb on - strand, within MIT1002_00718at 786.064 kb on + strand, within MIT1002_00718at 786.064 kb on + strand, within MIT1002_00718at 786.064 kb on + strand, within MIT1002_00718at 786.064 kb on - strand, within MIT1002_00718at 786.064 kb on - strand, within MIT1002_00718at 786.071 kb on - strand, within MIT1002_00718at 786.077 kb on + strand, within MIT1002_00718at 786.079 kb on + strand, within MIT1002_00718at 786.079 kb on - strand, within MIT1002_00718at 786.081 kb on - strand, within MIT1002_00718at 786.087 kb on - strand, within MIT1002_00718at 786.095 kb on - strand, within MIT1002_00718at 786.101 kb on - strand, within MIT1002_00718at 786.245 kb on + strand, within MIT1002_00718at 786.303 kb on - strandat 786.308 kb on + strandat 786.326 kb on - strandat 786.456 kb on - strandat 786.480 kb on + strandat 786.482 kb on + strandat 786.482 kb on + strandat 786.497 kb on + strand, within MIT1002_00719at 786.506 kb on - strand, within MIT1002_00719at 786.561 kb on + strand, within MIT1002_00719at 786.566 kb on + strand, within MIT1002_00719at 786.574 kb on - strand, within MIT1002_00719at 786.580 kb on + strand, within MIT1002_00719at 786.588 kb on - strand, within MIT1002_00719at 786.588 kb on - strand, within MIT1002_00719at 786.734 kb on - strand, within MIT1002_00719at 786.807 kb on - strand, within MIT1002_00719at 786.807 kb on - strand, within MIT1002_00719at 786.824 kb on - strand, within MIT1002_00719at 786.825 kb on - strand, within MIT1002_00719at 786.864 kb on - strand, within MIT1002_00719at 787.003 kb on + strand, within MIT1002_00719at 787.003 kb on + strand, within MIT1002_00719at 787.003 kb on + strand, within MIT1002_00719at 787.011 kb on - strand, within MIT1002_00719at 787.011 kb on - strand, within MIT1002_00719at 787.011 kb on - strand, within MIT1002_00719at 787.055 kb on - strand, within MIT1002_00719at 787.084 kb on - strand, within MIT1002_00719at 787.100 kb on - strand, within MIT1002_00719at 787.100 kb on - strand, within MIT1002_00719at 787.129 kb on - strand, within MIT1002_00719at 787.247 kb on + strand, within MIT1002_00719at 787.247 kb on + strand, within MIT1002_00719at 787.254 kb on + strand, within MIT1002_00719at 787.255 kb on - strand, within MIT1002_00719at 787.269 kb on + strand, within MIT1002_00719

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
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784,371 + MIT1002_00716 0.72 -2.8
784,371 - MIT1002_00716 0.72 -1.7
784,385 - MIT1002_00716 0.73 +0.1
784,395 + MIT1002_00716 0.74 -0.8
784,424 + MIT1002_00716 0.75 -1.8
784,427 - MIT1002_00716 0.75 -2.2
784,439 - MIT1002_00716 0.76 +0.4
784,478 + MIT1002_00716 0.78 -0.0
784,493 + MIT1002_00716 0.79 -0.1
784,503 + MIT1002_00716 0.79 +0.3
784,511 - MIT1002_00716 0.80 -2.6
784,530 + MIT1002_00716 0.80 -1.4
784,543 - MIT1002_00716 0.81 -1.6
784,592 - MIT1002_00716 0.84 -0.1
784,619 + MIT1002_00716 0.85 -1.5
784,619 + MIT1002_00716 0.85 +0.5
784,791 - -2.0
784,814 + -0.9
784,822 + +1.1
784,838 + -0.5
784,848 + -0.8
784,849 - +0.1
784,856 - +0.3
784,856 - +1.8
784,856 - +0.7
784,984 + -0.8
784,985 - -0.3
784,992 - -1.7
785,153 - -2.9
785,211 - -2.4
785,277 - -0.5
785,283 - +2.0
785,394 + -1.1
785,394 + -2.4
785,402 - -2.7
785,409 + -1.2
785,451 + +0.2
785,471 - MIT1002_00718 0.10 +0.1
785,500 - MIT1002_00718 0.13 +1.0
785,526 - MIT1002_00718 0.16 -0.3
785,538 - MIT1002_00718 0.17 +0.4
785,548 + MIT1002_00718 0.18 +2.5
785,564 + MIT1002_00718 0.20 -1.0
785,709 + MIT1002_00718 0.34 -0.8
785,724 + MIT1002_00718 0.36 +0.9
785,739 - MIT1002_00718 0.38 +0.9
785,778 + MIT1002_00718 0.41 +0.6
785,817 - MIT1002_00718 0.45 +0.1
785,833 + MIT1002_00718 0.47 +1.3
785,833 + MIT1002_00718 0.47 +0.1
785,833 + MIT1002_00718 0.47 -0.8
785,845 + MIT1002_00718 0.48 -1.0
785,859 + MIT1002_00718 0.50 -1.7
785,968 + MIT1002_00718 0.61 -0.4
785,977 + MIT1002_00718 0.62 -0.9
785,987 + MIT1002_00718 0.63 -1.2
785,995 - MIT1002_00718 0.64 -2.4
786,011 + MIT1002_00718 0.65 -2.2
786,019 - MIT1002_00718 0.66 -1.9
786,064 + MIT1002_00718 0.71 -0.8
786,064 + MIT1002_00718 0.71 -0.7
786,064 + MIT1002_00718 0.71 +0.1
786,064 - MIT1002_00718 0.71 -0.2
786,064 - MIT1002_00718 0.71 +0.4
786,071 - MIT1002_00718 0.71 +0.1
786,077 + MIT1002_00718 0.72 +0.9
786,079 + MIT1002_00718 0.72 +2.3
786,079 - MIT1002_00718 0.72 -0.1
786,081 - MIT1002_00718 0.72 -1.2
786,087 - MIT1002_00718 0.73 -0.0
786,095 - MIT1002_00718 0.74 -0.4
786,101 - MIT1002_00718 0.74 -1.4
786,245 + MIT1002_00718 0.89 -0.4
786,303 - +0.0
786,308 + -0.6
786,326 - +0.2
786,456 - -0.1
786,480 + -1.1
786,482 + -1.7
786,482 + -2.1
786,497 + MIT1002_00719 0.10 -3.7
786,506 - MIT1002_00719 0.11 +0.1
786,561 + MIT1002_00719 0.15 -0.9
786,566 + MIT1002_00719 0.15 -2.4
786,574 - MIT1002_00719 0.16 -1.4
786,580 + MIT1002_00719 0.16 -1.7
786,588 - MIT1002_00719 0.17 +0.9
786,588 - MIT1002_00719 0.17 -0.5
786,734 - MIT1002_00719 0.27 -2.1
786,807 - MIT1002_00719 0.32 -1.8
786,807 - MIT1002_00719 0.32 -1.0
786,824 - MIT1002_00719 0.33 -1.8
786,825 - MIT1002_00719 0.33 -1.6
786,864 - MIT1002_00719 0.36 +0.9
787,003 + MIT1002_00719 0.46 -2.1
787,003 + MIT1002_00719 0.46 -1.7
787,003 + MIT1002_00719 0.46 -1.2
787,011 - MIT1002_00719 0.46 +0.1
787,011 - MIT1002_00719 0.46 +0.4
787,011 - MIT1002_00719 0.46 +0.9
787,055 - MIT1002_00719 0.49 -0.1
787,084 - MIT1002_00719 0.51 -1.1
787,100 - MIT1002_00719 0.52 -1.0
787,100 - MIT1002_00719 0.52 -1.8
787,129 - MIT1002_00719 0.54 +0.6
787,247 + MIT1002_00719 0.63 -0.4
787,247 + MIT1002_00719 0.63 -0.9
787,254 + MIT1002_00719 0.63 -1.5
787,255 - MIT1002_00719 0.63 -0.5
787,269 + MIT1002_00719 0.64 -3.0

Or see this region's nucleotide sequence