Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00571 and MIT1002_00572 are separated by 157 nucleotides MIT1002_00572 and MIT1002_00573 are separated by 271 nucleotides
MIT1002_00571: MIT1002_00571 - Group II intron-encoded protein LtrA, at 614,449 to 615,798
_00571
MIT1002_00572: MIT1002_00572 - hypothetical protein, at 615,956 to 616,144
_00572
MIT1002_00573: MIT1002_00573 - Tyrosine recombinase XerD, at 616,416 to 617,369
_00573
Position (kb) 615
616
617 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 615.874 kb on - strand at 615.924 kb on + strand at 615.978 kb on + strand, within MIT1002_00572 at 615.978 kb on + strand, within MIT1002_00572 at 615.986 kb on - strand, within MIT1002_00572 at 615.986 kb on - strand, within MIT1002_00572 at 615.986 kb on - strand, within MIT1002_00572 at 615.986 kb on - strand, within MIT1002_00572 at 616.022 kb on + strand, within MIT1002_00572 at 616.103 kb on + strand, within MIT1002_00572 at 616.103 kb on + strand, within MIT1002_00572 at 616.111 kb on - strand, within MIT1002_00572 at 616.219 kb on + strand at 616.238 kb on + strand at 616.271 kb on - strand at 616.432 kb on + strand at 616.437 kb on + strand at 616.445 kb on - strand at 616.445 kb on - strand at 616.445 kb on - strand at 616.461 kb on - strand at 616.564 kb on - strand, within MIT1002_00573 at 616.566 kb on + strand, within MIT1002_00573 at 616.574 kb on - strand, within MIT1002_00573 at 616.599 kb on + strand, within MIT1002_00573 at 616.607 kb on - strand, within MIT1002_00573 at 616.662 kb on - strand, within MIT1002_00573 at 616.703 kb on + strand, within MIT1002_00573 at 616.752 kb on + strand, within MIT1002_00573 at 616.792 kb on + strand, within MIT1002_00573 at 616.816 kb on + strand, within MIT1002_00573 at 617.046 kb on + strand, within MIT1002_00573 at 617.107 kb on - strand, within MIT1002_00573
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5 remove 615,874 - -2.7 615,924 + +0.7 615,978 + MIT1002_00572 0.12 +0.8 615,978 + MIT1002_00572 0.12 -0.5 615,986 - MIT1002_00572 0.16 -0.0 615,986 - MIT1002_00572 0.16 -0.2 615,986 - MIT1002_00572 0.16 -1.1 615,986 - MIT1002_00572 0.16 -0.0 616,022 + MIT1002_00572 0.35 -0.4 616,103 + MIT1002_00572 0.78 -3.4 616,103 + MIT1002_00572 0.78 -1.4 616,111 - MIT1002_00572 0.82 +0.9 616,219 + -0.8 616,238 + -0.4 616,271 - +0.1 616,432 + +1.8 616,437 + -1.4 616,445 - -1.3 616,445 - -0.4 616,445 - +0.1 616,461 - -0.3 616,564 - MIT1002_00573 0.16 +0.4 616,566 + MIT1002_00573 0.16 +1.1 616,574 - MIT1002_00573 0.17 +0.5 616,599 + MIT1002_00573 0.19 -0.1 616,607 - MIT1002_00573 0.20 -0.7 616,662 - MIT1002_00573 0.26 -1.1 616,703 + MIT1002_00573 0.30 -1.7 616,752 + MIT1002_00573 0.35 -0.7 616,792 + MIT1002_00573 0.39 +0.9 616,816 + MIT1002_00573 0.42 +0.6 617,046 + MIT1002_00573 0.66 +0.5 617,107 - MIT1002_00573 0.72 +0.4
Or see this region's nucleotide sequence