Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00545

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00544 and MIT1002_00545 are separated by 425 nucleotidesMIT1002_00545 and MIT1002_00546 are separated by 222 nucleotidesMIT1002_00546 and MIT1002_00547 are separated by 92 nucleotides MIT1002_00544: MIT1002_00544 - Alanine racemase, at 593,813 to 594,889 _00544 MIT1002_00545: MIT1002_00545 - hypothetical protein, at 595,315 to 596,040 _00545 MIT1002_00546: MIT1002_00546 - hypothetical protein, at 596,263 to 596,574 _00546 MIT1002_00547: MIT1002_00547 - Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein, at 596,667 to 597,053 _00547 Position (kb) 595 596 597Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 594.613 kb on + strand, within MIT1002_00544at 594.993 kb on - strandat 595.031 kb on + strandat 595.031 kb on + strandat 595.036 kb on + strandat 595.036 kb on + strandat 595.087 kb on + strandat 595.102 kb on + strandat 595.115 kb on - strandat 595.115 kb on - strandat 595.121 kb on + strandat 595.129 kb on - strandat 595.129 kb on - strandat 595.129 kb on - strandat 595.140 kb on + strandat 595.353 kb on + strandat 595.353 kb on + strandat 595.353 kb on + strandat 595.353 kb on + strandat 595.361 kb on - strandat 595.361 kb on - strandat 595.361 kb on - strandat 595.361 kb on - strandat 595.361 kb on - strandat 595.438 kb on + strand, within MIT1002_00545at 595.438 kb on + strand, within MIT1002_00545at 595.446 kb on - strand, within MIT1002_00545at 595.451 kb on - strand, within MIT1002_00545at 595.463 kb on + strand, within MIT1002_00545at 595.463 kb on + strand, within MIT1002_00545at 595.463 kb on + strand, within MIT1002_00545at 595.463 kb on + strand, within MIT1002_00545at 595.463 kb on + strand, within MIT1002_00545at 595.471 kb on - strand, within MIT1002_00545at 595.471 kb on - strand, within MIT1002_00545at 595.557 kb on + strand, within MIT1002_00545at 595.614 kb on + strand, within MIT1002_00545at 595.629 kb on + strand, within MIT1002_00545at 595.650 kb on + strand, within MIT1002_00545at 595.658 kb on - strand, within MIT1002_00545at 595.658 kb on - strand, within MIT1002_00545at 595.680 kb on + strand, within MIT1002_00545at 595.798 kb on + strand, within MIT1002_00545at 595.806 kb on - strand, within MIT1002_00545at 595.807 kb on + strand, within MIT1002_00545at 595.849 kb on - strand, within MIT1002_00545at 595.851 kb on - strand, within MIT1002_00545at 595.882 kb on + strand, within MIT1002_00545at 595.988 kb on + strandat 596.172 kb on + strandat 596.180 kb on - strandat 596.182 kb on - strandat 596.247 kb on + strandat 596.314 kb on + strand, within MIT1002_00546at 596.339 kb on + strand, within MIT1002_00546at 596.339 kb on + strand, within MIT1002_00546at 596.347 kb on - strand, within MIT1002_00546at 596.379 kb on + strand, within MIT1002_00546at 596.480 kb on - strand, within MIT1002_00546at 596.492 kb on - strand, within MIT1002_00546at 596.509 kb on + strand, within MIT1002_00546at 596.515 kb on - strand, within MIT1002_00546at 596.517 kb on - strand, within MIT1002_00546at 596.594 kb on + strandat 596.594 kb on + strandat 596.594 kb on + strandat 596.602 kb on - strandat 596.647 kb on - strandat 596.651 kb on + strandat 596.651 kb on + strandat 596.659 kb on - strandat 596.666 kb on + strandat 596.725 kb on + strand, within MIT1002_00547at 596.733 kb on - strand, within MIT1002_00547at 596.735 kb on - strand, within MIT1002_00547at 596.775 kb on - strand, within MIT1002_00547at 596.790 kb on - strand, within MIT1002_00547at 596.909 kb on + strand, within MIT1002_00547at 596.916 kb on + strand, within MIT1002_00547at 596.917 kb on - strand, within MIT1002_00547at 596.973 kb on + strand, within MIT1002_00547at 596.981 kb on - strand, within MIT1002_00547at 596.981 kb on - strand, within MIT1002_00547at 597.001 kb on - strand, within MIT1002_00547at 597.006 kb on + strand, within MIT1002_00547

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
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594,613 + MIT1002_00544 0.74 +0.4
594,993 - -1.5
595,031 + +0.2
595,031 + +1.1
595,036 + +1.1
595,036 + +0.8
595,087 + -3.2
595,102 + -1.5
595,115 - -0.3
595,115 - +0.2
595,121 + -1.3
595,129 - -0.2
595,129 - +0.5
595,129 - +1.2
595,140 + -0.4
595,353 + -0.1
595,353 + +0.7
595,353 + -1.1
595,353 + -2.3
595,361 - -0.2
595,361 - -1.6
595,361 - +0.3
595,361 - +0.2
595,361 - -0.5
595,438 + MIT1002_00545 0.17 +0.7
595,438 + MIT1002_00545 0.17 +1.2
595,446 - MIT1002_00545 0.18 +0.7
595,451 - MIT1002_00545 0.19 +0.3
595,463 + MIT1002_00545 0.20 -0.6
595,463 + MIT1002_00545 0.20 -0.5
595,463 + MIT1002_00545 0.20 -0.8
595,463 + MIT1002_00545 0.20 +0.5
595,463 + MIT1002_00545 0.20 +2.5
595,471 - MIT1002_00545 0.21 +0.3
595,471 - MIT1002_00545 0.21 -0.5
595,557 + MIT1002_00545 0.33 +0.4
595,614 + MIT1002_00545 0.41 -0.3
595,629 + MIT1002_00545 0.43 +0.3
595,650 + MIT1002_00545 0.46 -1.7
595,658 - MIT1002_00545 0.47 +0.5
595,658 - MIT1002_00545 0.47 -2.2
595,680 + MIT1002_00545 0.50 +0.9
595,798 + MIT1002_00545 0.67 +1.0
595,806 - MIT1002_00545 0.68 -1.0
595,807 + MIT1002_00545 0.68 +0.4
595,849 - MIT1002_00545 0.74 -1.1
595,851 - MIT1002_00545 0.74 -1.3
595,882 + MIT1002_00545 0.78 +1.7
595,988 + +0.1
596,172 + +3.7
596,180 - +1.0
596,182 - +0.1
596,247 + -0.2
596,314 + MIT1002_00546 0.16 -0.8
596,339 + MIT1002_00546 0.24 -0.8
596,339 + MIT1002_00546 0.24 -1.3
596,347 - MIT1002_00546 0.27 -0.7
596,379 + MIT1002_00546 0.37 +0.1
596,480 - MIT1002_00546 0.70 -0.5
596,492 - MIT1002_00546 0.73 -2.0
596,509 + MIT1002_00546 0.79 +0.3
596,515 - MIT1002_00546 0.81 -0.6
596,517 - MIT1002_00546 0.81 -0.7
596,594 + +1.0
596,594 + +0.6
596,594 + -0.6
596,602 - +0.2
596,647 - -0.2
596,651 + -1.3
596,651 + +0.1
596,659 - -0.3
596,666 + +1.5
596,725 + MIT1002_00547 0.15 +0.7
596,733 - MIT1002_00547 0.17 -0.5
596,735 - MIT1002_00547 0.18 -2.9
596,775 - MIT1002_00547 0.28 +0.3
596,790 - MIT1002_00547 0.32 -0.1
596,909 + MIT1002_00547 0.63 +1.0
596,916 + MIT1002_00547 0.64 +0.2
596,917 - MIT1002_00547 0.65 +0.4
596,973 + MIT1002_00547 0.79 -0.1
596,981 - MIT1002_00547 0.81 -0.9
596,981 - MIT1002_00547 0.81 -0.1
597,001 - MIT1002_00547 0.86 -0.6
597,006 + MIT1002_00547 0.88 -0.5

Or see this region's nucleotide sequence